genome.fa.s23.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3125668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3007847--3007898	1	52.0	1	80	0	50	3	1	5	88	0.68
3007847--3007898	17	3.1	16	86	10	68	3	1	5	88	0.68
3007834--3007900	27	2.4	27	85	7	91	5	2	10	80	0.99
3012950--3013001	20	2.7	20	87	3	70	30	13	17	38	1.88
3013035--3013088	20	2.6	21	82	11	67	31	16	14	37	1.89
3013074--3013102	13	2.2	13	100	0	58	37	13	17	31	1.89
3013088--3013138	20	2.5	20	87	0	66	33	15	15	35	1.90
3023644--3024301	28	22.9	28	78	7	592	23	16	29	29	1.97
3023637--3024301	85	7.7	85	78	8	621	24	16	29	29	1.97
3023645--3024301	57	11.4	57	79	8	645	23	16	29	29	1.97
3024490--3024519	15	1.9	15	93	6	51	40	3	20	36	1.69
3026510--3026566	19	2.9	19	87	10	80	33	19	15	31	1.93
3028213--3028252	15	2.7	15	88	0	53	42	0	25	32	1.55
3029441--3029508	33	2.1	32	86	2	91	35	13	16	35	1.87
3029541--3029593	20	2.6	21	84	3	72	28	16	15	39	1.89
3029581--3029609	13	2.2	13	100	0	58	37	13	17	31	1.89
3029595--3029645	20	2.5	20	87	0	66	33	15	15	35	1.90
3031558--3031599	20	2.0	21	90	4	68	9	28	42	19	1.82
3032035--3032065	13	2.4	13	94	0	53	35	19	16	29	1.93
3038226--3038251	13	2.0	13	100	0	52	38	15	15	30	1.88
3038204--3038271	33	2.1	32	88	2	100	33	14	16	35	1.89
3038303--3038355	20	2.6	21	84	3	72	28	16	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3038343--3038371	13	2.2	13	100	0	58	37	13	17	31	1.89
3038357--3038407	20	2.5	20	87	0	66	33	15	15	35	1.90
3039049--3039073	13	1.9	13	100	0	50	32	16	16	36	1.90
3046323--3046371	21	2.4	22	80	13	59	63	0	8	28	1.23
3052617--3052682	19	3.8	19	77	22	90	33	12	18	36	1.88
3052618--3052680	32	2.0	32	100	0	126	33	12	19	34	1.89
3052637--3052661	13	1.9	13	100	0	50	36	16	16	32	1.90
3052724--3052748	13	1.9	13	100	0	50	32	16	16	36	1.90
3052757--3052887	52	2.5	52	92	0	217	34	18	18	29	1.94
3057619--3057649	4	7.8	4	92	0	53	22	3	0	74	0.96
3058421--3058524	15	7.3	14	72	12	70	56	6	1	34	1.37
3059891--3059921	14	2.2	14	100	0	62	25	19	0	54	1.44
3061399--3061442	3	14.7	3	95	0	79	29	0	2	68	1.02
3065207--3065274	28	2.2	32	75	10	72	38	4	2	54	1.36
3071412--3071466	19	2.8	19	78	8	65	30	16	12	40	1.86
3074631--3074768	51	2.7	51	81	6	145	44	13	13	29	1.81
3079009--3079073	23	3.0	22	91	6	105	30	26	0	43	1.55
3083553--3083593	21	2.0	21	85	9	57	19	21	0	58	1.39
3084559--3084690	51	2.6	50	83	4	156	28	16	14	40	1.88
3086532--3086556	10	2.5	10	100	0	50	16	8	8	68	1.38
3093812--3093850	15	2.6	15	91	0	60	28	41	12	17	1.87
3096295--3096348	20	2.7	20	88	5	74	37	20	12	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3096376--3096433	19	3.1	18	88	11	89	32	17	15	34	1.91
3096417--3096443	13	2.1	13	100	0	54	40	14	14	29	1.86
3097779--3097803	13	1.9	13	100	0	50	32	16	16	36	1.90
3097872--3097972	33	3.1	33	90	4	152	37	17	12	31	1.88
3105110--3105165	19	2.8	21	78	13	64	37	14	16	32	1.88
3105215--3105273	13	5.0	13	76	19	67	33	16	15	33	1.91
3105228--3105293	20	3.7	20	73	26	83	36	18	15	30	1.91
3105195--3105295	33	3.1	33	94	4	170	35	15	15	32	1.90
3106099--3106568	27	15.7	31	71	15	262	22	30	12	34	1.91
3106099--3106306	60	3.4	59	81	6	220	17	31	13	37	1.89
3106187--3106387	87	2.3	87	83	1	251	21	29	13	34	1.92
3106362--3106543	32	6.0	31	78	13	182	24	30	10	34	1.90
3106295--3106553	59	4.4	59	88	0	356	25	30	11	32	1.91
3106577--3106996	32	13.1	32	78	6	411	28	28	18	24	1.98
3107934--3108066	51	2.6	51	89	0	194	30	16	12	40	1.85
3110639--3110674	18	2.0	18	100	0	72	16	22	22	38	1.93
3112668--3112729	33	1.9	32	83	3	79	41	16	12	29	1.85
3113088--3113124	18	2.1	18	89	0	56	29	13	18	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!