genome.fa.s14.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Length:  2879421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 2014 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376332--376372	15	2.7	15	84	3	55	17	19	17	46	1.85
380430--380480	20	2.6	20	87	9	70	27	13	17	41	1.87
382511--382549	20	1.9	20	84	5	51	10	28	43	17	1.82
385072--385112	15	2.7	15	84	3	55	17	19	17	46	1.85
389191--389215	13	1.9	13	100	0	50	36	16	16	32	1.90
389168--389235	33	2.1	33	89	8	104	32	14	16	36	1.89
391829--392243	105	3.9	104	73	9	306	36	9	22	31	1.85
392664--393397	378	1.9	375	82	4	904	39	14	16	28	1.89
408509--408562	20	2.7	20	85	2	72	33	14	11	40	1.82
411675--411892	108	2.0	108	88	1	321	39	12	17	29	1.87
417499--417597	35	2.8	34	80	10	101	42	17	16	24	1.88
418491--418530	19	2.2	19	86	4	55	57	5	0	37	1.21
419059--419110	25	2.0	26	85	3	70	34	7	7	50	1.60
420876--420939	32	2.0	32	84	6	85	37	12	18	31	1.88
422882--422920	17	2.4	16	83	8	51	48	5	2	43	1.38
422887--422920	17	2.1	17	88	5	52	52	2	2	41	1.31
423178--423296	59	2.0	59	96	0	220	53	14	14	17	1.72
425262--425305	6	7.0	6	85	10	52	0	2	11	86	0.66
425268--425309	14	3.1	14	83	13	61	0	4	9	85	0.72
425260--425305	20	2.4	20	85	7	69	0	2	10	86	0.64
441058--441085	2	14.0	2	100	0	56	50	0	50	0	1.00
445670--445794	57	2.2	57	83	7	148	51	12	7	29	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445829--445928	47	2.1	48	87	5	141	46	15	12	27	1.80
445871--445995	57	2.2	57	83	8	157	46	14	10	28	1.77
446036--446076	9	4.3	10	84	9	50	65	9	2	21	1.34
445998--446126	57	2.2	56	83	6	152	53	9	11	25	1.67
447766--447796	15	2.1	15	93	0	53	22	0	0	77	0.77
449590--449652	25	2.7	23	74	16	58	57	3	6	33	1.40
451897--451921	2	12.5	2	100	0	50	52	0	48	0	1.00
454450--454475	5	5.2	5	100	0	52	38	0	0	61	0.96
457185--457800	166	3.7	164	83	4	756	33	9	13	43	1.76
457185--457800	330	1.9	334	86	4	899	33	9	13	43	1.76
458037--459874	156	11.8	154	78	5	1575	26	14	18	40	1.88
458037--461403	311	10.9	309	76	7	2713	26	14	18	40	1.89
459926--461380	156	9.4	156	78	5	1271	26	14	19	40	1.90
465008--465050	17	2.5	17	88	3	68	74	2	16	6	1.14
465307--465530	113	2.0	111	83	6	283	33	18	13	35	1.90
466363--466392	13	2.3	13	100	0	60	36	13	16	33	1.88
466340--466407	33	2.1	33	88	0	100	33	19	13	33	1.90
475235--475264	13	2.3	13	100	0	60	36	13	16	33	1.88
476072--476124	20	2.7	20	96	0	97	28	20	5	45	1.74
476249--476395	44	3.4	44	73	12	133	25	20	10	42	1.84
476278--476682	88	4.6	87	77	5	332	23	18	12	45	1.83
476489--476616	44	2.9	44	74	12	127	22	17	9	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476161--476691	176	3.0	175	76	5	507	23	18	12	45	1.83
477103--477333	60	3.8	60	79	5	234	16	16	18	48	1.81
478152--478220	33	2.1	33	83	5	86	40	14	10	34	1.80
478177--478206	13	2.3	13	100	0	60	36	16	13	33	1.88
478249--478303	19	2.8	19	91	2	83	36	18	16	29	1.92
478273--478334	33	1.9	32	83	9	81	45	16	11	27	1.81
478919--478987	22	3.1	22	91	0	111	27	28	2	40	1.71
478857--479026	89	1.9	90	95	1	306	30	25	2	41	1.68
484764--484806	21	2.1	21	87	12	63	27	13	4	53	1.60
487319--487343	13	1.9	13	100	0	50	32	16	16	36	1.90
487372--487468	32	3.0	32	93	0	167	25	22	11	40	1.87
487456--487497	13	3.2	13	86	0	66	28	11	19	40	1.87
487956--488052	36	2.9	32	80	13	108	32	14	23	28	1.94
488778--489303	76	6.9	76	79	3	484	26	17	11	44	1.83
488778--489304	152	3.5	153	80	5	593	25	17	11	44	1.83
