genome.fa.s129.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  3  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317848--317883	18	2.0	18	88	0	54	41	8	0	50	1.33
320067--320091	13	1.9	13	100	0	50	32	8	16	44	1.76
320128--320165	20	1.9	20	94	0	67	26	21	15	36	1.93
320148--320177	13	2.3	13	100	0	60	30	16	13	40	1.87
322456--322638	51	3.6	51	92	0	294	30	24	11	33	1.91
322573--322857	79	3.6	78	76	9	247	28	26	12	33	1.92
323207--323389	51	3.6	51	91	0	285	31	24	10	33	1.90
322254--324138	751	2.5	751	96	0	3499	29	26	13	31	1.94
323322--323608	79	3.6	77	78	10	292	27	26	12	33	1.93
323958--324190	51	4.6	51	91	1	369	30	25	11	32	1.91
324121--324357	79	3.0	78	77	5	237	26	25	13	34	1.93
328739--328824	13	7.5	13	69	28	70	34	17	13	33	1.89
328739--328840	33	3.1	33	94	2	170	35	18	13	32	1.90
328774--328839	20	3.7	20	73	26	83	33	18	15	33	1.92
328869--328921	19	2.7	20	85	2	72	37	20	13	28	1.90
328909--329062	71	2.2	71	95	2	274	33	20	14	31	1.93
329495--329589	22	4.4	22	80	5	113	27	31	3	37	1.72
331581--331623	20	2.2	20	88	8	63	46	20	2	30	1.63
333895--333959	21	3.6	19	73	26	70	43	15	12	29	1.83
333913--333938	13	2.0	13	100	0	52	38	15	15	30	1.88
333895--333959	34	2.0	33	93	6	114	43	15	12	29	1.83
335665--335703	20	2.0	19	95	5	69	35	23	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335713--335737	13	1.9	13	100	0	50	32	16	16	36	1.90
335725--335777	21	2.5	22	82	11	67	39	16	15	28	1.89
335819--335881	33	1.9	33	83	6	83	39	15	12	31	1.85
342018--342055	13	2.9	13	96	0	67	31	15	18	34	1.92
342498--342542	20	2.1	21	84	8	56	17	46	28	6	1.73
343914--343945	16	2.0	16	100	0	64	37	6	18	37	1.76
344258--344301	14	3.0	14	86	6	52	45	11	6	36	1.67
344257--344302	16	3.0	16	84	9	60	43	13	8	34	1.74
350845--351389	155	3.5	155	82	2	558	39	18	16	25	1.91
351613--352023	164	2.4	171	80	9	463	40	10	10	37	1.75
353130--353159	15	1.9	16	93	6	53	10	10	0	80	0.92
353317--353353	14	2.6	15	91	8	60	64	0	0	35	0.94
355075--355179	28	3.8	28	93	2	167	30	17	28	23	1.97
355167--355388	53	4.3	50	79	10	207	33	12	24	29	1.92
355194--355388	53	3.8	52	84	4	243	33	12	23	29	1.92
355205--355393	103	1.8	103	83	3	252	35	13	22	27	1.92
355477--355575	51	1.9	52	91	2	164	32	11	26	30	1.91
355453--355578	51	2.5	50	81	8	155	30	11	27	30	1.91
357018--357231	50	4.3	50	95	0	392	15	26	14	43	1.85
357836--358531	62	11.4	62	88	5	974	26	20	28	24	1.99
357836--358535	122	5.7	122	86	6	958	27	20	27	24	1.99
357843--358530	184	3.8	184	93	2	1142	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358449--358538	27	3.2	28	63	7	67	28	20	26	24	1.99
371945--372026	28	2.9	28	89	3	112	30	17	28	24	1.97
372009--372231	53	4.3	51	83	5	243	32	13	25	29	1.93
372036--372231	53	3.8	51	86	3	250	33	13	24	29	1.93
372048--372236	103	1.8	106	86	3	276	35	14	23	26	1.93
372265--372341	28	2.8	28	86	7	95	25	19	31	23	1.98
372325--372445	51	2.4	51	83	10	149	31	12	25	30	1.92
372035--372446	53	7.9	51	73	14	245	33	13	25	28	1.93
373375--373445	18	3.9	18	77	14	74	7	21	38	33	1.80
373375--373474	43	2.5	39	84	12	116	7	19	39	35	1.78
373995--374208	50	4.3	50	94	1	385	15	26	14	43	1.85
377261--377297	2	18.5	2	100	0	74	48	0	0	51	1.00
377868--377892	12	2.1	12	100	0	50	32	0	0	68	0.90
381398--381451	28	1.9	28	84	0	72	55	0	0	44	0.99
381396--381452	21	2.8	20	86	10	71	52	0	0	47	1.00
