genome.fa.s129.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  7  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923664--923878	90	2.4	90	84	4	272	41	13	15	29	1.86
923805--923899	40	2.4	40	87	0	136	41	16	11	30	1.84
923824--923918	20	4.8	19	78	8	91	37	16	10	34	1.84
924835--924901	32	2.1	32	94	0	116	19	22	29	28	1.98
924932--925397	28	16.5	28	83	3	547	22	18	29	29	1.97
926654--926715	8	7.8	8	75	13	65	3	0	14	82	0.80
937869--937925	13	3.9	13	76	24	60	36	14	15	33	1.88
937846--937944	19	5.8	18	70	28	83	35	12	16	36	1.85
937849--937949	32	3.1	32	95	1	175	35	11	16	35	1.86
937849--937977	65	2.0	65	82	8	156	37	13	16	32	1.88
937987--938011	13	1.9	13	100	0	50	40	16	8	36	1.77
943761--943909	52	2.9	51	87	4	217	30	17	18	33	1.94
943898--943922	13	1.9	13	100	0	50	36	16	16	32	1.90
943963--944029	33	2.0	33	88	0	98	40	13	11	34	1.81
943985--944009	13	1.9	13	100	0	50	32	16	16	36	1.90
944236--944264	9	3.3	9	90	9	51	68	10	0	20	1.18
945560--945591	15	2.1	15	100	0	64	25	6	25	43	1.77
947950--947975	13	2.0	13	100	0	52	30	15	15	38	1.88
947929--947993	32	2.0	33	90	6	105	29	12	13	44	1.81
947929--947993	19	3.6	19	71	26	61	29	12	13	44	1.81
950520--950557	13	2.9	13	96	0	67	31	15	18	34	1.92
952638--952668	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954234--954529	147	2.0	147	100	0	592	30	13	14	40	1.85
954618--954662	21	2.1	21	84	8	56	22	20	4	53	1.63
956881--956906	13	2.0	13	100	0	52	30	15	15	38	1.88
956860--956924	32	2.0	33	93	6	114	27	12	15	44	1.82
956860--956924	19	3.6	19	73	26	70	27	12	15	44	1.82
957898--958124	51	4.7	51	76	13	253	42	13	16	26	1.86
957999--958073	20	3.8	20	77	7	80	41	17	14	26	1.88
957955--958129	91	1.9	91	97	0	332	42	15	16	25	1.87
958088--958125	20	1.9	20	94	0	67	39	13	18	28	1.88
963190--963244	19	2.8	20	81	10	69	38	14	14	32	1.87
965495--965520	13	2.0	13	100	0	52	38	15	15	30	1.88
965477--965540	32	2.0	33	87	3	94	40	17	14	28	1.88
967737--967781	21	2.1	22	88	8	67	55	4	17	22	1.60
969586--969616	15	2.1	15	93	0	53	48	16	22	12	1.80
971841--971886	21	2.2	20	81	11	58	32	19	4	43	1.71
974265--974290	13	2.0	13	100	0	52	38	15	15	30	1.88
976486--976530	21	2.1	22	88	8	67	55	4	17	22	1.60
981779--981837	29	2.1	28	83	3	73	37	20	5	37	1.75
982506--982536	11	2.7	12	95	5	55	0	19	0	80	0.71
982895--983785	165	5.5	165	76	12	700	51	9	10	27	1.68
982995--983470	148	3.1	147	80	9	438	50	9	11	29	1.69
983149--983785	167	3.8	166	85	5	799	53	7	11	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983195--983785	165	3.6	165	87	5	768	53	7	11	27	1.64
987450--987640	60	3.2	60	73	9	165	30	10	21	37	1.87
988826--988858	2	16.5	2	100	0	66	48	0	0	51	1.00
989556--989605	21	2.4	21	96	0	91	34	2	20	44	1.63
998036--998060	13	1.9	13	100	0	50	40	16	8	36	1.77
998109--998166	19	3.1	18	88	11	89	32	15	17	34	1.91
998150--998176	13	2.1	13	100	0	54	40	14	14	29	1.86
1000207--1000246	20	2.0	20	85	0	53	22	25	32	20	1.98
1010375--1010400	13	2.0	13	100	0	52	38	15	15	30	1.88
1016391--1016449	21	2.8	21	97	0	109	32	10	16	40	1.82
1016477--1016651	13	10.9	17	64	30	75	34	19	12	33	1.89
1016470--1016650	32	5.7	32	96	0	326	34	19	12	32	1.90
1018614--1018666	20	2.6	20	84	3	70	33	13	16	35	1.88
1025246--1025364	52	2.3	51	94	1	202	30	17	17	34	1.93
1025246--1025384	52	2.7	52	85	5	158	30	17	17	33	1.94
1025373--1025397	13	1.9	13	100	0	50	36	16	16	32	1.90
1025438--1025504	33	2.0	33	88	0	98	40	13	11	34	1.81
