genome.fa.s23.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3125668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905813--906358	76	7.1	74	70	16	258	36	15	26	21	1.93
905784--906362	271	2.1	269	83	5	729	37	15	25	21	1.93
905572--906336	153	5.0	148	76	14	466	36	15	26	21	1.93
906425--906490	30	2.2	29	83	2	87	36	13	28	21	1.91
906798--906822	13	1.9	13	100	0	50	28	16	16	40	1.89
906875--906926	19	2.7	20	87	3	70	36	13	19	30	1.90
907068--907144	39	2.0	39	94	0	136	32	20	10	36	1.87
909998--910042	21	2.1	21	84	8	56	53	4	20	22	1.63
913956--913992	13	2.8	13	95	0	65	29	10	16	43	1.82
916541--916566	13	2.0	13	100	0	52	38	15	15	30	1.88
918359--918397	20	2.0	19	95	5	69	35	23	10	30	1.88
918407--918431	13	1.9	13	100	0	50	32	16	16	36	1.90
918513--918575	19	3.6	19	70	24	66	39	19	15	25	1.91
918516--918608	32	2.9	32	87	4	125	40	20	12	25	1.88
928113--928138	8	3.2	8	100	0	52	15	0	23	61	1.33
928314--928351	13	2.9	13	88	0	58	31	13	18	36	1.89
930197--930228	16	2.0	16	93	0	55	40	6	15	37	1.73
930770--930810	20	2.0	20	90	0	64	39	21	7	31	1.81
932083--932107	12	2.1	12	100	0	50	44	0	24	32	1.54
933742--933819	36	2.2	36	97	0	147	25	26	16	30	1.97
938488--938536	24	2.0	25	88	4	73	42	2	22	32	1.65
939231--939284	19	2.8	20	85	2	74	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946478--946739	79	3.3	81	79	8	245	35	11	24	29	1.90
946679--946791	52	2.2	52	82	3	138	37	11	21	30	1.89
948647--948672	13	2.0	13	100	0	52	30	15	15	38	1.88
957406--957462	19	2.9	19	81	2	69	29	15	15	38	1.89
957491--957544	20	2.7	20	91	0	81	33	14	16	35	1.90
959193--959247	20	2.7	20	88	8	76	30	20	10	38	1.87
960358--960782	157	2.7	156	83	2	480	38	18	14	27	1.90
962834--962859	2	13.0	2	100	0	52	50	0	0	50	1.00
965407--965555	73	2.0	73	89	0	226	30	21	11	36	1.89
965492--965532	22	2.0	22	85	9	59	29	19	9	41	1.83
968492--968723	79	2.9	79	73	9	213	28	22	14	35	1.93
981123--981174	16	3.4	15	76	10	52	82	11	5	0	0.82
981121--981176	21	2.9	20	85	12	73	83	10	5	0	0.78
981121--981176	18	2.9	18	80	14	67	83	10	5	0	0.78
982249--982957	55	12.5	55	80	8	695	28	27	20	24	1.99
982269--982999	171	4.2	169	80	7	742	27	27	20	24	1.99
982249--982957	226	3.1	228	81	6	789	28	27	20	24	1.99
983089--983414	41	7.6	42	71	10	212	20	22	11	44	1.84
983089--983389	83	3.5	85	78	8	293	20	22	10	45	1.82
989284--989357	21	3.5	21	78	9	69	58	1	22	17	1.47
992453--992501	22	2.2	22	88	0	71	30	20	8	40	1.81
996580--996697	32	3.7	32	88	3	139	22	19	31	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996577--996677	31	3.2	31	87	2	148	20	18	31	28	1.97
996601--997229	28	21.5	28	78	9	432	24	17	28	29	1.97
996633--997229	57	10.3	57	77	11	459	24	16	28	30	1.97
997071--997144	38	2.0	37	83	2	94	31	13	25	29	1.94
1002689--1002810	41	3.0	40	70	13	104	42	15	22	18	1.88
1003173--1003283	48	2.3	49	85	3	154	42	15	18	24	1.88
1003194--1003563	46	8.0	45	70	9	153	42	16	19	21	1.89
1003214--1003538	140	2.3	136	83	5	382	43	16	19	20	1.89
1006146--1006591	52	8.5	51	75	7	342	32	11	26	29	1.91
1006348--1006424	28	2.8	28	85	0	91	22	19	35	23	1.96
1006038--1006585	262	2.1	263	93	1	940	31	11	27	29	1.92
1009133--1009169	13	2.8	14	84	8	51	18	0	0	81	0.70
1009904--1010435	55	9.3	55	81	9	527	24	21	27	26	1.99
1009904--1010658	165	4.5	166	75	15	592	26	21	27	25	1.99
1010247--1010627	211	1.8	211	92	1	647	26	21	26	25	1.99
1010458--1010658	55	3.4	56	82	13	212	27	20	25	26	1.99
1010458--1010661	62	3.4	62	84	9	275	26	20	25	26	1.99
