genome.fa.s14.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  6  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978740--978789	20	2.5	20	87	6	66	40	20	12	28	1.87
978817--978853	19	1.9	19	100	0	74	35	16	16	32	1.91
978838--978864	13	2.1	13	100	0	54	40	14	14	29	1.86
978819--978881	32	1.9	33	90	3	101	39	14	15	30	1.87
982785--982818	13	2.6	13	90	0	50	23	47	2	26	1.66
984397--984421	12	2.1	12	100	0	50	28	32	0	40	1.57
984978--985013	19	1.9	18	88	5	54	75	2	0	22	0.94
986295--986336	15	2.8	16	89	7	61	14	0	7	78	0.95
991665--991708	22	2.0	22	95	0	79	38	13	15	31	1.87
995534--995610	38	2.1	37	85	7	102	42	1	1	54	1.16
995907--995954	10	4.7	10	79	5	51	39	0	2	58	1.10
995976--996022	24	2.0	24	84	12	62	17	8	14	59	1.59
996309--996577	148	1.8	148	82	4	346	41	17	12	29	1.85
1000431--1000509	34	2.3	34	89	4	115	29	29	5	36	1.79
1000909--1000964	20	2.8	20	91	0	94	44	10	12	32	1.77
1001087--1001137	19	2.6	19	84	3	66	35	15	15	33	1.90
1003064--1003106	21	2.0	21	90	0	68	55	27	2	13	1.51
1003983--1004034	22	2.3	22	78	18	54	17	19	3	59	1.52
1005630--1005728	34	2.9	34	80	4	110	31	23	8	37	1.84
1009977--1010105	52	2.5	52	91	5	224	27	17	17	37	1.92
1010176--1010244	32	2.1	33	94	2	122	36	17	11	34	1.86
1010200--1010224	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012853--1012886	6	5.7	6	96	0	59	0	20	0	79	0.73
1012850--1012893	18	2.4	18	80	0	61	0	27	0	72	0.85
1014273--1014311	15	2.6	15	83	0	51	64	5	0	30	1.15
1015066--1015128	23	2.9	22	70	11	58	36	0	4	58	1.19
1015899--1015958	18	3.4	18	78	17	63	6	16	0	76	0.99
1015910--1015954	9	4.8	10	86	13	69	6	17	0	75	1.01
1015896--1015969	35	2.1	34	80	11	80	8	17	0	74	1.05
1018479--1018513	18	1.9	18	88	0	52	34	11	2	51	1.53
1020074--1020099	13	2.0	13	100	0	52	38	15	15	30	1.88
1020052--1020119	33	2.1	32	88	2	100	33	14	14	36	1.87
1020152--1020203	20	2.5	20	81	3	59	28	15	15	40	1.88
1020191--1020219	13	2.2	13	100	0	58	37	13	17	31	1.89
1020205--1020255	20	2.5	20	83	0	57	33	13	15	37	1.87
1022240--1022284	20	2.1	22	88	8	67	4	28	48	17	1.66
1022724--1022761	13	2.9	13	96	0	67	34	18	15	31	1.92
1028874--1028941	33	2.1	32	88	2	100	33	11	16	38	1.85
1030852--1030897	21	2.1	21	84	8	56	52	10	2	34	1.49
1030962--1031012	6	8.8	6	87	8	79	64	1	0	33	1.05
1030966--1030999	16	2.1	16	94	0	59	64	2	0	32	1.08
1030962--1031005	22	2.0	22	95	0	79	63	2	0	34	1.07
1035787--1035811	13	1.9	13	100	0	50	40	16	8	36	1.77
1037494--1037534	15	2.7	15	84	0	55	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037471--1037535	22	2.9	22	74	14	53	1	27	0	70	0.96
1037480--1037558	30	2.6	28	79	18	79	2	26	0	70	0.99
1038823--1038895	20	3.6	20	81	3	101	35	13	19	31	1.91
1038841--1038916	21	3.7	21	80	3	100	42	11	17	28	1.84
1038823--1038916	41	2.3	41	98	0	179	39	12	18	29	1.88
1042991--1043021	15	2.1	15	93	0	53	48	16	22	12	1.80
1046699--1046771	20	3.6	20	81	3	101	35	13	19	31	1.91
1046717--1046792	21	3.7	21	80	3	100	42	11	17	28	1.84
1046699--1046792	41	2.3	41	98	0	179	39	12	18	29	1.88
1048020--1048046	2	13.5	2	100	0	54	51	0	0	48	1.00
1047968--1050536	842	3.0	842	96	2	4629	39	14	13	32	1.84
1049715--1049757	2	21.5	2	95	0	77	48	0	0	51	1.00
1059268--1059317	2	25.0	2	76	15	50	50	0	4	46	1.20
1059268--1059317	25	1.9	25	92	8	82	50	0	4	46	1.20
1059425--1059472	14	3.6	13	76	13	53	45	0	2	52	1.12
