genome.fa.s23.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3125668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474641--475279	49	13.5	50	72	15	357	25	26	18	30	1.98
474748--475194	87	4.9	87	87	4	545	25	26	19	29	1.98
474748--475195	173	2.5	178	85	7	566	25	26	18	29	1.98
475003--475242	101	2.4	101	85	0	327	24	24	18	32	1.97
475003--475371	52	7.3	49	72	7	240	23	25	17	33	1.96
475003--475334	101	3.3	100	77	6	296	24	25	17	33	1.97
479718--479742	13	1.9	13	100	0	50	36	16	16	32	1.90
479787--479870	13	5.5	13	71	28	60	35	17	13	33	1.89
479795--479857	19	3.7	18	76	24	73	36	17	12	33	1.88
479787--479872	32	2.7	32	96	0	163	37	17	12	32	1.88
481146--481810	102	6.6	102	82	8	727	34	17	24	23	1.96
481155--481810	49	12.9	52	80	11	679	34	18	24	23	1.96
481361--481498	43	3.1	43	77	15	161	31	18	25	24	1.97
481479--481640	52	2.9	59	78	15	182	32	20	25	20	1.97
481404--481805	109	3.9	106	82	9	462	33	18	23	23	1.97
481864--481977	34	3.4	34	83	6	133	37	13	29	19	1.89
482012--482077	32	2.1	32	88	5	98	39	13	28	18	1.89
482017--482100	32	2.6	32	80	1	78	32	15	30	21	1.94
482088--482161	29	2.6	29	85	6	98	17	13	33	35	1.89
484589--484645	13	3.9	13	76	24	60	35	14	17	33	1.90
484569--484666	32	3.0	32	96	1	178	34	12	17	35	1.87
484567--484664	19	5.8	18	71	28	90	33	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484727--484855	52	2.5	52	96	0	231	34	20	17	27	1.95
492027--492088	24	2.6	24	85	10	74	82	6	11	0	0.84
493046--493197	31	4.9	31	85	9	204	24	28	15	30	1.96
493206--493441	32	7.3	33	94	1	394	29	36	17	16	1.93
493206--493649	64	7.1	63	85	11	594	28	35	18	18	1.94
493443--493649	32	6.5	32	90	4	296	27	35	17	19	1.94
493295--493586	148	2.0	149	92	3	491	28	37	17	17	1.92
493265--493623	180	2.0	183	92	2	609	28	35	17	18	1.93
493642--493987	49	7.1	49	83	7	434	24	24	18	32	1.97
493786--493875	43	2.1	43	89	0	135	24	23	21	31	1.98
493829--493987	52	3.1	52	88	2	234	23	25	16	33	1.96
494781--494810	15	2.1	15	93	6	53	36	13	20	30	1.90
494776--494886	19	6.7	18	69	28	86	35	12	18	34	1.88
494811--494867	13	3.9	13	76	24	60	35	14	17	33	1.90
494776--494888	32	3.5	32	93	2	181	35	12	17	34	1.88
494929--494953	13	1.9	13	100	0	50	32	16	16	36	1.90
494962--495090	52	2.5	52	97	0	240	34	17	18	28	1.94
495642--495770	52	2.5	52	96	0	240	28	18	17	34	1.94
496576--497562	49	20.8	48	80	8	1014	31	17	25	25	1.97
496619--497562	199	5.0	189	87	4	1100	31	17	25	25	1.97
496828--497562	92	8.0	92	88	3	991	31	18	25	25	1.98
497594--498028	67	6.5	67	86	5	497	34	11	33	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497594--498028	34	12.9	34	84	5	510	34	11	33	20	1.89
497611--498028	133	3.1	132	87	4	545	34	11	33	19	1.88
497611--498017	167	2.4	166	90	2	627	34	11	34	19	1.88
502203--502331	52	2.5	52	93	0	222	27	18	17	36	1.93
502203--502351	52	2.9	51	87	4	176	29	18	17	34	1.94
503128--503166	20	2.0	20	100	0	78	35	15	10	38	1.81
503153--503178	13	2.0	13	100	0	52	38	15	7	38	1.76
503133--503196	33	1.9	33	90	0	101	34	15	9	40	1.80
508698--508765	20	3.3	20	76	13	66	39	10	14	35	1.80
508838--508884	20	2.3	21	77	3	51	31	14	12	40	1.84
517803--517843	21	2.0	21	85	9	57	31	2	24	41	1.68
518440--518477	20	1.9	20	94	0	67	34	21	7	36	1.82
519048--519745	31	22.7	31	74	4	570	19	25	28	27	1.98
519048--519745	124	5.7	124	81	2	710	19	25	28	27	1.98
519969--520021	27	2.0	26	89	10	81	33	15	24	26	1.95
