genome.fa.s14.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  7  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172414--1172492	20	3.7	21	75	15	72	26	13	15	44	1.84
1172479--1172517	13	3.0	13	96	0	69	30	17	15	35	1.91
1174960--1175032	20	3.6	20	81	3	101	35	13	19	31	1.91
1174960--1175054	41	2.3	42	96	1	174	40	12	17	29	1.87
1175093--1175118	13	2.0	13	100	0	52	38	15	15	30	1.88
1177929--1177954	13	2.0	13	100	0	52	30	15	15	38	1.88
1177993--1178068	21	3.7	21	80	3	100	28	19	11	39	1.87
1178013--1178086	20	3.7	20	78	3	94	31	21	13	33	1.92
1177993--1178086	41	2.3	41	98	0	179	29	20	12	37	1.90
1184221--1184255	6	6.2	6	90	9	56	88	11	0	0	0.51
1184221--1184255	17	2.1	17	89	10	54	88	11	0	0	0.51
1185169--1185194	13	2.0	13	100	0	52	38	15	15	30	1.88
1185151--1185214	32	2.0	33	90	3	103	42	15	14	28	1.86
1185693--1185717	13	1.9	13	100	0	50	36	16	16	32	1.90
1186006--1186032	12	2.2	12	100	0	54	0	7	37	55	1.28
1186423--1186893	235	2.0	235	100	0	942	36	7	27	29	1.83
1187959--1187984	13	2.0	13	100	0	52	38	15	15	30	1.88
1187941--1188004	32	2.0	33	90	3	103	42	15	14	28	1.86
1189466--1189622	31	5.1	30	81	8	163	24	30	14	30	1.94
1189466--1189649	31	5.9	30	81	8	154	25	30	14	29	1.94
1189532--1190112	34	17.3	34	80	7	496	20	31	12	35	1.90
1189533--1190110	133	4.3	133	85	5	643	19	31	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189988--1190094	36	3.0	36	98	0	205	16	23	11	48	1.78
1190201--1190628	49	8.7	49	74	18	381	23	25	19	32	1.98
1190188--1190463	92	3.0	91	92	2	453	25	24	18	31	1.98
1190537--1190625	43	2.1	43	86	0	124	24	25	17	31	1.97
1190329--1190619	159	1.8	155	80	11	347	25	24	18	32	1.97
1193699--1193823	52	2.4	52	89	2	189	28	18	18	35	1.94
1193699--1193847	52	2.9	51	78	9	133	30	18	18	33	1.94
1193836--1193860	13	1.9	13	100	0	50	44	16	8	32	1.76
1193905--1193956	13	3.5	13	73	26	50	34	19	13	32	1.90
1194752--1195460	49	15.0	49	78	10	742	31	18	25	24	1.97
1194955--1195461	43	11.1	43	77	13	496	30	18	25	25	1.98
1194704--1195461	92	8.0	92	90	3	1018	31	18	25	24	1.97
1195323--1195390	21	3.2	21	63	19	50	29	16	27	26	1.97
1195466--1195679	32	6.6	33	86	3	265	18	18	33	28	1.95
1195466--1195694	65	3.5	65	82	4	284	19	17	33	30	1.95
1195462--1195694	97	2.4	96	89	2	351	20	17	33	29	1.95
1195720--1196022	33	9.6	33	71	18	173	32	12	32	22	1.92
1195753--1195902	28	5.0	27	71	22	102	31	11	34	22	1.90
1195780--1196245	31	14.7	34	73	14	170	33	13	30	23	1.93
1195720--1195840	62	2.0	60	86	3	170	31	13	33	22	1.92
1195730--1195992	96	2.8	96	88	5	392	32	11	33	22	1.90
1195951--1196252	31	9.8	31	82	8	341	32	14	29	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204441--1204569	52	2.5	52	90	0	222	27	17	18	37	1.93
1204578--1204602	13	1.9	13	100	0	50	36	16	16	32	1.90
1204649--1204731	32	2.6	32	84	0	112	39	14	9	36	1.79
1205021--1205274	49	5.0	49	79	10	305	24	24	17	33	1.96
1205021--1205274	101	2.5	102	92	1	447	24	24	17	33	1.96
1211570--1211623	20	2.7	20	88	5	74	33	16	12	37	1.87
1211652--1211702	19	2.6	20	90	3	77	33	17	15	33	1.92
1214215--1214254	13	3.1	13	92	0	71	42	15	12	30	1.83
1214283--1214321	20	1.9	21	94	5	71	30	17	15	35	1.91
1220439--1220468	13	2.3	13	100	0	60	36	13	16	33	1.88
1220419--1220485	33	2.1	32	86	8	91	35	14	13	35	1.86
1220514--1220564	19	2.6	20	90	3	77	33	17	15	33	1.92
1222447--1222513	32	2.1	32	85	2	89	31	14	11	41	1.83
1232253--1232381	57	2.2	58	80	4	145	46	17	10	25	1.80
1232281--1232547	58	4.6	59	73	10	180	49	16	8	26	1.74
