genome.fa.s14.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  9  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1493881--1493930	2	25.0	2	95	0	91	48	0	2	50	1.12
1494864--1494888	13	1.9	13	100	0	50	48	0	8	44	1.32
1497632--1497683	25	2.0	25	85	10	70	76	1	11	9	1.09
1497650--1497693	17	2.5	18	81	3	54	77	0	6	15	0.97
1500189--1500224	18	2.0	18	94	0	63	47	5	0	47	1.25
1500393--1500471	16	4.8	16	76	3	68	59	11	3	25	1.48
1500411--1500495	32	2.7	31	80	5	91	62	10	2	24	1.39
1500415--1500495	16	5.1	16	72	1	65	61	11	2	24	1.41
1501209--1501276	19	3.9	19	76	21	76	36	11	13	38	1.81
1501230--1501254	13	1.9	13	100	0	50	36	16	16	32	1.90
1501211--1501273	32	2.0	32	93	0	108	36	12	14	36	1.84
1503780--1503851	28	2.6	28	88	2	101	26	31	20	20	1.98
1503834--1504056	52	4.3	53	81	5	204	30	24	12	33	1.92
1504044--1504143	28	3.6	28	80	10	107	24	33	18	25	1.97
1505856--1505901	20	2.3	20	88	0	65	10	50	4	34	1.57
1510279--1510349	27	2.6	28	88	6	101	22	5	25	46	1.73
1511797--1511847	21	2.3	23	80	12	63	62	3	13	19	1.46
1513051--1513097	20	2.2	21	88	7	69	65	0	0	34	0.93
1514526--1514576	18	2.8	18	77	11	59	37	1	0	60	1.08
1514731--1514769	11	3.5	11	85	0	51	33	0	0	66	0.92
1515277--1515328	17	3.2	17	76	10	56	46	1	0	51	1.12
1516604--1516637	14	2.4	14	85	0	50	61	11	0	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517545--1517654	52	2.1	55	83	8	138	57	3	1	37	1.27
1518880--1518931	21	2.5	22	84	6	72	44	0	0	55	0.99
1522607--1522640	17	2.0	17	100	0	68	41	11	29	17	1.85
1523922--1523967	20	2.2	20	85	11	58	58	4	0	36	1.18
1524603--1524706	48	2.1	48	87	1	145	49	9	4	36	1.57
1526164--1526205	20	2.0	21	86	4	59	61	11	4	21	1.48
1526164--1526206	21	2.0	21	82	8	52	62	11	4	20	1.46
1527732--1527771	19	2.0	20	85	4	55	35	7	2	55	1.42
1530760--1530833	38	2.0	38	83	2	96	24	14	22	37	1.92
1531049--1531087	18	2.2	18	86	13	55	30	7	5	56	1.49
1533392--1533439	8	6.2	8	79	15	57	79	0	2	18	0.84
1533395--1533439	15	2.9	16	90	6	74	80	0	2	17	0.82
1533392--1533454	15	4.5	14	76	13	58	76	1	1	20	0.96
1533634--1533730	13	7.2	13	72	21	67	19	20	14	45	1.85
1533948--1534001	24	2.4	22	82	14	58	72	5	18	3	1.20
1542083--1542717	52	12.9	49	76	13	511	32	16	25	25	1.96
1542083--1542275	109	1.8	104	84	7	262	33	17	24	24	1.96
1543488--1543513	13	2.0	13	100	0	52	30	15	15	38	1.88
1543552--1543627	20	3.8	20	79	8	73	28	15	14	40	1.87
1543903--1544139	50	4.7	50	81	9	164	33	14	24	27	1.94
1544009--1544139	52	2.5	52	87	1	183	33	15	24	26	1.95
1543964--1544195	103	2.3	102	79	6	245	34	15	26	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544227--1544282	27	2.1	27	89	0	85	30	14	33	21	1.93
1544230--1544359	59	2.2	59	84	0	170	36	13	26	23	1.92
1544250--1544723	32	15.0	32	74	14	360	35	12	31	21	1.90
1544250--1544722	59	7.5	64	77	13	358	35	12	30	21	1.90
1544375--1544492	27	4.2	27	75	14	96	32	13	33	21	1.92
1544370--1544526	58	2.6	59	86	8	196	34	12	33	19	1.90
1544228--1544744	151	3.3	153	77	11	458	34	12	30	21	1.91
1544315--1544655	186	1.8	186	84	5	468	35	12	30	21	1.91
1544727--1545104	30	11.7	34	72	15	263	31	15	29	23	1.95
1544727--1545104	63	5.8	65	75	12	307	31	15	29	23	1.95
1544802--1545066	95	2.8	93	83	6	302	32	14	29	24	1.94
1546300--1546349	22	2.3	22	79	6	57	8	6	4	82	0.96
1546307--1546371	23	2.8	23	84	6	78	4	4	9	81	0.97
1547830--1547873	21	2.1	21	83	8	54	25	31	4	38	1.76
1551782--1551812	15	2.1	15	93	0	53	12	22	16	48	1.80
1555886--1555911	13	2.0	13	100	0	52	30	15	15	38	1.88