381425--381456	15	2.1	15	94	0	55	53	0	0	46	1.00
381588--381627	21	1.9	21	89	0	62	42	0	2	55	1.13
381664--381717	14	3.9	14	82	2	65	44	0	3	51	1.19
381756--381807	21	2.3	23	81	15	65	48	3	0	48	1.20
382069--382137	31	2.3	31	89	2	104	53	8	1	36	1.41
385088--385141	15	3.6	14	81	16	63	77	1	3	16	1.00
385088--385156	16	4.5	15	76	18	61	75	4	2	17	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385088--385169	31	2.7	30	78	16	87	75	3	4	15	1.11
385116--385156	15	2.6	16	85	11	50	78	4	0	17	0.93
385571--385685	58	2.0	58	98	0	221	53	5	11	30	1.59
387220--387288	16	4.3	16	78	10	61	20	4	24	50	1.66
388785--388835	9	5.3	9	80	19	59	82	0	13	3	0.81
388796--388838	20	2.1	21	91	4	70	81	0	16	2	0.79
388774--388838	8	7.5	8	74	19	51	80	0	16	3	0.85
389475--389541	37	1.9	35	88	11	102	29	25	11	32	1.92
389982--390041	26	2.5	24	75	15	70	33	10	23	33	1.88
390029--390059	10	3.1	10	95	0	53	41	3	29	25	1.71
390083--390219	53	2.6	53	91	1	220	27	16	18	37	1.92
393356--393476	52	2.3	52	95	0	215	29	18	17	34	1.94
393356--393496	52	2.7	52	87	4	196	31	17	17	33	1.94
393485--393509	13	1.9	13	100	0	50	36	16	16	32	1.90
393575--393599	13	1.9	13	100	0	50	32	16	16	36	1.90
393553--393619	33	2.0	33	88	0	98	40	13	11	34	1.81
394291--394316	13	2.0	13	100	0	52	30	15	15	38	1.88
394355--394441	20	4.7	19	73	21	78	28	14	13	42	1.85
394355--394421	33	2.0	33	88	5	100	26	14	14	43	1.85
394372--394402	13	2.4	13	94	0	53	29	12	16	41	1.85
396730--396856	51	2.5	51	87	5	179	29	24	11	35	1.90
396792--396939	79	1.9	79	85	0	206	29	27	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396872--396990	51	2.3	52	85	4	170	30	26	11	31	1.92
396830--397168	130	2.6	128	79	6	398	28	25	12	34	1.92
398376--398492	57	2.1	57	96	0	216	26	17	13	41	1.87
398831--399187	58	6.1	56	80	10	267	26	12	13	47	1.78
398831--399187	115	3.1	115	77	11	281	26	12	13	47	1.78
400958--401023	29	2.3	30	78	7	82	39	15	21	24	1.91
400979--401257	58	4.8	57	73	7	222	45	13	15	26	1.82
401934--401971	18	2.1	18	90	0	58	0	23	0	76	0.79
401945--401996	12	4.3	12	78	11	54	0	19	0	80	0.71
401946--401989	14	3.2	13	83	6	52	0	15	0	84	0.63
401939--401989	26	2.0	26	88	0	75	0	17	0	82	0.67
401939--401981	8	5.2	8	81	15	52	0	16	0	83	0.64
401946--402004	28	2.2	26	81	6	64	0	15	3	81	0.82
403419--403475	20	3.0	20	69	25	52	49	0	0	50	1.00
404346--404371	13	2.0	13	100	0	52	30	15	15	38	1.88
404325--404389	32	2.0	32	87	6	94	27	10	15	46	1.79
404442--404516	20	3.8	20	92	3	107	28	16	17	38	1.91
406939--406976	13	2.9	13	96	0	67	31	15	18	34	1.92
409047--409082	15	2.4	15	90	0	54	13	19	16	50	1.79
413145--413170	13	2.0	13	100	0	52	30	15	15	38	1.88
413124--413188	32	2.0	34	90	6	107	27	12	15	44	1.82
413240--413295	20	2.8	20	83	5	69	30	17	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415630--415739	49	2.2	49	93	0	184	22	26	0	50	1.55
417558--417622	33	2.0	33	87	0	94	41	12	15	30	1.84
417632--417671	20	2.0	21	95	5	73	30	15	15	40	1.87
422317--422389	20	3.6	20	81	3	101	31	19	13	35	1.91
422296--422389	41	2.3	41	96	0	170	30	18	12	38	1.88
422296--422371	21	3.7	21	78	3	91	30	17	11	40	1.85
423026--423072	23	2.0	23	100	0	94	51	12	4	31	1.59
424857--424895	13	3.0	13	96	0	69	35	15	17	30	1.91
424881--424960	20	3.8	20	75	18	72	45	13	13	27	1.82
426975--427005	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23