genome.fa.s14.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559452--559503	25	2.1	25	86	13	72	21	0	3	75	0.97
560181--560224	6	7.3	6	82	7	54	20	0	2	77	0.88
560181--560225	17	2.5	18	92	7	74	22	0	2	75	0.91
560943--561028	42	2.1	42	95	2	156	31	17	15	36	1.91
560943--561008	22	3.1	22	73	18	77	28	19	15	36	1.92
560956--561030	20	3.7	20	76	15	82	32	14	17	36	1.90
561067--561120	20	2.7	20	97	0	99	37	11	14	37	1.82
563142--563183	16	2.6	16	79	20	52	54	2	23	19	1.55
565345--565388	21	2.1	21	83	8	54	25	31	4	38	1.76
567191--567216	13	2.0	13	100	0	52	38	15	15	30	1.88
569286--569316	15	2.1	15	93	0	53	12	22	16	48	1.80
571118--571162	21	2.1	21	84	8	56	22	20	4	53	1.63
573362--573413	19	2.7	20	84	6	70	28	13	17	40	1.87
573362--573419	19	3.0	18	80	12	62	25	12	20	41	1.87
576726--576778	20	2.7	20	100	0	106	26	15	15	43	1.85
576766--576790	13	1.9	13	100	0	50	32	16	16	36	1.90
576820--576858	10	3.9	10	93	0	69	28	28	2	41	1.69
580412--580466	28	2.0	28	96	0	101	34	7	1	56	1.38
581467--581675	69	3.0	69	90	1	330	26	23	21	28	1.99
582578--582617	2	20.0	2	100	0	80	50	0	0	50	1.00
587788--587828	18	2.3	18	80	15	50	60	0	0	39	0.96
587776--587871	45	2.0	49	88	9	146	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588088--588154	18	3.7	18	78	8	64	71	0	0	28	0.86
588098--588141	14	3.1	15	81	15	58	75	0	0	25	0.81
588099--588124	11	2.4	11	100	0	52	84	0	0	15	0.62
588967--588991	4	6.2	4	100	0	50	24	0	0	76	0.80
589783--589826	20	2.2	20	91	0	70	36	18	11	34	1.86
590066--590098	15	2.1	16	94	5	59	39	0	0	60	0.97
590845--590898	28	1.9	28	81	7	65	40	3	3	51	1.37
594466--594491	12	2.2	12	100	0	52	92	0	7	0	0.39
595104--595291	59	3.2	58	79	7	193	33	11	11	43	1.77
595104--595309	58	3.5	58	80	7	186	33	12	11	43	1.78
597828--597919	16	5.8	16	76	5	78	7	16	33	42	1.76
598118--598157	18	2.2	18	86	8	55	50	2	2	45	1.28
600914--600978	32	2.0	32	82	5	78	13	13	24	47	1.80
600931--600980	16	3.1	16	82	5	57	14	16	20	50	1.78
600954--600998	16	2.8	16	86	0	63	15	22	26	35	1.94
602000--602032	12	2.8	12	100	0	66	33	27	0	39	1.57
603377--603409	11	3.1	11	91	4	50	48	0	0	51	1.00
606686--606734	16	3.1	16	93	0	89	65	16	12	6	1.45
608775--608826	20	2.7	20	93	3	88	65	9	11	13	1.47
611234--611260	13	2.1	13	100	0	54	40	14	14	29	1.86
613612--613661	21	2.4	21	83	9	59	48	2	20	30	1.61
613619--613661	21	2.0	22	86	4	61	51	2	20	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618232--618256	3	8.3	3	100	0	50	32	36	0	32	1.58
619849--619900	21	2.6	19	82	17	61	32	17	15	34	1.91
619930--619986	19	2.9	20	84	5	71	38	15	10	35	1.82
622566--622621	19	2.9	19	86	2	76	35	19	10	33	1.87
623563--623597	17	2.1	17	100	0	70	28	5	17	48	1.69
627441--627482	19	2.2	20	87	12	61	59	28	4	7	1.44
628404--628465	16	3.9	16	81	10	74	46	3	0	50	1.17
635653--635701	24	2.0	24	100	0	98	40	0	20	38	1.53
635660--635711	24	2.2	24	82	0	59	51	1	13	32	1.52
647965--648029	2	32.5	2	100	0	130	49	0	0	50	1.00
657250--657274	13	1.9	13	100	0	50	56	28	8	8	1.57
659177--659243	33	2.0	33	88	0	98	34	11	13	40	1.81
659197--659221	13	1.9	13	100	0	50	36	16	16	32	1.90
659285--659309	13	1.9	13	100	0	50	32	16	16	36	1.90
659318--659438	52	2.3	52	95	0	215	34	18	19	28	1.95
666636--666693	15	3.9	15	77	6	55	84	6	8	0	0.78
666636--666686	18	2.7	18	84	6	57	86	5	7	0	0.71
