genome.fa.s129.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  9  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282090--1282422	97	3.4	96	86	4	445	27	11	29	31	1.91
1282927--1282990	33	1.9	33	87	0	92	28	17	12	42	1.85
1285311--1285426	51	2.2	52	86	5	173	31	23	12	32	1.91
1285418--1285489	28	2.7	26	83	10	76	25	31	19	23	1.98
1285441--1285669	127	1.8	127	86	3	336	26	26	14	32	1.95
1285525--1285856	79	4.2	79	82	8	374	26	27	14	31	1.95
1285864--1286139	51	5.3	52	72	10	226	26	26	14	32	1.95
1285962--1286038	28	2.8	27	84	7	93	22	31	20	25	1.98
1285759--1286168	158	2.6	154	88	3	581	26	26	15	31	1.95
1285990--1286240	130	1.9	130	81	1	306	27	25	14	32	1.95
1288753--1288802	14	3.4	15	78	18	52	76	0	22	2	0.89
1288750--1288806	10	5.4	10	80	17	62	78	0	19	1	0.83
1289339--1289389	23	2.2	24	80	16	63	37	0	5	56	1.23
1295540--1295572	11	3.0	11	90	0	57	87	12	0	0	0.53
1295540--1295573	12	3.0	12	87	12	54	85	14	0	0	0.60
1296592--1297378	27	28.8	27	85	8	990	23	33	15	27	1.94
1296613--1297378	109	7.0	108	85	8	982	23	33	15	27	1.95
1297407--1297484	26	2.8	27	84	9	104	26	33	14	25	1.94
1297407--1297472	27	2.4	27	92	5	107	24	31	15	28	1.95
1297451--1297882	32	13.8	32	89	6	654	30	33	18	17	1.94
1297451--1297882	150	2.8	154	86	9	590	30	33	18	17	1.94
1297503--1297845	182	1.9	181	95	1	625	30	34	18	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299116--1299166	14	3.4	15	78	15	52	76	0	21	1	0.88
1299113--1299168	17	3.3	17	74	0	58	78	0	19	1	0.84
1301854--1302066	83	2.5	82	81	8	252	31	19	28	21	1.97
1302104--1302207	45	2.4	43	82	7	129	36	20	23	20	1.95
1302416--1302685	84	3.2	82	76	11	251	36	17	24	20	1.94
1302618--1302731	42	2.7	42	75	11	126	31	20	25	22	1.98
1303187--1303211	11	2.3	11	100	0	50	28	0	36	36	1.58
1303413--1303442	13	2.4	13	94	5	53	43	0	0	56	0.99
1341046--1341117	20	3.7	20	83	14	96	84	15	0	0	0.62
1341047--1341115	13	5.2	13	83	11	86	86	13	0	0	0.56
1341054--1341115	7	9.1	7	88	11	94	87	12	0	0	0.55
1341054--1341115	27	2.3	27	91	5	99	87	12	0	0	0.55
1341047--1341115	1	69.0	1	73	0	57	86	13	0	0	0.56
1342207--1343421	55	21.3	56	78	10	1022	27	26	20	24	1.99
1342228--1343421	172	6.9	171	88	4	1572	27	26	20	25	1.99
1342228--1343421	514	2.3	509	86	6	1620	27	26	20	25	1.99
1343513--1343612	42	2.4	42	81	8	116	18	29	11	42	1.84
1344890--1345009	51	2.3	51	85	4	170	31	23	11	33	1.91
1344998--1345070	27	2.7	27	80	2	74	21	30	23	24	1.99
1345022--1345434	79	5.3	79	82	2	492	28	25	14	32	1.94
1345020--1345434	155	2.7	154	85	3	535	27	25	14	32	1.94
1345405--1345642	51	4.5	51	70	13	196	26	28	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345465--1345541	28	2.8	28	89	0	109	23	32	19	24	1.97
1345335--1345671	158	2.1	158	87	2	489	28	28	13	29	1.95
1349676--1350066	28	13.2	31	80	6	123	24	17	28	29	1.97
1349745--1350090	28	11.9	28	82	6	386	25	16	28	29	1.97
1349745--1350090	57	6.0	57	83	4	390	25	16	28	29	1.97
1356172--1356407	97	2.4	97	90	2	375	25	11	31	31	1.91
1356794--1356819	13	2.0	13	100	0	52	38	15	15	30	1.88
1359039--1359083	21	2.1	21	84	8	56	53	4	20	22	1.63
1360887--1360917	15	2.1	15	93	0	53	48	16	22	12	1.80
1362995--1363020	13	2.0	13	100	0	52	30	15	15	38	1.88
1365523--1365548	13	2.0	13	100	0	52	38	15	15	30	1.88
1372165--1372218	20	2.7	20	100	0	108	35	14	14	35	1.88
1372254--1372281	13	2.2	13	100	0	56	39	17	14	28	1.89
1373944--1373985	20	2.0	21	86	4	59	0	14	4	80	0.86
1375075--1375344	149	1.8	151	83	5	370	41	12	11	34	1.80
1375336--1375632	164	1.8	164	85	2	418	39	10	13	37	1.79
