genome.fa.s14.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  11  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1726016--1726068	20	2.7	20	100	0	106	33	20	15	30	1.93
1728514--1728551	13	2.9	13	96	0	67	31	15	18	34	1.92
1730409--1730439	15	2.1	15	93	0	53	12	22	16	48	1.80
1734509--1734534	13	2.0	13	100	0	52	30	15	15	38	1.88
1734488--1734552	32	2.0	33	90	6	105	29	12	13	44	1.81
1747524--1747822	92	3.2	92	83	1	377	29	25	15	30	1.95
1748419--1748585	46	3.7	45	85	5	210	20	25	11	42	1.86
1748664--1748788	40	3.1	40	75	6	126	20	24	13	42	1.87
1748664--1748820	81	2.0	81	80	3	183	19	23	14	42	1.88
1748896--1749039	41	3.3	43	73	11	125	17	22	13	46	1.82
1748840--1749040	85	2.4	87	80	6	214	19	22	12	44	1.85
1748891--1749030	44	3.2	44	74	9	128	18	23	12	45	1.83
1748891--1749087	85	2.3	86	79	7	188	17	22	13	46	1.82
1750620--1750649	14	2.1	15	93	6	53	26	3	0	70	1.03
1750616--1750655	20	2.1	19	86	13	55	27	2	0	70	1.01
1750971--1751013	12	3.6	12	84	6	52	69	0	27	2	1.00
1750980--1751032	23	2.2	24	78	15	56	73	1	20	3	1.08
1751385--1751416	14	2.4	14	94	5	57	78	0	0	21	0.76
1751813--1751844	16	2.0	16	93	0	55	21	31	15	31	1.95
1758186--1758252	33	2.0	33	88	0	98	34	11	13	40	1.81
1758206--1758230	13	1.9	13	100	0	50	36	16	16	32	1.90
1758293--1758317	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758326--1758453	52	2.5	52	94	3	224	33	17	17	30	1.94
1765326--1765361	18	2.1	17	89	5	54	86	11	2	0	0.68
1765602--1765632	16	1.9	16	93	0	53	87	6	6	0	0.68
1766591--1766735	31	4.7	31	85	10	199	25	30	19	24	1.98
1766591--1766766	62	2.9	62	85	7	218	25	30	18	26	1.98
1766720--1767278	34	17.6	33	76	14	418	20	33	13	32	1.91
1766743--1767091	62	5.5	62	88	6	461	20	32	13	32	1.92
1766743--1767174	125	3.5	125	84	10	498	21	34	13	31	1.92
1767121--1767174	27	2.0	27	96	0	99	22	42	14	20	1.88
1766715--1767273	126	4.4	124	80	12	422	21	33	13	32	1.92
1767283--1767391	32	3.4	32	87	5	168	28	36	17	17	1.93
1767384--1767672	49	6.0	49	84	7	383	25	26	17	29	1.98
1767528--1767617	43	2.1	43	95	0	162	25	24	18	31	1.98
1767571--1767681	52	2.1	52	86	3	152	26	27	14	32	1.95
1767579--1767715	52	2.6	52	82	6	143	27	27	16	28	1.97
1771674--1771740	33	2.0	33	88	0	98	34	11	13	40	1.81
1771694--1771718	13	1.9	13	100	0	50	36	16	16	32	1.90
1771781--1771805	13	1.9	13	100	0	50	32	16	16	36	1.90
1771814--1771941	52	2.5	52	94	3	224	33	17	17	30	1.94
1778814--1779033	32	6.9	32	81	6	241	24	26	13	35	1.93
1778804--1778997	63	3.1	62	83	6	230	23	28	14	33	1.94
1778814--1779002	95	2.0	94	90	1	297	23	26	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1778814--1779042	63	3.6	62	80	6	203	25	26	13	34	1.93
1779061--1779617	27	18.0	32	72	18	389	20	31	13	34	1.91
1779061--1779523	95	5.0	94	76	16	295	20	31	12	35	1.90
1779047--1779353	60	5.1	60	83	8	374	21	32	12	32	1.91
1779059--1779616	215	2.6	217	87	2	788	20	31	13	34	1.91
1779334--1779563	61	3.8	61	87	3	311	19	30	13	36	1.90
1779590--1779714	29	4.3	30	80	7	141	33	33	16	16	1.91
1779590--1779714	57	2.2	58	82	5	146	33	33	16	16	1.91
1779734--1780693	49	20.8	49	71	16	532	25	25	18	30	1.98
1780075--1780494	39	9.8	39	72	18	266	26	25	19	28	1.99
1780022--1780548	87	6.0	87	90	1	775	26	25	19	29	1.98
1780022--1780650	175	3.5	175	86	5	796	25	25	18	29	1.98
1779924--1780548	262	2.3	263	87	3	865	26	25	18	29	1.98
1784546--1784583	18	2.1	18	100	0	76	28	21	26	23	1.99
1787523--1787562	13	3.1	13	77	0	53	35	12	12	40	1.81
