genome.fa.s23.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3125668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324422--324480	31	1.9	31	86	6	84	30	8	3	57	1.45
333000--334221	28	41.5	29	78	11	945	30	28	16	24	1.96
333007--334251	57	21.1	57	77	10	965	30	28	16	24	1.97
333429--333613	94	2.0	94	84	5	248	29	29	16	24	1.96
333675--334214	94	5.9	94	75	13	402	29	29	15	24	1.96
333116--334153	152	7.0	152	78	10	659	29	28	16	25	1.97
333856--334221	58	6.2	58	78	9	296	30	28	16	25	1.97
334263--334341	32	2.5	30	82	8	95	25	34	16	24	1.95
334394--334498	52	2.0	52	88	0	156	26	22	15	35	1.94
334529--334850	174	1.9	174	85	2	450	25	25	11	36	1.90
339463--339836	201	1.9	199	82	8	479	40	7	7	44	1.60
341060--341090	15	2.1	15	93	0	53	9	6	0	83	0.79
342241--342712	155	3.0	155	77	8	392	38	18	15	27	1.91
343542--343604	19	3.7	18	72	24	64	34	12	15	36	1.86
343544--343612	32	2.2	32	94	0	120	34	13	15	36	1.87
343657--343683	13	2.1	13	100	0	54	29	14	14	40	1.86
347179--347574	165	2.4	164	81	2	438	45	17	8	28	1.77
348874--349311	153	2.9	149	74	8	400	50	7	8	33	1.61
350234--350279	20	2.3	20	81	11	58	56	0	2	41	1.11
351293--351593	155	1.9	155	83	2	390	38	17	18	24	1.92
351294--351638	155	2.2	154	80	5	363	38	18	17	25	1.92
351535--352441	151	5.9	151	81	5	866	36	22	17	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354313--354376	14	4.7	13	76	16	58	65	1	0	32	1.02
354312--354362	27	1.9	27	88	4	77	66	1	0	31	1.03
354608--355015	166	2.4	164	79	6	385	50	7	12	29	1.66
354667--355015	166	2.1	166	84	5	454	51	7	11	29	1.64
354678--355091	166	2.5	163	81	6	431	49	7	11	31	1.66
356211--356236	13	2.0	13	100	0	52	38	15	15	30	1.88
358454--358498	21	2.1	21	84	8	56	53	4	20	22	1.63
360302--360340	15	2.6	15	91	0	60	51	15	20	12	1.76
362349--362428	20	3.8	20	75	15	79	26	15	15	43	1.85
362414--362452	13	3.0	13	96	0	69	30	17	15	35	1.91
362573--362619	21	2.3	21	79	20	55	34	19	4	42	1.70
362575--362617	20	2.2	19	84	16	52	32	18	4	44	1.71
363644--363699	20	2.8	19	89	5	76	39	14	16	30	1.88
363758--363783	13	2.0	13	100	0	52	38	15	15	30	1.88
365683--365799	50	2.3	51	86	1	173	27	17	11	42	1.85
365753--365828	31	2.5	31	100	0	152	28	18	13	39	1.88
368201--368904	79	9.0	78	80	6	620	27	25	12	33	1.93
368201--368917	236	3.0	233	82	5	811	27	25	12	34	1.92
371009--371046	4	9.5	4	88	11	60	21	2	0	76	0.91
371843--371905	19	3.6	19	76	24	84	33	12	19	34	1.89
371862--371919	13	4.0	13	74	23	53	34	15	17	32	1.91
371843--371918	32	2.4	32	97	0	143	32	14	18	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371958--371986	14	2.1	14	93	6	51	31	13	17	37	1.89
377374--377440	33	2.0	33	88	0	98	34	11	13	40	1.81
377394--377418	13	1.9	13	100	0	50	36	16	16	32	1.90
377484--377508	13	1.9	13	100	0	50	32	16	16	36	1.90
377517--377637	52	2.3	52	97	0	224	34	18	18	28	1.94
381676--381913	81	2.9	81	76	9	191	41	12	26	19	1.87
381780--381981	82	2.5	81	78	8	212	41	10	24	22	1.86
381685--381988	41	7.5	40	67	15	133	41	12	25	20	1.87
382539--382615	20	3.8	20	85	0	109	32	11	11	44	1.77
385739--385850	41	2.8	40	72	10	102	44	10	20	24	1.83
385739--385935	82	2.4	81	84	7	247	42	11	22	23	1.86
385764--385913	41	3.7	40	70	18	110	40	12	24	22	1.88
386504--386579	20	3.8	20	85	0	107	30	10	13	46	1.76
389675--390131	81	5.6	81	71	7	208	43	12	22	21	1.86
389687--390038	41	8.7	40	67	8	133	42	13	23	21	1.87
