genome.fa.s14.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  12  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918147--1918174	13	2.2	13	100	0	56	46	0	0	53	1.00
1920857--1920908	9	5.7	9	79	2	50	1	19	0	78	0.84
1920858--1920907	18	2.8	18	80	14	59	2	20	0	78	0.86
1921927--1921958	10	3.1	11	91	8	50	0	15	0	84	0.63
1924012--1924050	20	1.9	21	89	5	62	64	2	0	33	1.08
1924347--1924373	2	13.5	2	100	0	54	51	0	0	48	1.00
1924998--1925031	3	11.3	3	100	0	68	0	35	0	64	0.94
1931422--1931468	24	2.0	24	82	0	58	51	0	4	44	1.21
1931843--1931891	19	2.7	18	84	6	62	48	2	0	48	1.12
1932804--1932841	17	2.2	18	86	9	53	26	2	0	71	1.00
1933864--1933916	15	3.6	15	76	5	63	62	0	0	37	0.96
1933861--1933920	31	1.9	31	86	10	86	60	0	0	40	0.97
1934001--1934104	23	4.5	24	69	19	71	51	0	1	45	1.18
1934032--1934075	18	2.4	18	88	7	63	50	2	0	47	1.13
1934093--1934133	6	7.2	6	83	10	50	78	0	0	21	0.76
1933991--1934121	68	1.9	68	80	11	153	54	0	1	43	1.15
1934590--1934637	22	2.3	20	82	7	51	68	0	0	31	0.90
1934675--1934720	23	2.0	23	91	0	74	60	0	0	39	0.97
1934834--1934901	32	2.0	32	86	8	91	60	0	1	38	1.06
1935306--1935427	20	6.1	20	67	19	58	57	1	0	40	1.08
1936663--1936688	7	3.7	7	100	0	52	23	0	0	76	0.78
1936694--1936728	18	1.9	18	88	11	54	42	2	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938992--1939139	73	2.0	73	94	0	260	41	11	19	27	1.86
1941552--1941598	17	2.8	17	80	0	58	46	0	6	46	1.28
1951867--1951905	20	2.0	20	94	0	69	35	12	5	46	1.65
1957312--1957536	60	3.8	60	80	5	231	19	16	19	44	1.86
1957438--1957663	59	3.8	59	78	6	181	19	15	18	46	1.84
1957689--1957800	59	1.9	57	85	3	152	15	15	17	51	1.76
1957689--1957824	57	2.3	58	83	5	159	14	15	19	50	1.79
1959034--1959071	14	2.8	14	81	18	53	31	7	0	60	1.25
1961928--1962024	31	3.0	32	72	10	90	23	20	14	41	1.89
1962490--1962554	33	2.0	33	90	0	103	35	15	13	35	1.87
1966419--1966444	13	2.0	13	100	0	52	38	15	15	30	1.88
1966401--1966464	32	2.0	33	87	3	94	40	17	14	28	1.88
1966499--1966536	20	1.9	20	94	0	67	44	10	10	34	1.73
1968663--1968707	21	2.1	21	84	8	56	53	4	20	22	1.63
1975183--1975208	13	2.0	13	100	0	52	38	15	15	30	1.88
1980966--1981092	52	2.4	52	92	0	218	27	16	18	37	1.92
1981103--1981127	13	1.9	13	100	0	50	36	16	16	32	1.90
1981172--1981223	13	3.5	13	73	26	50	34	19	13	32	1.90
1981974--1982349	49	7.9	48	74	12	283	30	18	26	24	1.98
1982077--1982340	43	5.7	44	80	9	280	29	18	26	24	1.98
1982025--1982339	92	3.3	91	87	5	425	30	18	26	24	1.98
1982351--1982405	28	2.0	28	85	0	74	20	21	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982421--1982517	35	2.9	34	84	7	126	38	12	29	19	1.88
1982403--1982517	35	3.4	33	83	7	124	37	13	29	20	1.90
1982551--1982637	32	2.6	34	83	3	106	36	12	31	19	1.89
1982563--1982641	34	2.4	32	85	4	104	34	12	31	21	1.91
1982620--1982705	28	3.0	28	78	9	111	19	16	32	31	1.94
1982614--1982699	29	3.0	29	79	8	113	23	16	30	30	1.96
1984123--1984158	16	2.3	16	95	4	65	0	0	16	83	0.65
1984125--1984181	18	3.1	18	89	5	78	0	5	12	82	0.82
1984132--1984179	16	2.8	17	81	9	62	0	4	10	85	0.73
1984123--1984192	21	3.5	20	84	7	72	0	5	11	82	0.82
1993651--1993728	21	3.7	21	89	3	95	39	11	14	34	1.82
1993786--1993848	19	3.7	18	76	24	73	33	12	17	36	1.88
1993805--1993829	13	1.9	13	100	0	50	36	16	16	32	1.90
1993784--1993856	32	2.3	32	97	0	137	34	12	17	35	1.88
1993873--1993915	21	2.0	21	100	0	86	44	9	18	27	1.80
1996286--1996524	52	4.6	51	83	5	266	30	25	10	34	1.88
