genome.fa.s129.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  4  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431067--431092	13	2.0	13	100	0	52	30	15	15	38	1.88
431152--431224	20	3.6	20	81	3	101	31	19	13	35	1.91
431132--431224	41	2.3	41	96	0	168	30	18	12	38	1.88
431132--431206	21	3.6	21	78	3	89	29	17	12	41	1.85
432796--434119	101	13.9	97	86	6	1262	32	17	25	24	1.97
433244--434118	43	19.1	43	80	11	852	31	18	26	24	1.97
433244--434118	93	9.5	91	85	7	985	31	18	26	24	1.97
433911--433978	22	3.1	22	60	19	52	29	20	26	23	1.99
434186--434361	31	5.8	31	78	7	141	29	15	30	24	1.95
434186--434332	62	2.5	60	84	4	172	29	14	30	24	1.95
435361--435401	18	2.2	19	86	4	57	2	9	4	82	0.89
439910--439961	25	2.1	25	100	0	104	32	9	15	42	1.79
443089--443139	19	2.6	20	87	3	68	43	15	13	27	1.85
448505--448556	20	2.6	20	81	0	68	32	15	15	36	1.89
453084--453166	30	2.8	30	88	0	121	43	14	16	25	1.86
453905--453963	32	1.9	32	86	6	86	20	13	32	33	1.91
454228--454412	50	3.7	50	83	0	217	28	16	12	42	1.84
454231--454412	100	1.8	100	84	2	249	29	16	12	42	1.84
456754--457151	79	5.0	78	74	12	362	28	23	14	34	1.94
456754--457150	153	2.5	162	80	10	440	28	22	14	34	1.93
457085--457196	51	2.2	51	85	3	145	31	23	14	31	1.94
457136--457640	79	6.4	78	82	6	520	28	24	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457136--457640	157	3.2	155	80	8	576	28	24	13	33	1.93
457156--457640	236	2.1	235	84	5	541	29	23	12	34	1.92
458602--458838	28	8.5	28	75	12	202	23	17	30	27	1.97
458601--458818	84	2.6	83	80	5	226	22	18	31	27	1.97
458601--458828	83	2.7	83	80	4	219	22	17	31	27	1.97
459571--459622	13	4.5	13	73	26	62	36	15	15	32	1.89
459571--459639	33	2.1	33	89	10	106	36	17	14	31	1.90
462245--462285	13	3.1	13	89	3	64	36	14	14	34	1.87
468370--468424	20	2.8	20	85	0	83	34	14	10	40	1.81
468410--468439	13	2.3	13	100	0	60	36	13	16	33	1.88
468391--468456	33	2.0	33	88	5	98	34	16	13	34	1.88
468525--468551	13	2.1	13	100	0	54	40	14	14	29	1.86
468871--469152	28	10.0	28	85	1	357	24	19	30	26	1.98
469195--469232	14	2.7	14	91	0	58	31	21	7	39	1.82
484126--484250	20	5.7	20	71	18	97	40	11	16	31	1.84
484234--484290	30	1.9	30	88	0	87	47	10	15	26	1.78
485531--485555	12	2.1	12	100	0	50	32	16	16	36	1.90
485512--485574	32	2.0	32	87	0	90	31	12	15	39	1.85
485617--485641	13	1.9	13	100	0	50	32	16	16	36	1.90
485650--485778	52	2.5	52	94	0	222	34	18	17	29	1.94
490859--490884	13	2.0	13	100	0	52	30	15	15	38	1.88
491562--491605	21	2.1	21	83	8	54	25	31	4	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493411--493436	13	2.0	13	100	0	52	38	15	15	30	1.88
495517--495547	15	2.1	15	93	0	53	12	22	16	48	1.80
499612--499637	13	2.0	13	100	0	52	30	15	15	38	1.88
507428--507468	21	2.0	21	85	9	57	39	12	9	39	1.76
507502--507560	20	2.9	21	82	10	77	40	15	15	28	1.87
507548--507684	53	2.6	53	96	1	247	37	18	17	27	1.93
507708--507738	10	3.1	10	90	0	53	22	29	6	41	1.78
507726--507786	21	2.9	21	97	2	113	26	24	11	37	1.89
507708--507857	43	3.5	43	80	10	182	28	24	8	38	1.85
507877--507901	13	1.9	13	100	0	50	36	16	16	32	1.90
508380--508446	37	1.9	35	88	11	102	32	11	25	29	1.92
510968--511012	10	4.6	10	83	10	58	86	13	0	0	0.57
510973--511012	20	2.0	21	95	5	73	87	12	0	0	0.54
510971--511015	16	2.8	16	86	10	65	88	11	0	0	0.50
512422--512712	30	9.6	30	74	12	172	28	27	15	28	1.96