389687--390059	81	4.6	81	73	6	297	42	13	23	21	1.87
391923--392385	80	5.8	79	80	4	429	36	10	23	29	1.89
392336--392533	98	2.0	99	95	1	353	41	9	18	30	1.81
393133--393244	51	2.2	51	92	4	183	28	11	11	48	1.75
398386--398482	51	1.9	51	89	0	149	45	12	13	28	1.80
398539--398592	20	2.6	21	91	2	83	31	16	12	38	1.87
400446--400519	21	3.6	20	83	3	85	36	10	17	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400446--400499	20	2.7	20	88	2	81	37	9	18	35	1.83
405153--405216	20	3.5	20	72	27	79	37	14	15	32	1.87
405152--405229	33	2.4	33	93	0	138	37	14	14	34	1.86
405747--405839	34	2.8	32	90	4	132	32	11	24	31	1.91
406479--406533	19	2.9	19	78	5	67	29	0	5	65	1.15
406482--406515	9	3.7	9	96	4	59	23	0	2	73	0.97
406671--406713	21	2.0	21	86	0	59	16	2	25	55	1.53
407381--407504	40	3.2	40	69	19	134	23	14	14	47	1.81
407375--407529	77	2.0	77	98	0	301	25	14	12	47	1.80
413144--413198	20	2.7	19	78	13	56	29	14	16	40	1.88
416373--416424	19	2.6	21	88	8	74	26	15	17	40	1.89
420295--420345	25	2.0	25	92	0	84	45	3	25	25	1.71
421346--421823	242	2.0	242	97	0	911	38	15	21	25	1.92
423426--423997	284	2.0	284	89	2	862	26	26	15	32	1.95
425710--425764	19	2.8	19	88	2	74	32	18	10	38	1.85
427319--427397	20	3.8	20	79	12	79	35	16	10	37	1.82
428640--428751	49	2.3	49	100	0	224	29	16	16	38	1.90
434339--434376	15	2.7	14	88	8	51	23	21	10	44	1.83
434734--434780	23	2.0	23	91	0	76	53	17	21	8	1.70
444915--444961	23	2.0	23	87	0	67	48	14	25	10	1.76
447379--447431	19	2.7	19	79	5	61	43	13	13	30	1.82
447419--447444	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451875--452575	55	12.4	54	85	7	880	27	26	20	25	1.99
451875--452575	171	4.1	171	93	2	1150	27	26	20	25	1.99
451874--452575	226	3.1	220	85	6	933	27	26	20	25	1.99
453254--453321	19	3.9	19	76	21	76	36	11	13	38	1.81
453256--453318	32	2.0	32	93	0	108	36	12	14	36	1.84
453275--453299	13	1.9	13	100	0	50	36	16	16	32	1.90
453361--453386	13	2.0	13	100	0	52	30	15	15	38	1.88
453341--453407	33	2.0	33	88	0	98	25	14	16	43	1.86
455738--456079	52	6.5	53	69	17	196	30	26	11	31	1.92
455743--456078	104	3.2	103	70	13	288	30	25	12	31	1.92
456063--456139	28	2.8	28	87	0	100	23	33	19	23	1.97
455741--456146	212	1.9	212	88	3	620	28	27	13	30	1.94
455801--456218	107	3.9	107	72	9	287	27	27	14	29	1.95
456093--456294	78	2.6	79	82	3	230	24	30	16	28	1.96
458453--458628	30	5.6	30	70	15	104	23	29	10	36	1.88
458452--458743	129	2.3	130	90	1	453	22	29	11	36	1.89
458513--459008	34	14.9	33	78	8	332	21	27	11	40	1.87
458706--459010	98	3.1	97	84	6	371	20	26	10	42	1.84
458483--459010	98	5.3	98	75	9	360	21	27	11	39	1.87
459015--459624	33	18.7	33	79	6	546	30	32	17	19	1.95
459009--459623	65	9.4	65	78	7	430	30	32	17	19	1.95
459101--459624	164	3.2	162	82	6	553	30	33	17	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459626--459767	61	2.3	61	83	4	178	24	24	14	36	1.93
459622--459780	61	2.6	60	82	4	174	24	26	14	34	1.94
460441--460494	20	2.7	20	82	2	63	37	9	16	37	1.81
474148--474327	31	6.0	30	73	14	88	22	28	13	35	1.93
474148--474254	31	3.3	32	73	7	101	23	26	14	36	1.92
474142--474328	27	6.3	30	74	13	120	21	28	13	36	1.91
474152--474274	65	1.9	65	84	3	167	22	26	13	37	1.92
474296--474506	34	6.5	34	78	12	192	19	31	12	36	1.89
474432--474483	26	2.0	27	96	3	97	21	36	15	26	1.93
474499--474621	29	4.2	30	74	7	92	33	31	15	19	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18