520975--521026	20	2.6	20	93	0	86	36	17	13	32	1.89
523272--523313	21	2.0	22	85	4	59	52	0	21	26	1.47
523398--523433	13	2.8	13	86	0	54	41	19	11	27	1.85
524432--524496	19	3.8	18	73	24	68	33	12	15	38	1.85
524434--524504	32	2.2	32	94	0	124	33	12	16	36	1.87
524453--524477	13	1.9	13	100	0	50	36	16	16	32	1.90
524548--524573	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527032--527106	27	2.8	26	93	2	123	26	34	17	21	1.95
526982--527184	105	2.0	101	83	10	259	29	28	13	29	1.94
527170--527339	52	3.3	52	79	2	182	28	27	12	31	1.93
527352--527555	78	2.6	79	79	3	223	23	28	17	30	1.97
533691--535112	55	24.9	55	85	6	1461	26	28	20	24	1.99
533691--535112	116	12.4	115	87	5	1516	26	28	20	24	1.99
535876--535926	19	2.7	19	93	0	84	33	11	15	39	1.84
535978--536003	13	2.0	13	100	0	52	30	15	15	38	1.88
535958--536024	34	2.0	33	91	2	107	25	16	13	44	1.84
538371--538485	51	2.3	50	81	12	123	28	23	12	35	1.91
538472--538541	26	2.7	26	97	0	131	24	32	20	22	1.97
538610--538775	52	3.2	52	78	4	176	30	28	8	32	1.87
538788--539009	78	2.8	78	75	6	207	24	29	16	29	1.97
543734--543758	3	8.3	3	100	0	50	32	36	0	32	1.58
545754--545907	61	2.5	59	82	6	173	42	11	25	20	1.85
545753--545875	28	4.2	28	75	18	99	40	11	27	20	1.86
545741--545936	63	3.2	61	80	7	218	42	10	26	20	1.85
545885--546012	28	4.7	28	76	10	122	35	10	28	25	1.90
546014--546068	27	2.0	28	85	3	76	43	14	27	14	1.84
546117--546181	30	2.2	30	97	0	121	35	13	26	24	1.93
554724--554774	20	2.5	21	83	3	68	33	15	9	41	1.80
556382--556433	19	2.7	19	87	3	68	32	19	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559665--559717	20	2.7	20	96	0	97	35	16	18	28	1.93
559790--559872	19	4.7	19	81	17	115	37	18	12	32	1.87
559810--559834	13	1.9	13	100	0	50	32	16	16	36	1.90
559791--559853	32	2.0	32	96	0	117	36	17	12	33	1.88
563810--563874	32	2.0	32	84	3	85	32	16	13	36	1.89
563844--563896	19	2.7	20	88	2	81	32	18	13	35	1.90
563927--563990	33	1.9	32	84	12	85	34	12	20	32	1.90
564385--564434	23	2.2	23	96	0	91	28	8	22	42	1.81
570143--570216	20	3.7	19	83	7	85	37	10	16	35	1.83
571272--571839	28	19.9	29	80	9	550	25	17	29	27	1.98
571260--571839	84	6.8	84	80	6	617	25	17	28	28	1.97
571602--571673	38	1.9	37	88	2	108	27	13	31	26	1.94
571489--571840	150	2.4	148	84	5	432	25	17	28	28	1.97
578508--578574	37	1.9	35	88	11	102	29	25	11	32	1.92
579032--579057	13	2.0	13	100	0	52	30	15	15	38	1.88
579096--579171	21	3.7	21	82	3	109	28	18	11	40	1.86
579116--579189	20	3.7	20	81	3	103	31	20	13	35	1.91
579096--579189	41	2.3	41	100	0	188	29	19	12	38	1.89
580830--580854	13	1.9	13	100	0	50	32	16	16	36	1.90
581409--581455	23	2.0	24	84	12	62	61	19	4	14	1.49
584009--584075	37	1.9	35	88	11	102	29	25	11	32	1.92
584533--584558	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584597--584672	21	3.7	21	82	3	109	28	18	11	40	1.86
584617--584690	20	3.7	20	81	3	103	31	20	13	35	1.91
584597--584690	41	2.3	41	100	0	188	29	19	12	38	1.89
585494--585540	15	3.1	15	75	0	58	17	0	40	42	1.49
590151--590208	25	2.3	26	93	6	109	67	0	13	18	1.23
592727--592769	22	2.0	22	95	0	77	37	18	6	37	1.78
593545--593642	51	1.9	51	97	0	187	39	12	21	26	1.88
593585--593731	70	2.1	71	88	1	215	42	12	14	29	1.83
594658--594781	31	4.0	31	90	3	187	20	17	29	31	1.96
598641--598713	20	3.6	20	81	3	101	31	19	13	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18