1996509--1996580	27	2.6	29	84	10	105	25	33	20	20	1.97
1996533--1996821	79	3.6	79	88	3	402	25	28	16	30	1.97
1996533--1996850	160	2.0	158	83	9	396	26	27	15	31	1.95
1996539--1996841	159	1.9	156	83	9	373	26	28	15	30	1.96
2009155--2009237	6	14.5	6	80	14	104	84	12	3	0	0.75
2009155--2009237	11	7.3	11	86	9	96	84	12	3	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2009152--2009258	28	3.8	27	75	17	85	83	9	7	0	0.82
2009162--2009258	30	3.4	28	81	12	99	82	9	8	0	0.84
2009152--2009243	1	92.0	1	71	0	58	84	10	4	0	0.75
2010314--2010564	55	4.5	55	86	7	360	25	29	20	24	1.99
2010314--2010563	116	2.2	113	84	9	350	26	28	20	24	1.99
2010483--2010656	94	1.9	94	88	1	269	28	29	17	24	1.97
2010817--2010980	42	3.8	43	73	18	144	22	26	11	39	1.88
2011778--2011827	19	2.6	19	93	0	82	32	12	16	40	1.84
2011852--2011893	21	2.0	21	95	0	75	45	9	16	28	1.79
2014271--2014510	52	4.6	51	88	3	320	29	25	10	34	1.90
2014489--2014776	79	3.6	77	85	7	339	26	28	15	30	1.96
2014440--2014776	160	2.1	159	84	7	425	27	27	14	31	1.95
2014440--2014806	79	4.6	79	80	8	327	28	26	13	31	1.94
2020359--2020435	32	2.4	32	100	0	154	28	15	20	35	1.94
2020326--2020486	84	1.9	84	96	0	295	28	17	19	34	1.94
2020474--2020532	13	5.0	13	73	23	67	38	15	16	28	1.89
2020604--2020628	13	1.9	13	100	0	50	32	16	16	36	1.90
2023349--2023709	131	2.7	130	75	9	356	18	24	15	41	1.89
2023260--2023654	197	2.0	197	81	5	458	16	22	16	43	1.87
2023234--2023637	66	6.1	64	75	10	300	17	22	16	43	1.87
2028273--2028336	32	2.0	32	87	0	92	37	18	1	42	1.60
2030738--2030879	73	1.9	73	95	0	257	41	11	19	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032342--2032368	12	2.2	12	100	0	54	22	14	37	25	1.93
2035526--2035561	18	2.0	18	94	0	63	27	2	38	30	1.71
2035831--2035858	6	4.7	6	100	0	56	46	0	0	53	1.00
2038903--2039971	581	1.8	583	84	1	1471	27	17	15	39	1.90
2040231--2040286	21	2.7	21	97	0	103	35	12	14	37	1.84
2040345--2040407	19	3.6	19	72	24	66	34	9	19	36	1.84
2040345--2040420	32	2.4	32	93	0	125	34	11	18	35	1.87
2040437--2040491	20	2.8	20	97	0	101	36	16	10	36	1.84
2046836--2047517	227	3.0	228	96	1	1262	28	9	13	48	1.74
2049962--2049987	13	2.0	13	100	0	52	38	15	15	30	1.88
2050090--2050511	43	8.8	47	81	11	418	25	24	17	32	1.97
2050087--2050465	92	4.1	92	94	1	632	25	24	17	32	1.97
2050366--2050542	55	3.3	55	88	2	243	24	24	14	36	1.93
2051381--2051438	20	3.0	20	84	2	73	29	10	13	46	1.77
2051477--2051504	13	2.2	13	100	0	56	28	21	17	32	1.96
2060082--2060107	13	2.0	13	100	0	52	38	15	15	30	1.88
2060064--2060127	32	2.0	33	90	3	103	42	15	14	28	1.86
2060565--2060631	37	1.9	35	88	11	102	32	11	25	29	1.92
2062294--2062345	20	2.9	17	83	11	68	38	11	13	36	1.81
2066327--2066382	21	2.7	21	94	0	94	46	10	14	28	1.78
2079105--2079144	2	20.0	2	84	0	53	50	7	0	42	1.30
2081775--2081813	9	4.2	9	87	6	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2081961--2082022	23	2.7	23	85	5	72	53	9	3	33	1.50
2081990--2082034	23	2.0	23	86	0	63	57	6	2	33	1.37
2082019--2082077	29	2.0	30	86	6	84	72	8	0	18	1.09
2082019--2082077	30	2.0	30	83	6	75	72	8	0	18	1.09
2082376--2082403	2	14.0	2	100	0	56	50	0	0	50	1.00
2082699--2082743	20	2.2	20	80	0	54	40	0	0	60	0.97
2082708--2082769	17	3.6	17	71	14	56	46	0	0	53	1.00
2082721--2082793	18	4.1	18	73	18	64	46	0	0	53	1.00
2082704--2082754	27	1.9	26	84	11	68	43	0	0	56	0.99
2084830--2084861	3	10.7	3	100	0	64	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17