genome.fa.s72.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold72
Parameters: 2 7 7 80 10 50 1000
Length:  5928628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  8  of  39  ( 4596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027681--1027820	52	2.7	52	87	4	194	30	16	18	34	1.93
1027809--1027833	13	1.9	13	100	0	50	36	16	16	32	1.90
1027898--1027922	13	1.9	13	100	0	50	32	16	16	36	1.90
1027876--1027942	33	2.0	33	88	0	98	40	13	11	34	1.81
1028519--1028905	169	2.3	171	82	6	435	35	15	26	22	1.94
1028752--1029451	43	14.7	52	77	14	467	32	17	24	24	1.97
1028881--1028949	22	3.2	22	62	25	56	30	17	26	26	1.97
1028859--1029462	43	13.1	43	81	11	623	31	18	25	24	1.97
1028903--1028970	21	3.2	21	62	25	52	27	17	27	26	1.98
1028884--1028954	24	3.2	24	61	19	62	28	19	25	26	1.99
1028859--1029408	92	6.0	92	94	1	896	31	18	24	24	1.98
1029037--1029457	49	8.9	50	77	12	460	32	18	25	24	1.97
1029457--1029526	33	2.1	35	94	5	126	20	17	37	25	1.94
1029511--1029868	71	5.1	69	86	8	437	31	12	35	20	1.90
1029531--1029878	70	5.0	68	85	8	442	33	12	33	19	1.89
1029511--1029868	34	10.3	35	85	10	445	31	12	35	20	1.90
1029562--1029994	37	13.0	32	81	12	202	31	14	33	21	1.92
1029880--1030003	31	4.0	31	86	9	164	28	16	30	24	1.97
1030935--1030989	1	55.0	1	77	0	56	0	5	5	89	0.61
1030929--1030985	22	2.6	22	83	10	73	0	7	7	85	0.73
1030935--1030989	12	4.7	12	79	4	67	0	5	5	89	0.61
1030936--1030987	23	2.4	22	90	6	79	0	5	5	88	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030935--1030988	22	2.4	23	93	3	92	0	5	5	88	0.61
1031240--1031265	12	2.2	12	100	0	52	0	0	7	92	0.39
1031238--1031277	21	2.0	20	85	5	53	2	2	12	82	0.87
1038186--1038305	52	2.3	52	95	0	213	29	16	18	35	1.93
1038186--1038325	52	2.7	52	87	4	194	30	16	18	34	1.93
1038314--1038338	13	1.9	13	100	0	50	36	16	16	32	1.90
1038403--1038427	13	1.9	13	100	0	50	32	16	16	36	1.90
1038381--1038447	33	2.0	33	88	0	98	40	13	11	34	1.81
1039024--1039410	169	2.3	171	82	6	435	35	15	26	22	1.94
1039257--1039956	43	14.7	52	77	14	467	32	17	24	24	1.97
1039386--1039454	22	3.2	22	62	25	56	30	17	26	26	1.97
1039364--1039967	43	13.1	43	81	11	623	31	18	25	24	1.97
1039408--1039475	21	3.2	21	62	25	52	27	17	27	26	1.98
1039389--1039459	24	3.2	24	61	19	62	28	19	25	26	1.99
1039364--1039913	92	6.0	92	94	1	896	31	18	24	24	1.98
1039542--1039962	49	8.9	50	77	12	460	32	18	25	24	1.97
1039962--1040031	33	2.1	35	94	5	126	20	17	37	25	1.94
1040016--1040373	71	5.1	69	86	8	437	31	12	35	20	1.90
1040036--1040383	70	5.0	68	85	8	442	33	12	33	19	1.89
1040016--1040373	34	10.3	35	85	10	445	31	12	35	20	1.90
1040067--1040499	37	13.0	32	81	12	202	31	14	33	21	1.92
1040385--1040508	31	4.0	31	86	9	164	28	16	30	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041440--1041494	1	55.0	1	77	0	56	0	5	5	89	0.61
1041434--1041490	22	2.6	22	83	10	73	0	7	7	85	0.73
1041440--1041494	12	4.7	12	79	4	67	0	5	5	89	0.61
1041441--1041492	23	2.4	22	90	6	79	0	5	5	88	0.63
1041440--1041493	22	2.4	23	93	3	92	0	5	5	88	0.61
1041745--1041769	11	2.3	11	100	0	50	0	0	8	92	0.40
1041743--1041781	20	2.0	19	85	5	51	2	2	12	82	0.89
1048766--1048790	13	1.9	13	100	0	50	36	16	16	32	1.90
1048855--1048879	13	1.9	13	100	0	50	32	16	16	36	1.90
1048833--1048899	33	2.0	33	88	0	98	40	13	11	34	1.81
1054121--1054184	13	4.6	13	71	21	58	67	4	6	21	1.32
1054117--1054208	43	2.2	41	88	5	141	66	5	4	23	1.31
1055425--1055510	33	2.6	33	77	14	81	44	0	0	55	0.99
1055478--1055507	15	2.1	14	93	6	51	43	0	0	56	0.99