666646--666691	18	2.7	18	83	6	60	84	6	8	0	0.77
667694--667804	31	3.7	31	89	9	176	27	28	18	25	1.98
667691--667804	59	1.9	60	92	5	196	26	28	18	27	1.98
667812--668511	34	20.9	34	79	13	715	20	33	12	32	1.91
667970--668021	27	1.9	27	96	0	95	23	38	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668000--668511	71	7.4	70	86	7	672	20	34	12	33	1.90
668515--668584	33	2.1	33	89	5	115	25	40	17	17	1.90
668582--669141	49	11.9	49	82	9	709	24	25	18	31	1.97
668683--669188	92	5.5	92	98	0	958	25	24	18	32	1.97
668581--669188	184	3.3	184	95	2	1036	24	25	18	31	1.97
669206--669363	52	3.0	53	78	7	185	24	23	14	37	1.92
669143--669541	174	2.3	174	97	0	753	24	24	13	37	1.92
669380--669536	52	2.9	53	78	7	183	23	24	15	36	1.93
670337--670403	33	2.0	33	88	0	98	34	11	13	40	1.81
670357--670381	13	1.9	13	100	0	50	36	16	16	32	1.90
670445--670469	13	1.9	13	100	0	50	32	16	16	36	1.90
670478--670598	52	2.3	52	95	0	215	34	18	19	28	1.95
677770--677807	17	2.2	17	90	0	58	47	2	2	47	1.30
679305--679368	33	2.0	32	87	3	92	28	10	21	39	1.87
679399--679451	20	2.6	21	76	8	56	32	16	13	37	1.88
679439--679463	13	1.9	13	100	0	50	36	16	16	32	1.90
680019--680061	20	2.0	22	91	8	72	37	27	0	34	1.57
681434--681485	20	2.4	21	84	12	70	3	26	50	19	1.65
682133--682158	8	3.2	8	100	0	52	61	23	0	15	1.33
688074--688100	13	2.1	13	100	0	54	40	14	14	29	1.86
688141--688193	20	2.6	21	76	8	56	32	16	13	37	1.88
688181--688205	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690344--690381	3	12.7	3	100	0	76	31	0	0	68	0.90
690467--690518	12	4.2	12	75	15	52	44	3	0	51	1.19
692754--692805	21	2.5	20	81	6	68	36	19	7	36	1.80
692766--692814	21	2.3	21	85	0	62	32	24	4	38	1.74
693898--693933	18	2.0	18	94	0	63	30	5	8	55	1.52
695862--695887	13	2.0	13	100	0	52	30	15	15	38	1.88
695842--695905	32	2.0	33	87	3	94	28	14	17	40	1.88
700544--700574	15	2.1	15	93	0	53	12	22	16	48	1.80
702376--702428	21	2.4	22	81	6	63	22	16	3	56	1.56
704618--704643	13	2.0	13	100	0	52	30	15	15	38	1.88
716404--716475	29	2.3	32	83	11	105	25	29	13	31	1.94
716584--717017	41	10.4	41	76	6	329	18	25	14	41	1.88
716584--716934	123	2.8	123	83	4	377	19	25	14	40	1.89
717161--717679	31	16.8	31	77	4	476	27	29	25	17	1.98
718231--718284	20	2.7	20	88	2	72	37	11	18	33	1.86
718350--718389	20	2.0	20	85	5	53	35	12	15	37	1.85
721948--722003	20	2.8	20	81	5	69	41	0	3	55	1.17
725123--725322	78	2.6	77	81	6	206	30	16	28	24	1.96
725280--725349	28	2.5	28	84	11	90	24	17	34	24	1.96
725337--725558	52	4.3	51	79	2	219	31	11	25	31	1.91
725528--725586	28	2.0	31	87	9	88	27	15	30	27	1.96
725491--725640	82	1.9	82	84	4	207	29	12	28	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725439--725691	133	1.9	131	82	4	312	32	12	26	29	1.92
725580--725706	51	2.4	51	78	3	146	33	11	24	30	1.90
728336--728488	80	1.9	80	93	0	261	21	13	18	47	1.82
728585--728635	19	2.7	19	93	0	93	35	11	19	33	1.88
728687--728712	13	2.0	13	100	0	52	30	15	15	38	1.88
731074--731196	51	2.4	52	83	5	151	31	23	11	33	1.90
731180--731254	27	2.7	28	85	6	100	26	33	17	22	1.96
731207--731372	79	2.1	79	84	4	210	25	24	16	33	1.96
731374--731540	51	3.3	48	82	12	192	31	25	10	31	1.90
731528--731604	28	2.8	27	84	9	93	24	31	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17