Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Length:  8764944

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   

This is table  52  of  52  ( 6211 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8465599--8465649
18
3.1
18
74
25
58
45
0
0
54
0.99
8466223--8466302
42
1.9
42
86
0
115
37
13
40
8
1.76
8466373--8466452
6
13.3
6
72
5
54
31
16
40
12
1.85
8467750--8467774
2
12.5
2
100
0
50
0
48
0
52
1.00
8468636--8468673
18
2.1
18
85
9
51
5
18
34
42
1.73
8494068--8494132
24
2.7
25
79
13
73
52
3
7
36
1.46
8494226--8494299
23
3.4
22
70
5
69
45
2
8
43
1.47
8495342--8495379
2
19.0
2
100
0
76
50
0
0
50
1.00
8497030--8497075
2
23.0
2
95
0
83
52
0
0
47
1.00
8498903--8498938
12
3.0
12
91
0
54
44
2
5
47
1.41
8499537--8499562
2
13.0
2
100
0
52
50
0
0
50
1.00
8500902--8500947
20
2.3
20
85
7
58
58
0
2
39
1.10
8501911--8501946
2
18.5
2
94
5
65
47
0
0
52
1.00
8502423--8502462
21
1.9
21
100
0
80
20
25
15
40
1.90
8504239--8504266
7
4.0
7
100
0
56
42
28
14
14
1.84
8505490--8505514
9
2.8
9
100
0
50
60
0
0
40
0.97
8509436--8509484
20
2.3
22
86
6
66
36
0
0
63
0.95
8509453--8509517
10
6.5
10
70
19
55
33
0
3
63
1.10
8509456--8509514
15
4.2
14
75
12
50
30
0
3
66
1.08
8522139--8522166
2
14.0
2
100
0
56
50
0
0
50
1.00
8524123--8524157
4
8.8
4
100
0
70
25
0
22
51
1.48
8524352--8524431
32
2.8
26
73
20
70
46
1
0
52
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8528368--8528406
2
19.5
2
100
0
78
48
0
51
0
1.00
8530707--8530765
2
29.5
2
96
0
109
47
0
1
50
1.11
8531693--8531742
23
2.2
22
80
13
57
34
4
6
56
1.43
8531840--8531884
23
2.0
23
81
0
54
37
4
2
55
1.32
8533479--8533510
2
16.0
2
100
0
64
50
0
0
50
1.00
8533617--8533645
3
9.7
3
100
0
58
31
0
0
68
0.89
8534836--8534862
2
13.5
2
100
0
54
51
0
0
48
1.00
8538492--8538517
2
13.0
2
100
0
52
50
0
0
50
1.00
8539921--8539965
18
2.5
17
85
10
54
66
0
2
31
1.04
8539921--8539970
23
2.1
25
88
7
77
64
0
2
34
1.05
8539953--8540029
32
2.4
32
81
16
97
54
0
0
45
0.99
8539974--8540026
17
3.2
17
76
23
60
56
0
0
43
0.99
8551850--8551886
2
18.5
2
100
0
74
0
48
0
51
1.00
8559612--8559646
3
11.7
3
87
0
52
28
31
5
34
1.81
8562192--8562232
2
20.5
2
100
0
82
51
0
0
48
1.00
8565563--8565608
21
2.1
22
84
4
58
30
19
30
19
1.97
8567493--8567558
27
2.4
27
85
12
82
24
7
25
42
1.81
8567899--8567955
3
18.7
3
92
3
96
64
0
1
33
1.04
8568184--8568222
2
19.5
2
100
0
78
51
0
0
48
1.00
8570656--8570689
2
17.0
2
100
0
68
50
0
0
50
1.00
8572145--8572176
2
16.0
2
93
0
55
50
3
0
46
1.17
8573129--8573158
6
5.0
6
100
0
60
16
33
0
50
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8573648--8573692