1376416--1376455	21	1.9	21	89	0	62	7	10	0	82	0.84
1376428--1376478	12	3.8	13	80	14	50	1	19	0	78	0.85
1376942--1377383	165	2.7	164	81	6	405	51	7	10	30	1.64
1377083--1377384	165	1.8	167	90	1	491	50	8	10	30	1.67
1378423--1379289	85	10.2	85	74	9	449	31	19	28	20	1.97
1378566--1378984	127	3.3	126	80	4	360	31	19	29	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1378568--1379316	128	5.9	128	75	6	448	31	19	28	19	1.97
1379098--1379372	128	2.2	128	78	7	283	32	18	28	20	1.96
1378467--1379437	42	22.9	43	74	7	452	32	19	28	20	1.96
1379988--1380152	78	2.1	78	87	0	231	27	12	27	32	1.92
1380797--1380975	53	3.2	55	83	8	202	18	17	11	51	1.75
1382695--1382735	22	1.9	21	85	14	57	21	31	12	34	1.91
1392823--1393072	129	1.9	130	88	2	378	40	12	12	35	1.80
1398347--1398785	165	2.6	166	81	6	460	50	8	13	27	1.71
1403152--1403177	13	2.0	13	100	0	52	30	15	15	38	1.88
1411165--1411267	50	2.1	51	90	3	165	49	5	21	23	1.71
1411899--1411951	19	2.7	20	85	2	81	30	16	15	37	1.90
1413910--1414270	47	7.7	47	74	8	247	41	18	20	19	1.90
1413912--1414293	187	2.1	184	86	2	523	42	17	20	19	1.89
1424086--1424204	42	2.8	42	88	0	175	9	43	3	43	1.53
1426481--1426723	128	1.9	128	86	1	344	41	11	10	35	1.76
1427049--1427093	21	2.1	22	88	8	67	48	6	11	33	1.65
1430784--1430860	32	2.4	32	95	0	145	37	12	9	40	1.76
1430797--1430857	19	3.5	19	66	25	62	40	13	6	39	1.70
1432570--1432633	33	2.0	33	84	3	85	31	15	12	40	1.85
1433144--1433235	36	2.7	33	78	15	107	30	14	26	29	1.95
1433944--1434221	146	1.9	146	82	5	348	47	8	11	32	1.69
1435668--1436267	47	12.9	45	77	9	419	42	16	20	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435688--1436212	231	2.3	229	82	8	623	43	17	19	20	1.89
1435674--1436283	187	3.3	185	80	7	639	42	16	20	21	1.89
1439530--1439605	32	2.4	32	93	0	125	34	17	17	31	1.93
1439543--1439605	19	3.6	19	72	24	66	34	17	15	31	1.92
1440261--1441468	52	24.9	49	75	11	999	32	18	25	23	1.97
1440366--1441468	101	11.4	101	82	9	1153	32	18	25	23	1.97
1440717--1441470	43	16.1	44	70	17	438	31	18	25	23	1.98
1440717--1441468	91	8.0	92	77	12	604	31	18	25	23	1.98
1440870--1441043	92	1.9	92	86	3	253	28	20	28	22	1.98
1440953--1441468	48	10.9	48	75	12	433	31	19	26	23	1.98
1441005--1441466	178	2.5	181	83	7	554	30	19	25	24	1.98
1441544--1441781	34	7.3	32	70	11	110	34	11	31	22	1.90
1441681--1441761	37	2.2	37	84	0	99	41	9	28	19	1.83
1441725--1441786	31	2.0	31	87	6	90	33	14	27	24	1.94
1444323--1444372	19	2.5	20	83	3	66	34	22	16	28	1.95
1451071--1451113	20	2.2	20	95	0	77	13	41	30	13	1.84
1451077--1451121	20	2.2	20	88	0	63	20	42	26	11	1.85
1452502--1452550	24	2.0	24	100	0	98	32	0	20	46	1.51
1453227--1453294	33	2.1	32	86	8	93	35	16	14	33	1.89
1453317--1453366	20	2.3	21	76	16	57	34	22	10	34	1.87
1454558--1454591	10	3.3	10	84	8	50	0	14	0	85	0.60
1454558--1454591	11	3.2	11	87	4	52	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1454540--1454600	27	2.3	27	83	11	81	4	13	1	80	0.95
1454558--1454600	21	2.0	21	82	8	52	2	16	0	81	0.79
1456496--1456562	35	1.9	34	88	8	100	35	10	22	31	1.88
1457390--1457415	13	2.0	13	100	0	52	30	15	15	38	1.88
1458114--1458157	21	2.1	21	83	8	54	25	31	4	38	1.76
1459961--1459986	13	2.0	13	100	0	52	38	15	15	30	1.88
1462065--1462095	15	2.1	15	93	0	53	12	22	16	48	1.80
1463899--1463943	21	2.1	21	84	8	56	22	20	4	53	1.63
1466159--1466184	13	2.0	13	100	0	52	30	15	15	38	1.88
1472036--1472125	28	3.5	28	64	22	79	36	20	16	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23