1790062--1790123	20	3.2	20	79	11	74	35	17	14	32	1.90
1796450--1796489	20	2.0	21	90	5	64	42	10	20	27	1.83
1796450--1796504	21	2.7	20	82	5	65	38	9	18	34	1.82
1799036--1799397	79	4.5	79	78	4	325	28	27	11	33	1.91
1805052--1805095	18	2.4	18	85	11	54	70	2	25	2	1.10
1805047--1805104	26	2.2	26	87	0	80	70	1	25	1	1.06
1807351--1807748	72	5.5	72	93	0	679	43	21	7	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1808160--1808201	15	2.8	15	85	0	57	19	9	47	23	1.78
1808616--1808684	7	9.9	7	98	0	120	14	28	31	24	1.95
1810830--1810854	13	1.9	13	100	0	50	36	16	16	32	1.90
1812743--1812807	33	1.9	34	87	9	98	41	0	0	58	0.98
1812761--1812802	8	5.0	9	77	16	54	40	0	0	59	0.97
1823005--1823031	11	2.5	11	100	0	54	0	7	0	92	0.38
1824569--1824610	20	2.0	23	86	13	63	23	0	11	64	1.27
1836200--1836261	32	1.9	32	90	0	97	33	20	11	33	1.89
1840115--1840212	16	6.7	15	75	17	82	50	5	0	44	1.24
1840153--1840210	28	2.1	28	90	0	89	55	1	0	43	1.10
1840624--1840695	28	2.5	30	84	6	96	61	1	1	36	1.14
1841226--1841296	25	2.8	26	81	10	76	57	1	0	40	1.07
1841232--1841296	13	5.1	13	75	12	55	56	1	0	41	1.08
1843566--1843613	16	2.8	17	87	6	62	43	2	0	54	1.12
1844009--1844037	10	2.9	10	100	0	58	20	0	0	79	0.74
1844069--1844130	31	2.1	28	82	8	70	53	0	0	46	1.00
1844201--1844231	16	1.9	16	100	0	62	58	0	0	41	0.98
1844202--1844237	16	2.2	16	90	0	54	61	0	0	38	0.96
1844351--1844461	30	3.7	29	78	17	111	48	1	3	45	1.30
1844360--1844456	28	3.3	30	83	12	112	50	1	2	46	1.20
1845735--1845760	13	2.0	13	100	0	52	30	0	15	53	1.42
1845809--1845869	19	3.3	19	84	15	83	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1845790--1845867	41	1.9	41	81	5	95	15	2	2	79	0.95
1845818--1845870	15	3.8	13	77	18	52	18	0	0	81	0.70
1845809--1845866	11	5.8	10	78	13	57	18	0	0	81	0.70
1846550--1846672	16	7.7	16	67	7	61	39	2	4	54	1.33
1846653--1846683	11	2.9	11	95	4	55	48	0	0	51	1.00
1853142--1853172	16	1.9	16	93	0	53	38	22	3	35	1.71
1856534--1856792	50	5.2	50	90	4	407	30	19	21	28	1.97
1856534--1856792	100	2.6	100	95	1	466	30	19	21	28	1.97
1861191--1861449	50	5.2	50	91	4	416	30	19	21	28	1.98
1861191--1861449	100	2.6	100	96	1	475	30	19	21	28	1.98
1868748--1868781	2	17.0	2	100	0	68	50	0	0	50	1.00
1869908--1869955	24	2.0	24	92	4	80	35	14	8	41	1.76
1871227--1871266	20	2.0	20	90	0	62	17	17	27	37	1.92
1874167--1874210	15	2.8	16	80	12	56	47	6	9	36	1.62
1875902--1875930	14	2.1	14	100	0	58	79	0	6	13	0.93
1881691--1881728	16	2.4	16	84	16	53	47	5	5	42	1.48
1891789--1891825	2	18.5	2	88	0	56	0	0	43	56	0.99
1892460--1892503	16	2.6	16	82	7	52	61	9	22	6	1.50
1893088--1893135	24	2.0	25	84	12	64	14	27	10	47	1.76
1896492--1896529	18	2.1	19	90	5	60	39	0	0	60	0.97
1896586--1896615	16	1.9	15	93	6	51	53	3	0	43	1.17
1897653--1897741	12	6.3	15	70	27	63	58	3	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897653--1897741	27	3.2	26	74	20	81	58	3	0	38	1.15
1897629--1897762	57	2.3	56	74	14	130	59	2	0	37	1.15
1898183--1898231	6	8.8	6	85	14	52	65	0	0	34	0.93
1900587--1900637	21	2.5	21	93	3	86	58	9	21	9	1.58
1900643--1900685	16	2.7	16	81	0	50	44	4	0	51	1.22
1902276--1902317	22	1.9	22	100	0	84	23	14	14	47	1.80
1903652--1903785	20	6.6	20	69	14	69	35	16	17	29	1.92
1908865--1909008	73	2.0	72	91	2	236	37	16	12	33	1.86
1909998--1910644	333	1.9	332	97	0	1231	36	17	13	32	1.89
1914553--1914610	29	1.9	31	82	6	75	48	5	10	36	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17