489973--490285	66	4.7	66	75	6	274	18	23	14	43	1.86
489973--490282	132	2.3	132	81	5	358	18	23	14	43	1.87
490564--490729	64	2.6	64	84	5	192	16	23	17	42	1.89
490618--490730	31	3.5	31	75	20	108	18	24	15	40	1.90
493318--493343	13	2.0	13	100	0	52	38	15	15	30	1.88
494365--494795	163	2.6	163	80	8	462	32	10	13	43	1.78
494297--494838	166	3.3	164	77	6	513	33	9	13	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494947--496071	156	7.2	155	76	10	784	28	13	17	39	1.88
495819--495852	17	2.0	17	94	0	59	26	11	26	35	1.91
495665--496007	173	2.0	172	81	6	408	27	13	18	40	1.87
496923--496986	32	2.0	33	87	3	94	32	15	14	37	1.87
497040--497100	20	3.0	20	85	0	77	37	11	16	34	1.85
499154--499231	20	3.8	20	76	6	66	39	14	8	37	1.77
500421--500467	21	2.2	21	100	0	94	46	12	14	25	1.80
502986--503057	23	3.2	23	84	2	83	26	2	20	50	1.62
503820--504077	128	2.0	128	96	0	480	56	11	6	24	1.59
503998--504107	29	3.8	29	83	7	118	61	10	7	20	1.51
508085--508193	29	3.8	28	84	6	121	62	14	6	16	1.51
508085--508193	57	1.9	57	81	7	132	62	14	6	16	1.51
509875--509973	43	2.3	43	100	0	198	29	14	22	34	1.93
509962--510017	20	2.8	19	76	7	67	28	21	10	39	1.87
516536--516591	19	2.9	19	89	2	76	35	14	17	32	1.90
516576--516602	13	2.1	13	100	0	54	40	14	14	29	1.86
518950--518987	13	2.9	13	92	0	58	39	15	13	31	1.86
520398--520434	16	2.3	16	85	0	56	32	8	2	56	1.43
523566--523592	13	2.1	13	100	0	54	29	14	14	40	1.86
523543--523611	32	2.2	33	84	10	90	30	15	13	40	1.86
523576--523632	19	2.9	19	84	2	78	33	15	15	35	1.90
523690--523779	19	5.0	19	77	16	102	28	16	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523661--523757	32	3.0	32	95	1	167	27	15	16	40	1.89
523543--523876	147	2.3	147	91	2	537	30	17	16	35	1.92
523677--523739	13	5.4	13	71	24	68	28	15	14	41	1.87
523824--523876	13	4.5	13	69	26	55	33	13	15	37	1.86
523811--523875	33	2.0	33	90	6	105	33	13	15	36	1.87
529956--529997	22	1.9	22	95	0	75	30	14	14	40	1.85
530978--531045	33	2.1	33	83	5	84	33	20	13	32	1.91
531001--531030	13	2.3	13	94	0	51	36	10	20	33	1.86
531471--531766	58	5.1	59	82	3	314	46	18	10	24	1.79
532646--532712	33	2.0	33	88	11	102	34	17	11	35	1.87
532674--532711	20	1.9	20	94	0	67	39	18	10	31	1.85
532666--532691	13	2.0	13	100	0	52	38	15	15	30	1.88
532741--532797	19	2.9	19	86	5	69	35	15	15	33	1.90
532763--532825	32	1.9	33	90	3	101	39	14	17	28	1.89
539157--539187	13	2.4	13	94	0	53	35	12	16	35	1.87
539137--539203	33	2.0	33	88	11	102	32	17	13	35	1.89
541083--541134	21	2.6	19	77	14	50	34	23	15	26	1.94
541804--541857	12	5.2	12	68	32	52	35	11	18	35	1.86
541803--541877	20	3.8	20	92	3	116	34	13	16	36	1.87
544476--544532	13	3.9	13	72	24	51	35	15	17	31	1.92
544475--544559	32	2.7	32	96	0	152	32	14	17	35	1.90
544489--544551	19	3.7	18	74	24	64	33	14	17	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553784--554276	165	3.0	165	99	0	959	42	19	11	26	1.85
556945--556987	18	2.5	18	81	7	54	58	0	0	41	0.98
556990--557043	21	2.6	21	73	8	56	51	0	3	44	1.19
558058--558096	16	2.4	16	86	0	51	38	0	2	58	1.12
558548--558616	29	2.5	27	79	13	70	47	0	0	52	1.00
558542--558612	26	2.6	27	80	10	74	47	0	0	52	1.00
558967--559032	31	2.1	32	85	2	89	42	0	1	56	1.08
558980--559027	16	3.1	16	74	14	55	43	0	0	56	0.99
558980--559043	30	2.1	30	86	13	87	42	1	0	56	1.09
559263--559304	18	2.3	18	84	8	50	28	2	0	69	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17