2
22.5
2
100
0
90
48
0
0
51
1.00
8590754--8590793
17
2.3
18
86
4
55
72
10
15
2
1.21
8604744--8604775
2
16.0
2
93
0
55
53
0
0
46
1.00
8604821--8604867
2
23.5
2
100
0
94
48
0
0
51
1.00
8610317--8610343
2
13.5
2
100
0
54
51
48
0
0
1.00
8617869--8617894
2
13.0
2
100
0
52
50
0
0
50
1.00
8627541--8627576
2
18.0
2
100
0
72
50
0
50
0
1.00
8629731--8629757
7
3.9
7
100
0
54
44
14
40
0
1.46
8632068--8632168
39
2.6
39
95
0
175
51
23
8
15
1.72
8642859--8642934
1
76.0
1
81
0
80
0
2
7
89
0.57
8642860--8642935
34
2.4
34
80
8
97
0
3
7
88
0.63
8654661--8654769
39
2.8
40
80
6
134
35
18
21
24
1.95
8660942--8660971
2
15.0
2
100
0
60
50
0
0
50
1.00
8661074--8661099
2
13.0
2
100
0
52
50
0
0
50
1.00
8666172--8666390
50
4.4
50
84
4
246
31
18
18
31
1.95
8666172--8666390
100
2.2
99
85
3
278
31
18
18
31
1.95
8670643--8670874
50
4.6
50
87
0
302
28
18
19
33
1.95
8679856--8679899
1
44.0
1
81
0
52
90
0
9
0
0.44
8680301--8680344
12
3.7
12
76
11
54
43
9
9
38
1.68
8680329--8680377
22
2.2
23
85
3
64
59
2
2
36
1.21
8680368--8680405
18
2.1
18
90
0
58
60
0
2
36
1.11
8680414--8680479
15
4.1
15
70
22
53
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8680371--8680513
39
3.7
38
76
17
118
59
0
0
39
1.08
8680359--8680513
11
12.6
12
65
23
58
60
0
0
38
1.07
8680414--8680513
50
2.0
50
82
9
123
62
1
0
37
1.02
8682182--8682215
12
3.0
11
87
8
50
44
17
0
38
1.49
8690003--8690055
2
26.0
2
79
11
54
47
7
1
43
1.42
8694961--8695069
54
2.0
54
96
0
200
9
22
18
50
1.74
8698655--8698683
2
14.5
2
100
0
58
48
0
0
51
1.00
8699533--8699570
3
12.7
3
100
0
76
65
0
0
34
0.93
8705481--8705512
2
16.0
2
100
0
64
50
0
0
50
1.00
8707121--8707162
21
2.0
20
86
4
57
26
0
0
73
0.83
8707251--8707341
35
2.5
37
89
10
134
63
5
1
29
1.24
8714376--8714410
2
17.5
2
100
0
70
48
0
0
51
1.00
8714954--8714979
3
8.7
3
100
0
52
65
0
0
34
0.93
8717273--8717330
23
2.5
24
97
2
109
63
8
10
17
1.49
8718242--8718316
20
3.8
20
76
3
71
41
10
13
34
1.79
8718239--8718316
40
2.0
39
84
2
102
41
11
12
34
1.80
8718516--8718559
3
14.3
3
90
4
70
63
0
4
31
1.14
8720860--8720913
22
2.6
21
82
8
65
59
0
0
40
0.98
8720858--8720918
17
3.3
18
80
17
72
55
0
0
44
0.99
8726726--8726762
6
6.2
6
93
0
65
45
32
2
18
1.64
8741375--8741436
31
2.0
30
85
14
83
58
0
1
40
1.08
8741380--8741435
21
2.6
23
78
10
66
60
0
1
37
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8750676--8751648
494
2.0
493
92
1
1635
34
14
18
32
1.91
8756854--8756882
2
14.5
2
100
0
58
48
0
0
51
1.00
8760352--8760425
36
2.1
36
84
0
94
22
14
29
32
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52

The End!