1059395--1059483	47	1.9	46	81	6	108	38	3	2	56	1.29
1065352--1065452	27	3.7	27	84	2	114	30	14	27	26	1.95
1066529--1066620	27	3.4	27	85	8	116	32	11	27	28	1.92
1069411--1069465	20	2.7	20	83	8	67	29	16	10	43	1.82
1073183--1073376	65	3.0	65	85	4	286	41	10	13	34	1.79
1077324--1077353	14	2.1	14	93	0	51	60	0	3	36	1.14
1079269--1079305	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079354--1079387	16	2.0	18	88	11	54	70	5	0	23	1.09
1079711--1079750	2	20.0	2	100	0	80	50	0	0	50	1.00
1084769--1084802	12	2.7	13	81	9	52	55	0	5	38	1.24
1084922--1084962	21	2.0	21	85	4	57	53	2	0	43	1.13
1085100--1085142	22	2.2	19	84	16	52	53	0	0	46	1.00
1085426--1085478	17	2.9	18	80	11	54	52	5	0	41	1.25
1087019--1087168	52	2.9	50	86	5	201	34	16	17	32	1.92
1089286--1089359	27	2.7	27	95	0	130	21	43	18	16	1.88
1093706--1093765	29	2.1	29	96	0	111	40	13	21	25	1.89
1093709--1093786	29	2.7	29	86	7	88	47	11	17	23	1.80
1099916--1099956	21	2.0	20	90	4	64	51	17	12	19	1.76
1100898--1100952	21	2.7	21	86	8	69	47	10	12	29	1.76
1100898--1100972	20	3.7	20	80	3	78	42	12	12	33	1.79
1102256--1102319	33	2.0	32	87	3	92	25	15	17	42	1.88
1103975--1104003	3	9.7	3	100	0	58	34	0	34	31	1.58
1104190--1104240	21	2.4	21	86	0	75	58	5	17	17	1.57
1111662--1111734	34	2.1	35	85	7	96	54	12	16	16	1.70
1114687--1114743	20	2.8	19	82	15	62	42	21	12	24	1.87
1120885--1121059	82	2.1	81	94	1	305	30	14	21	34	1.93
1123935--1124356	209	2.0	210	81	4	487	36	14	14	33	1.88
1125082--1125106	13	1.9	13	100	0	50	36	16	16	32	1.90
1127324--1127368	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129172--1129202	15	2.1	15	93	0	53	48	16	22	12	1.80
1131216--1131295	20	3.8	20	75	15	79	26	15	15	43	1.85
1131281--1131319	13	3.0	13	96	0	69	30	17	15	35	1.91
1133846--1133870	13	1.9	13	100	0	50	36	16	16	32	1.90
1134858--1134887	14	2.1	14	93	0	51	43	16	0	40	1.48
1134862--1134929	2	34.0	2	78	0	73	47	8	1	42	1.43
1139447--1139492	18	2.6	18	89	0	65	80	0	2	17	0.81
1139447--1139493	23	2.0	23	83	4	58	78	0	2	19	0.85
1139913--1140060	73	2.0	73	90	0	233	47	20	21	10	1.79
1140291--1140332	21	2.1	21	82	8	52	71	4	19	4	1.22
1140676--1140732	22	2.5	23	88	5	89	56	24	17	1	1.51
1143032--1143238	105	2.0	105	94	0	360	27	14	8	50	1.70
1145350--1145512	85	1.9	84	85	6	222	38	11	14	35	1.82
1152847--1152872	2	13.0	2	100	0	52	50	0	0	50	1.00
1153129--1153321	58	3.4	57	77	6	201	48	16	10	24	1.77
1153358--1153568	58	3.7	58	77	6	180	48	11	12	27	1.76
1155275--1155450	64	2.7	64	80	3	185	39	13	13	34	1.83
1155344--1155532	61	3.0	60	72	4	153	38	10	14	36	1.80
1155344--1155598	127	2.0	126	81	2	296	39	10	14	35	1.80
1156483--1156577	34	2.8	34	85	7	113	34	10	23	31	1.89
1157244--1157293	19	2.6	19	93	0	82	34	12	18	36	1.87
1157346--1157370	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159303--1159378	21	3.7	21	80	3	100	28	17	11	42	1.84
1159323--1159396	20	3.7	20	81	3	103	31	20	13	35	1.91
1159303--1159396	41	2.3	41	98	0	179	29	18	12	39	1.88
1161852--1161890	13	3.0	13	96	0	69	35	15	17	30	1.91
1161876--1161954	20	3.7	20	78	15	77	44	15	15	25	1.85
1165795--1165839	21	2.1	21	84	8	56	22	20	4	53	1.63
1166291--1166363	20	3.6	20	81	3	101	35	13	19	31	1.91
1166291--1166385	41	2.3	42	96	1	174	40	12	17	29	1.87
1166424--1166449	13	2.0	13	100	0	52	38	15	15	30	1.88
1170370--1170400	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17