genome.fa.s129.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  11  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572446--1572785	175	1.9	175	92	0	563	27	19	26	26	1.99
1572702--1572931	51	4.8	48	78	12	233	30	19	26	23	1.98
1572798--1572942	43	3.2	43	75	11	164	31	18	26	23	1.98
1572702--1572942	92	2.5	93	85	7	290	30	19	26	23	1.98
1572938--1573372	62	7.0	62	77	9	370	34	14	28	22	1.93
1572965--1573364	31	12.9	30	75	11	283	34	14	28	23	1.94
1572938--1573364	126	3.4	123	80	10	424	33	14	28	23	1.94
1572978--1573364	187	2.1	184	83	6	492	33	14	28	23	1.94
1574652--1574693	7	6.3	7	84	15	54	0	0	14	85	0.59
1574652--1574689	18	2.1	17	90	9	58	0	0	13	86	0.56
1581662--1581687	13	2.0	13	100	0	52	38	15	15	30	1.88
1581739--1581792	21	2.7	20	77	8	65	37	14	12	35	1.85
1582471--1583269	49	16.8	51	71	14	446	29	18	26	25	1.98
1582577--1583269	49	14.8	49	73	14	530	29	18	26	25	1.98
1582520--1583269	88	7.9	101	78	11	451	29	18	26	25	1.98
1582822--1583203	39	8.7	39	72	16	170	28	19	26	25	1.99
1582773--1583121	88	4.0	88	90	1	549	27	19	26	26	1.99
1582774--1583121	175	2.0	175	95	0	624	27	19	25	26	1.99
1583081--1583264	51	3.8	49	77	12	195	30	18	26	23	1.98
1583131--1583275	43	3.2	43	75	11	164	31	18	26	24	1.98
1583081--1583275	92	2.1	93	88	3	286	31	18	26	23	1.97
1583357--1583768	30	13.3	30	79	8	382	34	14	29	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583357--1583758	61	6.5	61	82	5	452	34	14	29	21	1.94
1583364--1583761	123	3.2	122	80	6	471	33	15	29	22	1.94
1583271--1583768	218	2.3	215	80	8	519	33	14	29	22	1.93
1585489--1585799	166	1.9	168	85	5	445	31	9	7	51	1.62
1585836--1586373	155	3.5	151	76	7	461	25	17	18	38	1.93
1586095--1586374	156	1.8	155	86	5	413	23	17	20	38	1.93
1587589--1587741	43	3.6	43	83	3	191	37	20	26	15	1.92
1587684--1587772	43	2.1	43	80	0	97	34	17	28	19	1.95
1587862--1588000	44	3.2	44	75	12	133	36	12	28	21	1.91
1590410--1590609	79	2.5	79	79	4	233	34	15	23	27	1.94
1590485--1590808	130	2.5	130	80	3	314	35	13	23	27	1.92
1590567--1590677	51	2.2	51	80	3	125	34	12	25	27	1.92
1590700--1590823	50	2.5	50	86	4	169	37	11	23	28	1.89
1592575--1592614	21	1.9	21	85	10	55	35	12	32	20	1.90
1592995--1593045	20	2.5	20	96	0	93	45	9	13	31	1.76
1593694--1594036	61	5.6	60	84	5	418	30	18	25	25	1.98
1593694--1594036	62	5.6	62	85	3	435	30	18	25	25	1.98
1593694--1594036	123	2.8	123	90	0	499	30	18	25	25	1.98
1593815--1594443	285	2.2	285	87	2	897	29	17	27	26	1.98
1594076--1594344	62	4.4	62	82	3	276	26	17	27	27	1.98
1594262--1594454	100	1.9	100	82	4	237	29	17	27	25	1.97
1602508--1602600	46	2.0	46	97	0	177	26	25	11	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1607711--1608088	79	4.8	79	78	6	349	35	14	22	27	1.93
1607713--1608088	158	2.4	157	83	5	445	35	14	22	27	1.93
1608043--1608151	49	2.2	50	93	1	184	38	9	24	27	1.86
1610449--1610499	20	2.5	20	87	0	75	43	7	17	31	1.78
1613818--1613882	32	2.0	32	96	0	121	30	21	24	23	1.99
1615538--1615579	12	3.3	12	84	12	57	83	4	9	2	0.88
1615538--1615593	26	2.0	27	86	10	78	75	7	10	7	1.20
1616945--1617589	32	20.2	32	78	8	575	29	34	17	18	1.94
1616945--1617589	63	10.1	63	80	7	630	29	34	17	18	1.94
1616942--1617579	158	4.0	157	79	7	571	29	34	17	18	1.94
1617651--1618091	52	8.3	52	72	10	254	23	24	15	35	1.94
1617697--1618098	217	1.9	217	82	3	522	23	24	15	36	1.94
1617734--1618305	165	3.5	165	75	8	413	25	24	15	35	1.94
1617901--1618103	51	3.9	52	73	7	135	25	25	15	34	1.95
1617899--1618106	103	2.0	104	82	6	244	24	25	14	35	1.94