1055478--1055565	25	3.5	24	75	10	70	53	0	1	45	1.07
1056607--1056724	28	4.1	28	81	7	130	27	1	6	64	1.28
1056608--1056699	20	4.7	19	68	11	62	26	2	6	65	1.28
1056615--1056724	57	1.9	58	83	9	145	26	1	7	64	1.29
1059186--1059221	15	2.4	15	90	0	54	16	11	47	25	1.79
1062310--1062362	20	2.5	22	90	9	92	64	9	11	15	1.50
1063278--1063348	20	3.6	19	75	7	70	40	12	11	35	1.79
1063271--1063348	40	2.0	39	89	2	120	41	12	11	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063959--1064866	86	10.6	85	87	6	1164	21	18	32	27	1.96
1063959--1065878	28	68.8	28	88	4	1339	25	16	33	25	1.96
1064400--1065926	55	27.6	54	89	3	1740	26	15	33	24	1.95
1064400--1065926	27	55.3	27	90	2	1740	26	15	33	24	1.95
1067120--1067186	33	2.0	33	88	0	98	34	11	13	40	1.81
1067140--1067164	13	1.9	13	100	0	50	36	16	16	32	1.90
1067227--1067251	13	1.9	13	100	0	50	32	16	16	36	1.90
1067260--1067387	52	2.5	52	94	3	224	33	17	17	30	1.94
1080955--1081129	51	3.4	51	96	2	307	29	17	18	34	1.94
1081203--1081269	33	2.0	33	88	0	98	40	13	11	34	1.81
1081225--1081249	13	1.9	13	100	0	50	32	16	16	36	1.90
1083704--1083778	20	3.8	20	80	3	80	40	12	13	34	1.81
1083701--1083778	40	2.0	39	87	2	111	39	12	12	34	1.82
1084877--1085627	374	2.0	374	92	0	1243	33	18	14	34	1.91
1088638--1088817	90	2.0	90	95	0	324	33	12	23	30	1.92
1088815--1088852	3	12.7	3	94	0	67	31	2	0	65	1.06
1092759--1092794	18	2.0	18	89	10	56	55	2	0	41	1.14
1093981--1094007	6	4.5	6	100	0	54	51	29	18	0	1.46
1096103--1096128	13	2.0	13	100	0	52	30	15	15	38	1.88
1096083--1096146	32	2.0	33	93	3	112	28	12	15	43	1.83
1096083--1096146	19	3.6	19	72	25	68	28	12	15	43	1.83
1096773--1096853	39	2.1	39	84	11	103	32	25	7	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098234--1098276	20	2.1	20	86	4	59	9	30	44	16	1.79
1104871--1104896	13	2.0	13	100	0	52	30	15	15	38	1.88
1104851--1104914	32	2.0	33	93	3	112	28	12	15	43	1.83
1104851--1104914	19	3.6	19	72	25	68	28	12	15	43	1.83
1106580--1106630	21	2.4	21	90	0	84	13	27	21	37	1.91
1112080--1112387	131	2.3	128	80	7	309	33	14	25	26	1.94
1112241--1112359	51	2.3	51	86	0	175	31	13	26	28	1.94
1112342--1112418	28	2.8	28	90	4	120	23	19	32	24	1.97
1112402--1112517	51	2.3	51	83	0	151	31	11	25	31	1.91
1112212--1112552	158	2.2	158	84	3	445	31	13	27	28	1.94
1112477--1112640	76	2.2	76	89	2	258	32	12	26	28	1.93
1114356--1114381	13	2.0	13	100	0	52	38	15	15	30	1.88
1114336--1114401	33	2.0	33	87	0	96	39	12	16	31	1.85
1115148--1115244	42	2.3	42	85	3	124	43	14	25	16	1.86
1115267--1115520	122	2.1	115	86	6	348	25	21	27	25	1.99
1115266--1115500	61	3.9	61	84	4	298	26	20	27	25	1.99
1115540--1115791	55	4.4	56	82	6	242	22	20	28	28	1.98
1115335--1115735	215	1.9	214	86	4	574	25	19	29	26	1.98
1115548--1115771	60	3.8	60	77	9	208	24	19	29	27	1.98
1115266--1115894	270	2.3	270	84	4	827	26	19	28	25	1.99
1116868--1116935	12	5.7	11	81	11	64	1	2	10	85	0.77
1116875--1116932	6	9.5	6	80	10	64	1	1	12	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116866--1116935	24	2.9	23	81	6	77	2	2	10	84	0.83
1116876--1116932	28	2.0	28	86	13	80	1	1	12	84	0.79
1127243--1127267	4	6.2	4	100	0	50	76	0	0	24	0.80
1129489--1129607	51	2.3	51	86	0	175	31	13	26	28	1.94
1129590--1129661	28	2.6	28	84	10	103	23	16	33	26	1.96
1129650--1129765	51	2.3	51	84	0	151	30	10	26	32	1.90
1129725--1129916	76	2.5	76	88	5	300	32	14	25	27	1.94
1129855--1129995	51	2.8	49	76	3	140	34	12	23	29	1.91
1132314--1132367	20	2.7	20	91	5	83	42	14	16	25	1.87
1132406--1132431	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39