1555950--1556025	20	3.8	20	79	8	73	28	15	14	40	1.87
1556301--1556537	50	4.7	50	81	9	164	33	14	24	27	1.94
1556407--1556537	52	2.5	52	87	1	183	33	15	24	26	1.95
1556362--1556593	103	2.3	102	79	6	245	34	15	26	24	1.94
1556628--1556751	59	2.1	59	84	0	167	37	14	26	21	1.92
1556648--1557121	32	15.0	32	74	14	360	35	12	30	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1556625--1556890	27	9.1	27	68	19	108	33	12	30	22	1.92
1556648--1557120	59	7.5	64	76	13	324	35	12	30	21	1.90
1556754--1557133	66	6.1	59	76	17	230	34	12	31	21	1.90
1556626--1557142	151	3.3	153	77	12	460	34	12	30	22	1.91
1557125--1557502	30	11.7	34	72	15	263	31	15	29	23	1.95
1557125--1557502	63	5.8	65	75	12	307	31	15	29	23	1.95
1557200--1557464	95	2.8	93	83	6	302	32	14	29	24	1.94
1558698--1558746	21	2.3	22	78	3	55	8	6	4	81	0.97
1558714--1558767	23	2.3	23	84	9	74	3	1	11	83	0.85
1560716--1560771	20	2.8	20	83	5	69	37	10	16	35	1.83
1562253--1562285	7	4.7	7	88	11	50	84	3	12	0	0.72
1564071--1564286	48	4.5	48	79	5	177	18	20	18	42	1.90
1564091--1564269	96	1.9	96	83	6	238	18	19	22	39	1.93
1564807--1564861	20	2.8	20	88	0	83	32	12	14	40	1.84
1571302--1571327	13	2.0	13	100	0	52	30	15	15	38	1.88
1572504--1572555	19	2.7	20	84	6	70	28	13	17	40	1.87
1572504--1572561	19	3.0	18	80	12	62	25	12	20	41	1.87
1573243--1573286	21	2.1	21	83	8	54	25	31	4	38	1.76
1575046--1575084	13	3.0	13	92	0	69	41	15	12	30	1.85
1577163--1577193	15	2.1	15	93	0	53	12	22	16	48	1.80
1578997--1579041	21	2.1	21	84	8	56	24	17	4	53	1.62
1581263--1581288	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581243--1581306	32	2.0	33	87	3	94	28	14	17	40	1.88
1583572--1583755	51	3.6	51	80	5	235	30	25	10	33	1.89
1583572--1583755	52	3.6	51	80	7	219	30	25	10	33	1.89
1583741--1583810	27	2.5	29	81	11	92	25	30	20	24	1.99
1583690--1583893	107	1.9	107	83	7	261	28	26	14	29	1.95
1583765--1583940	79	2.2	80	87	1	255	28	26	14	30	1.95
1583895--1583991	51	1.9	51	82	0	122	31	23	9	35	1.87
1584009--1584228	79	2.8	78	79	4	244	27	27	13	31	1.94
1583638--1584140	237	2.1	240	84	3	669	28	26	12	32	1.93
1595044--1595141	19	5.8	18	70	28	81	36	17	13	32	1.88
1595039--1595139	32	3.1	32	95	1	175	35	17	12	33	1.88
1595063--1595119	13	3.9	13	76	24	60	33	17	14	35	1.90
1595880--1596300	43	8.7	52	77	13	268	33	17	23	25	1.96
1595992--1596311	49	7.0	44	80	11	376	31	18	25	25	1.97
1595943--1596311	92	4.0	92	93	1	612	31	17	24	25	1.97
1596299--1596632	32	10.4	32	87	6	437	20	17	33	28	1.95
1596299--1596634	65	5.2	64	86	7	450	20	17	33	28	1.95
1596311--1596634	129	2.5	128	90	3	490	20	17	33	28	1.95
1596299--1596666	97	3.8	96	85	8	304	22	16	32	27	1.96
1596618--1597062	68	6.6	68	81	8	468	32	13	33	20	1.91
1596651--1597062	100	4.1	99	80	8	494	32	13	33	20	1.91
1596637--1597062	34	12.8	33	77	9	382	32	13	33	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1598016--1598045	11	2.7	11	94	0	51	0	0	13	86	0.57
1598365--1598402	16	2.5	15	87	8	58	0	0	10	89	0.49
1605299--1605427	52	2.5	52	97	0	240	29	17	17	34	1.94
1605299--1605447	52	2.9	51	91	4	228	30	17	18	33	1.94
1605497--1605564	32	2.1	32	94	0	118	36	19	10	33	1.85
1605502--1605585	19	4.7	19	77	18	99	36	19	10	33	1.86
1606145--1606209	21	3.6	19	73	26	70	44	15	12	27	1.82
1606163--1606188	13	2.0	13	100	0	52	38	15	15	30	1.88
1606145--1606209	34	2.0	33	93	6	114	44	15	12	27	1.82
1609665--1609695	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17