genome.fa.s129.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Length:  3652842

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3553773--3553801	12	2.5	12	94	5	51	13	0	6	79	0.93
3553732--3553786	8	6.8	8	89	8	76	10	0	9	80	0.92
3566932--3566957	13	2.0	13	100	0	52	46	23	0	30	1.53
3569084--3569289	97	2.1	96	88	2	306	36	13	22	27	1.91
3571460--3571502	17	2.5	17	92	0	68	44	2	37	16	1.60
3571769--3571817	20	2.5	20	82	0	53	34	16	10	38	1.82
3572355--3572408	21	2.6	21	93	0	90	40	29	0	29	1.57
3572355--3572424	21	3.3	21	86	7	72	38	28	1	31	1.66
3573575--3573614	3	13.3	3	100	0	80	32	0	0	67	0.91
3573715--3573754	19	2.1	19	95	0	71	35	0	7	57	1.27
3573724--3573768	19	2.2	20	84	7	56	42	2	2	53	1.25
3574575--3574658	44	1.9	44	97	0	159	32	7	11	48	1.67
3577915--3577979	29	2.2	29	86	5	87	53	0	1	44	1.09
3579507--3579547	16	2.6	16	88	0	64	60	4	0	34	1.18
3579507--3579553	16	2.9	15	84	6	58	59	6	0	34	1.23
3581957--3581990	6	5.8	6	89	3	52	0	35	26	38	1.57
3582233--3582268	2	18.0	2	88	0	54	0	50	0	50	1.00
3582685--3582732	16	2.7	19	69	24	50	29	2	0	68	1.01
3582709--3582764	28	2.0	28	82	6	69	26	3	0	69	1.04
3582684--3582759	35	2.2	34	79	9	82	26	2	0	71	1.00
3584164--3584383	121	1.8	121	88	0	341	37	6	16	39	1.74
3584892--3584945	29	2.0	27	82	13	67	44	1	3	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3585230--3585366	34	4.1	32	75	15	118	31	21	10	36	1.88
3585703--3585741	20	2.0	20	94	0	69	43	12	7	35	1.72
3585859--3585883	13	1.9	13	100	0	50	36	16	16	32	1.90
3585841--3585904	33	2.0	32	87	3	92	42	12	14	31	1.82
3587405--3587460	11	5.9	10	76	19	50	69	0	28	1	0.98
3587402--3587462	26	2.4	24	80	17	70	72	0	26	1	0.94
3587424--3587455	6	5.7	6	85	14	50	68	0	31	0	0.90
3597629--3597731	24	4.3	24	72	20	74	46	0	1	50	1.19
3597682--3597747	18	3.3	19	74	22	64	45	0	3	51	1.16
3597697--3597742	24	1.9	24	86	0	65	47	0	2	50	1.13
3598306--3598373	24	3.0	21	66	14	55	41	10	5	42	1.63
3598296--3598393	46	2.1	48	90	7	166	38	8	6	46	1.58
3598298--3598393	47	2.1	45	94	3	165	38	8	6	46	1.59
3601559--3601806	97	2.6	97	86	2	338	35	17	12	33	1.88
3602778--3602817	17	2.3	18	91	8	66	37	12	10	40	1.77
3611232--3611310	31	2.4	32	89	6	115	55	11	20	12	1.67
3612307--3612347	2	20.5	2	100	0	82	51	0	0	48	1.00
3614715--3614755	2	20.5	2	100	0	82	51	0	48	0	1.00
3617408--3617441	17	1.9	18	88	5	52	23	2	8	64	1.36
3617680--3617706	14	1.9	14	100	0	54	48	0	0	51	1.00
3618008--3618035	14	2.0	14	100	0	56	28	0	0	71	0.86
3619878--3619948	35	2.0	35	94	0	124	32	23	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3623688--3623860	78	2.2	77	86	4	238	34	15	23	27	1.94
3623842--3623958	51	2.3	51	84	7	150	31	14	27	26	1.95
3623941--3624042	28	3.6	28	85	10	145	25	21	30	22	1.99
3626392--3626494	33	3.1	33	95	0	179	40	12	17	29	1.86
3626372--3626511	53	2.6	52	83	8	167	41	12	16	29	1.85
3626420--3626474	13	4.7	13	75	25	68	40	14	18	27	1.89
3626372--3626511	20	7.7	19	70	23	97	41	12	16	29	1.85
3627074--3627115	21	2.0	21	100	0	84	47	4	23	23	1.70
3632792--3633417	319	2.0	320	89	1	970	33	18	14	34	1.91
3636015--3636057	23	1.9	22	85	4	59	55	2	20	20	1.54
3645046--3645165	62	1.9	62	89	0	186	35	15	15	35	1.88
3645895--3646101	104	2.0	106	86	5	296	22	12	19	45	1.84
3648083--3648115	17	2.1	16	88	11	50	42	6	12	39	1.67
3648386--3648503	31	3.6	31	78	9	128	30	24	12	32	1.92
3648432--3648500	36	1.9	35	85	2	93	30	26	8	34	1.86
3648853--3648912	20	3.0	20	97	0	111	41	15	8	35	1.77
3649014--3649078	33	2.0	33	87	3	96	38	13	15	32	1.87
3649689--3649747	27	2.1	27	85	14	77	22	16	15	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!