1025460--1025484	13	1.9	13	100	0	50	32	16	16	36	1.90
1026264--1026475	52	4.2	52	75	12	199	33	16	25	24	1.96
1026371--1026460	43	2.1	43	91	0	144	30	17	25	26	1.98
1026495--1026634	30	4.9	29	86	6	187	20	17	30	32	1.95
1026466--1026634	85	2.0	86	82	4	207	20	17	30	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026464--1026634	30	5.9	29	84	7	177	21	17	30	30	1.96
1026671--1026758	30	3.0	30	83	3	106	23	17	34	25	1.96
1028201--1028295	1	95.0	1	76	0	64	2	4	8	85	0.81
1028201--1028296	17	6.0	15	78	14	86	2	4	9	84	0.83
1028199--1028293	47	2.0	48	86	10	133	2	6	8	83	0.89
1028220--1028297	32	2.5	31	84	12	97	1	5	10	83	0.86
1042170--1042288	52	2.3	51	94	1	202	30	17	17	34	1.93
1042170--1042308	52	2.7	52	85	5	158	30	17	17	33	1.94
1042297--1042321	13	1.9	13	100	0	50	36	16	16	32	1.90
1042362--1042428	33	2.0	33	88	0	98	40	13	11	34	1.81
1042384--1042408	13	1.9	13	100	0	50	32	16	16	36	1.90
1043901--1044031	52	2.5	52	89	0	208	29	17	19	34	1.94
1044019--1044044	13	2.0	13	100	0	52	38	15	15	30	1.88
1044089--1044172	13	5.5	13	71	28	60	35	17	13	33	1.89
1044097--1044159	19	3.7	18	76	24	73	36	17	12	33	1.88
1044089--1044174	32	2.7	32	96	0	163	37	17	12	32	1.88
1050621--1050650	12	2.5	12	94	0	51	33	6	26	33	1.83
1051735--1051811	21	3.7	21	92	1	120	33	14	14	37	1.86
1053572--1054108	94	5.7	94	75	8	437	23	23	14	38	1.91
1053572--1054079	47	10.8	47	79	5	389	23	22	14	38	1.92
1054169--1054445	85	3.3	85	83	5	346	20	30	14	34	1.92
1054289--1054423	43	3.2	43	65	9	105	23	30	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055334--1056368	164	6.3	164	81	5	1055	31	9	7	51	1.63
1055430--1056373	329	2.9	327	83	5	1102	30	9	8	51	1.63
1058108--1058165	19	3.1	18	85	11	80	36	15	15	32	1.89
1058109--1058164	20	2.8	20	89	7	80	33	16	16	33	1.91
1058209--1058261	13	4.5	13	69	26	55	33	13	15	37	1.86
1058193--1058261	33	2.1	33	89	5	104	31	13	17	37	1.88
1058688--1058732	23	2.0	23	90	0	72	24	4	31	40	1.75
1059869--1059904	12	3.0	12	87	0	54	47	0	22	30	1.52
1064115--1064524	205	2.0	205	99	0	802	40	19	16	23	1.90
1068427--1068452	13	2.0	13	100	0	52	30	15	15	38	1.88
1069160--1069203	21	2.1	21	83	8	54	25	31	4	38	1.76
1073078--1073108	15	2.1	15	93	0	53	12	22	16	48	1.80
1074912--1074956	21	2.1	21	84	8	56	22	20	4	53	1.63
1077172--1077197	13	2.0	13	100	0	52	30	15	15	38	1.88
1079599--1079669	20	3.6	20	88	1	108	14	32	29	23	1.94
1081077--1081118	22	1.9	22	95	0	75	38	4	35	21	1.75
1081728--1081786	20	3.1	19	87	2	82	38	15	11	33	1.84
1081829--1081859	13	2.4	13	94	0	53	35	9	12	41	1.76
1082864--1082941	24	3.2	24	67	8	68	43	2	21	32	1.66
1083581--1083607	13	2.1	13	100	0	54	29	14	14	40	1.86
1083562--1083626	32	2.0	32	90	3	103	29	15	15	40	1.88
1083591--1083648	19	3.1	18	88	11	89	34	15	17	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083592--1083647	20	2.8	20	92	7	89	32	16	17	33	1.92
1083676--1083729	20	2.7	20	88	5	74	33	12	16	37	1.87
1089563--1090712	28	40.8	28	80	6	901	27	16	27	28	1.97
1089563--1090631	113	9.5	113	77	6	902	27	17	26	28	1.97
1090196--1091110	27	33.1	27	84	5	702	28	15	29	26	1.96
1089563--1091075	84	18.1	85	80	7	901	27	16	28	27	1.97
1092462--1092532	37	1.9	37	83	11	92	8	16	7	67	1.39
1096416--1096698	154	1.8	154	93	0	494	30	19	25	24	1.98
1098823--1098939	20	5.7	20	79	6	126	37	15	16	30	1.90
1099570--1099623	20	2.7	20	83	13	58	29	16	12	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23