512422--512596	29	6.0	28	74	12	104	28	28	16	26	1.97
512421--512597	59	3.0	59	81	5	196	28	28	16	27	1.97
512574--512648	35	2.2	34	82	2	96	24	29	9	37	1.86
512639--512762	28	4.3	29	84	9	148	37	29	15	17	1.91
512878--512967	43	2.1	43	91	0	144	26	25	17	30	1.98
512782--513020	92	2.5	95	85	6	313	25	25	16	31	1.97
512921--513074	52	2.9	53	80	4	184	25	23	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514233--514257	13	1.9	13	100	0	50	36	16	16	32	1.90
514320--514344	13	1.9	13	100	0	50	32	16	16	36	1.90
514333--514481	52	2.9	51	86	4	217	33	18	16	31	1.93
523074--523113	22	1.9	21	90	10	64	35	10	12	42	1.76
523205--523272	20	3.8	20	74	25	87	26	17	14	41	1.88
523195--523303	33	3.3	33	93	1	175	28	19	14	37	1.91
523225--523284	13	5.1	13	73	22	69	28	16	15	40	1.89
523269--523324	19	2.9	19	86	2	76	28	21	14	35	1.92
523373--523398	13	2.0	13	100	0	52	30	15	15	38	1.88
528832--528862	15	2.1	15	93	0	53	48	16	22	12	1.80
530867--530944	20	3.7	20	74	15	75	29	15	14	41	1.86
531065--531110	21	2.2	20	81	11	58	32	19	4	43	1.71
533472--533523	19	2.7	20	84	6	70	40	17	13	28	1.87
534840--534864	13	1.9	13	100	0	50	32	16	20	32	1.94
534820--534883	32	2.0	32	87	9	94	35	17	18	28	1.93
537441--537476	13	2.8	13	91	0	54	36	8	16	38	1.79
541984--542015	3	10.7	3	93	0	55	28	34	0	37	1.57
546585--546625	21	2.0	21	100	0	82	36	14	24	24	1.93
546587--546636	21	2.4	21	90	6	75	42	16	18	24	1.89
548736--548859	62	2.0	62	100	0	248	37	12	16	33	1.87
552655--552708	21	2.6	21	91	2	83	31	16	11	40	1.84
555316--555390	33	2.3	33	88	6	109	34	1	2	61	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555316--555401	32	2.7	31	81	13	102	37	1	3	58	1.23
555954--556018	32	2.0	32	85	8	87	30	13	15	40	1.86
555984--556039	19	2.9	20	78	7	62	33	16	14	35	1.88
556071--556133	32	2.0	31	84	12	83	33	15	20	30	1.94
558243--558293	20	2.5	20	90	6	77	33	13	17	35	1.89
566319--566360	22	1.9	22	95	0	75	40	2	33	23	1.68
566955--566981	13	2.1	13	100	0	54	29	14	14	40	1.86
566965--567021	19	2.9	19	89	2	87	31	15	17	35	1.92
567050--567103	20	2.7	20	91	5	83	31	12	18	37	1.89
571702--571767	19	3.8	19	73	22	81	34	18	13	33	1.90
571723--571747	13	1.9	13	100	0	50	32	16	16	36	1.90
571704--571766	32	2.0	32	96	0	117	33	19	14	33	1.91
578055--578098	21	2.0	23	86	8	65	34	4	20	40	1.73
582665--582758	43	2.2	43	86	0	134	31	13	15	38	1.87
592633--592677	21	2.1	21	84	8	56	42	11	4	42	1.60
592816--592879	33	2.0	32	84	3	83	40	15	12	31	1.85
600105--600139	3	11.7	3	87	0	52	31	34	0	34	1.58
601796--601844	19	2.5	20	90	3	73	36	14	16	32	1.89
603493--603670	51	3.5	50	74	4	149	35	10	23	30	1.88
605977--606050	20	3.7	20	81	3	103	35	13	20	31	1.91
605995--606070	21	3.7	21	80	3	100	39	11	18	30	1.87
605977--606070	41	2.3	41	98	0	179	37	12	19	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606109--606134	13	2.0	13	100	0	52	38	15	15	30	1.88
608343--608387	21	2.1	21	84	8	56	53	4	20	22	1.63
612304--612339	13	2.8	13	95	0	63	36	19	13	30	1.91
614790--614863	20	3.7	20	81	3	103	35	13	20	31	1.91
614808--614883	21	3.7	21	80	3	100	39	11	18	30	1.87
614790--614883	41	2.3	41	98	0	179	37	12	19	30	1.89
614922--614947	13	2.0	13	100	0	52	38	15	15	30	1.88
616010--616047	20	1.9	20	100	0	76	31	18	10	39	1.85
616063--616104	17	2.5	17	96	0	75	47	0	11	40	1.40
616862--616887	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23