1617901--1618206	155	2.0	156	81	4	359	26	24	15	33	1.95
1618304--1618435	61	2.2	61	86	5	178	26	21	13	37	1.91
1619897--1620138	122	2.0	123	90	2	389	30	20	9	39	1.84
1622984--1623179	79	2.5	79	80	5	218	34	12	25	28	1.92
1623152--1623338	51	3.7	51	87	0	248	35	11	25	27	1.90
1623368--1623486	51	2.3	51	82	2	132	29	15	28	26	1.96
1623239--1623694	130	3.5	130	93	0	745	31	15	27	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623496--1623613	51	2.3	51	80	2	121	29	14	28	27	1.95
1623547--1623726	79	2.3	80	83	2	220	30	17	27	23	1.97
1623738--1623902	51	3.2	50	82	9	208	33	9	26	30	1.88
1626237--1626261	13	1.9	13	100	0	50	40	16	12	32	1.84
1626925--1627024	40	2.5	40	85	6	121	46	10	25	19	1.80
1627040--1627138	42	2.3	43	85	1	128	40	13	27	19	1.88
1627200--1627575	61	6.4	60	79	8	355	28	21	24	25	1.99
1627382--1627571	55	3.3	55	84	7	263	26	21	24	27	1.99
1627192--1627571	116	3.2	116	79	9	394	29	21	24	25	1.99
1627591--1627754	55	3.0	55	81	0	193	24	20	26	29	1.99
1627436--1627725	149	1.9	151	86	4	413	27	19	25	26	1.99
1627369--1627854	210	2.3	207	84	5	613	28	18	26	25	1.98
1630972--1630997	13	2.0	13	100	0	52	38	15	15	30	1.88
1630950--1631017	33	2.1	32	84	13	86	36	13	16	33	1.87
1631048--1631097	20	2.4	21	86	3	66	28	18	16	38	1.91
1633440--1633484	22	2.0	22	87	8	65	35	26	0	37	1.57
1634858--1634909	20	2.4	21	81	12	61	3	25	50	21	1.65
1641498--1641552	20	2.7	21	82	2	67	27	18	14	40	1.89
1644057--1644109	20	2.6	21	78	3	63	30	15	13	41	1.85
1644097--1644121	13	1.9	13	100	0	50	36	16	16	32	1.90
1655484--1655648	79	2.1	79	85	4	217	34	13	24	26	1.93
1655484--1655681	79	2.5	78	82	6	211	36	12	23	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1655634--1655856	51	4.4	51	80	6	263	31	12	28	27	1.92
1655634--1655856	102	2.2	102	85	3	297	31	12	28	27	1.92
1655788--1655935	79	1.9	79	84	0	197	29	14	30	25	1.95
1655867--1655983	51	2.3	51	85	2	146	30	13	29	25	1.94
1655736--1656062	130	2.5	129	89	3	485	31	14	28	26	1.95
1655917--1656093	79	2.2	80	86	5	243	28	16	28	25	1.97
1656051--1656120	28	2.5	27	81	11	70	25	22	27	24	2.00
1656108--1656254	51	2.9	51	89	1	215	35	8	23	32	1.85
1656960--1657013	20	2.7	20	85	5	65	40	16	16	25	1.89
1656911--1657063	69	2.2	69	90	0	234	39	13	17	28	1.88
1658571--1658614	20	2.3	19	88	4	61	4	15	0	79	0.89
1662476--1663300	157	5.3	154	74	7	540	37	20	16	25	1.93
1664242--1664270	10	3.0	10	95	5	51	62	10	0	27	1.28
1665339--1665721	165	2.3	164	82	10	435	49	8	10	31	1.67
1667879--1668045	79	2.1	78	82	7	212	37	12	21	28	1.90
1667893--1668064	79	2.2	79	80	6	179	34	13	23	28	1.93
1668007--1668219	51	4.2	51	83	3	223	31	12	26	28	1.93
1668151--1668298	79	1.9	79	85	5	210	29	16	29	25	1.97
1668232--1668350	51	2.3	50	84	7	150	29	15	28	26	1.96
1667921--1668350	232	1.9	231	80	6	521	32	13	26	28	1.93
1668103--1668428	130	2.5	129	89	3	483	30	15	27	26	1.96
1668286--1668454	79	2.1	80	84	5	218	30	17	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1668414--1668484	28	2.5	28	81	2	88	30	19	28	21	1.97
1668472--1668650	51	3.5	51	86	2	236	33	10	26	29	1.89
1670478--1670532	20	2.8	20	97	0	101	41	10	12	34	1.78
1670558--1670609	20	2.6	20	88	8	79	42	15	17	25	1.88
1670547--1670576	13	2.3	13	100	0	60	40	13	16	30	1.87
1670478--1670643	82	2.0	82	85	2	226	39	16	16	27	1.90
1671345--1671509	42	3.8	43	77	9	156	39	12	29	19	1.88
1671349--1671506	45	3.6	45	77	14	152	39	11	29	19	1.87
1671514--1671865	61	5.9	61	79	12	320	28	21	25	25	1.99
1671697--1671887	55	3.3	55	86	10	267	26	21	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23