1232495--1232655	57	2.8	57	80	7	191	52	13	9	24	1.71
1232542--1232624	19	4.3	20	70	20	68	55	9	12	22	1.65
1232576--1232610	18	2.0	17	88	5	52	51	11	11	25	1.71
1232454--1232655	58	3.5	57	78	6	212	51	13	8	25	1.70
1234925--1234988	33	1.9	33	87	0	92	35	14	14	35	1.86
1241074--1241131	20	3.0	20	89	2	91	39	13	10	36	1.79
1243680--1243722	10	4.0	10	83	16	59	48	11	0	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243682--1243727	23	2.0	23	100	0	92	47	13	0	39	1.42
1243692--1243727	10	3.0	13	76	23	51	47	13	0	38	1.44
1250116--1250166	19	2.6	20	81	12	61	43	1	3	50	1.31
1250166--1250205	19	2.1	19	86	9	55	70	2	2	25	1.13
1251935--1251968	16	2.1	16	88	0	50	35	5	5	52	1.50
1252939--1253007	2	34.0	2	75	8	59	42	5	4	47	1.47
1252944--1253018	35	2.1	37	82	9	93	38	8	5	48	1.56
1255730--1255755	3	8.7	3	100	0	52	69	0	0	30	0.89
1257613--1257649	19	1.9	19	94	0	65	32	16	18	32	1.93
1260672--1260751	41	2.0	41	100	0	160	25	17	12	45	1.83
1264502--1264532	13	2.4	13	100	0	62	38	12	16	32	1.86
1264576--1264627	19	2.7	19	85	11	70	32	19	13	34	1.90
1264599--1264660	32	1.9	32	86	3	88	35	14	16	33	1.89
1264651--1264689	20	1.9	21	89	5	62	28	12	23	35	1.91
1267136--1267160	13	1.9	13	100	0	50	32	16	16	36	1.90
1269789--1269861	20	3.6	20	79	3	92	35	12	19	32	1.89
1269807--1269882	21	3.7	21	80	3	100	42	11	17	28	1.84
1269789--1269882	41	2.3	41	96	0	170	39	11	18	30	1.86
1269921--1269946	13	2.0	13	100	0	52	38	15	15	30	1.88
1276119--1276157	13	3.0	13	92	0	60	28	17	15	38	1.91
1278600--1278672	20	3.6	20	81	3	101	35	13	19	31	1.91
1278618--1278693	21	3.7	21	80	3	100	42	11	17	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278600--1278693	41	2.3	41	98	0	179	39	12	18	29	1.88
1278732--1278757	13	2.0	13	100	0	52	38	15	15	30	1.88
1282272--1282297	13	2.0	13	100	0	52	30	15	15	38	1.88
1282995--1283038	21	2.1	21	83	8	54	25	31	4	38	1.76
1284841--1284879	13	3.0	13	100	0	78	38	15	15	30	1.88
1286958--1286988	15	2.1	15	93	0	53	12	22	16	48	1.80
1288790--1288834	21	2.1	21	84	8	56	22	20	4	53	1.63
1291054--1291079	13	2.0	13	100	0	52	30	15	15	38	1.88
1293309--1293360	20	2.7	19	82	11	61	32	15	13	38	1.86
1293332--1293393	32	1.9	32	86	3	88	37	11	16	35	1.84
1298853--1299023	51	3.3	51	79	4	198	32	11	26	29	1.92
1299006--1299081	27	2.8	28	88	6	102	21	21	34	23	1.97
1301552--1301577	13	2.0	13	100	0	52	38	15	15	30	1.88
1301531--1301597	33	2.0	33	88	0	98	43	16	14	25	1.86
1301617--1301684	19	3.9	18	76	23	83	38	14	11	35	1.83
1301639--1301663	13	1.9	13	100	0	50	32	16	16	36	1.90
1301620--1301682	32	2.0	32	96	0	117	36	15	12	34	1.86
1301740--1301796	21	2.7	21	97	0	105	36	19	10	33	1.86
1302415--1302982	55	10.3	55	92	3	864	20	20	29	28	1.98
1303963--1304015	1	53.0	1	76	0	52	0	5	5	88	0.62
1303963--1304015	27	2.0	27	88	3	81	0	5	5	88	0.62
1312059--1312084	1	26.0	1	100	0	52	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1316502--1316672	51	3.3	51	79	4	198	32	11	26	29	1.92
1316655--1316730	27	2.8	28	88	6	102	21	21	34	23	1.97
1319199--1319224	13	2.0	13	100	0	52	38	15	15	30	1.88
1319178--1319244	33	2.0	33	88	0	98	43	16	14	25	1.86
1319264--1319331	19	3.9	18	76	23	83	38	14	11	35	1.83
1319286--1319310	13	1.9	13	100	0	50	32	16	16	36	1.90
1319267--1319329	32	2.0	32	96	0	117	36	15	12	34	1.86
1319387--1319443	21	2.7	21	97	0	105	36	19	10	33	1.86
1322684--1322713	15	2.0	15	93	0	51	26	3	0	70	1.03
1323275--1323328	21	2.6	22	80	11	69	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17