1014758--1014782	13	1.9	13	100	0	50	36	16	16	32	1.90
1014825--1014877	20	2.7	19	91	5	88	39	18	11	30	1.86
1015495--1015790	48	6.1	48	79	7	310	32	16	26	24	1.96
1015805--1015956	28	5.3	29	85	7	188	17	15	29	36	1.91
1015947--1016021	35	2.2	35	87	2	116	34	10	33	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015999--1016170	29	5.9	29	78	4	150	25	15	30	28	1.96
1016016--1016176	86	1.9	86	84	2	216	24	14	30	30	1.95
1017612--1017683	1	72.0	1	74	0	63	4	2	5	87	0.73
1017600--1017683	34	2.5	34	88	5	118	3	2	8	85	0.79
1031042--1031163	52	2.3	52	94	0	217	26	18	19	35	1.95
1031172--1031196	13	1.9	13	100	0	50	36	16	16	32	1.90
1031258--1031282	13	1.9	13	100	0	50	32	16	16	36	1.90
1031237--1031302	33	2.0	33	94	2	116	36	18	12	33	1.88
1034308--1034333	13	2.0	13	100	0	52	30	15	15	38	1.88
1035032--1035075	21	2.1	21	83	8	54	25	31	4	38	1.76
1036879--1036904	13	2.0	13	100	0	52	38	15	15	30	1.88
1037107--1037138	8	4.0	8	100	0	64	62	25	0	12	1.30
1038992--1039022	15	2.1	15	93	0	53	12	22	16	48	1.80
1040826--1040870	21	2.1	21	84	8	56	22	20	4	53	1.63
1043093--1043118	13	2.0	13	100	0	52	30	15	15	38	1.88
1045453--1045517	21	3.1	21	77	18	64	4	24	1	69	1.16
1045959--1046031	20	3.7	20	98	0	137	35	13	10	39	1.80
1046966--1047011	21	2.2	20	82	14	58	26	17	15	41	1.88
1051282--1051864	162	3.6	164	82	6	653	30	9	9	50	1.68
1052226--1052250	11	2.3	11	100	0	50	76	8	16	0	1.02
1058344--1058368	13	1.9	13	100	0	50	32	20	16	32	1.94
1058324--1058386	32	1.9	33	87	3	92	31	15	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058667--1058725	29	2.0	29	100	0	118	55	27	10	6	1.58
1059930--1060576	155	4.2	153	79	5	527	25	17	19	37	1.93
1060008--1060692	155	4.4	154	80	5	555	25	16	19	38	1.92
1060164--1060723	310	1.8	308	79	7	650	24	16	20	38	1.92
1060730--1061025	164	1.8	164	88	0	457	28	20	17	34	1.95
1063164--1063378	111	1.9	112	81	2	263	32	16	17	33	1.93
1064073--1064146	37	2.0	37	100	0	148	40	18	18	21	1.91
1067209--1067247	21	1.9	21	94	5	71	25	20	12	41	1.88
1070311--1070565	80	3.2	80	81	5	250	30	12	25	30	1.93
1070311--1070595	80	3.6	80	78	6	249	29	14	26	29	1.95
1070550--1070623	28	2.6	28	86	0	103	22	20	31	25	1.98
1071193--1071246	20	2.6	21	85	2	74	42	12	16	27	1.85
1073753--1073968	98	2.2	98	84	3	283	28	21	12	37	1.90
1079312--1079385	20	3.8	19	87	8	96	31	14	17	36	1.90
1079413--1079466	20	2.7	20	88	5	74	33	14	14	37	1.88
1083252--1083474	79	2.8	78	81	5	241	31	14	27	26	1.95
1083350--1083553	107	1.9	107	83	7	263	30	16	27	25	1.96
1083668--1083739	27	2.6	27	82	2	81	23	20	30	25	1.99
1083540--1083715	80	2.2	79	86	1	235	30	15	25	28	1.96
1083726--1083909	51	3.6	50	78	11	178	34	9	24	31	1.88
1085449--1085490	21	2.0	21	90	0	66	30	19	9	40	1.83
1085515--1085565	19	2.7	19	100	0	102	37	19	11	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086452--1086536	27	3.1	27	66	21	68	29	22	23	24	1.99
1086336--1086866	55	9.3	55	79	9	498	25	21	26	26	1.99
1086336--1086866	110	4.6	111	83	7	563	25	21	26	26	1.99
1086336--1087055	165	4.3	165	76	16	565	26	20	26	25	1.99
1086675--1087058	211	1.8	211	89	2	610	27	20	26	25	1.99
1086893--1087092	62	3.4	60	85	9	245	29	19	26	25	1.98
1088043--1088131	1	89.0	1	75	0	79	0	4	7	87	0.66
1088043--1088130	29	3.0	29	88	6	115	0	4	7	87	0.66
1088044--1088131	19	4.6	18	86	11	113	0	4	7	87	0.66
1100554--1100755	79	2.6	79	82	4	221	30	15	28	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18