genome.fa.s23.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3125668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100707--1100778	28	2.6	27	84	8	83	25	19	33	22	1.97
1100628--1100831	107	1.9	106	80	7	234	31	15	26	26	1.96
1100735--1101014	130	2.1	132	84	5	363	30	13	26	29	1.94
1100894--1101130	52	4.6	51	81	7	273	33	10	25	30	1.89
1103424--1103538	51	2.3	51	92	1	196	35	15	15	33	1.90
1103557--1103599	21	2.0	21	95	0	77	27	20	9	41	1.83
1107209--1107246	20	1.9	20	94	0	67	44	10	13	31	1.77
1107233--1107258	13	2.0	13	100	0	52	30	15	15	38	1.88
1109736--1109835	20	5.1	20	83	9	109	36	13	15	36	1.85
1109746--1109835	40	2.3	39	86	9	121	35	13	15	35	1.87
1112938--1113005	34	2.0	34	85	5	93	23	13	23	39	1.90
1113367--1113474	39	2.7	41	87	7	159	34	5	2	57	1.36
1114024--1114062	3	13.0	3	83	0	51	33	2	0	64	1.08
1114356--1114384	2	14.5	2	100	0	58	51	0	0	48	1.00
1115036--1115109	26	2.9	27	81	18	79	52	2	1	43	1.23
1124987--1125027	2	20.5	2	100	0	82	0	48	0	51	1.00
1125659--1125731	11	6.4	12	79	19	77	61	0	0	38	0.96
1126134--1126187	11	4.7	12	80	17	53	31	0	0	68	0.90
1126211--1126318	36	3.2	36	71	24	126	44	0	0	55	0.99
1126221--1126316	32	3.0	32	73	11	115	42	0	0	57	0.98
1126434--1126488	21	2.6	21	77	11	58	32	16	7	43	1.75
1127506--1127565	14	4.0	14	78	16	66	35	8	23	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127628--1127656	14	2.0	15	93	6	51	24	6	6	62	1.45
1130534--1130945	219	1.9	219	86	1	583	36	11	18	33	1.87
1134134--1134168	16	2.2	16	89	0	52	65	2	0	31	1.07
1134141--1134186	11	4.2	11	83	5	58	69	4	0	26	1.07
1136728--1136780	24	2.2	24	80	6	63	39	1	7	50	1.41
1137147--1137186	20	1.9	20	90	10	62	47	2	0	50	1.14
1138065--1138116	25	2.2	23	83	16	63	78	5	11	3	1.05
1139416--1139468	27	1.9	28	88	3	81	35	3	24	35	1.74
1144981--1145310	112	3.0	111	83	4	378	32	13	16	37	1.87
1146140--1146329	98	1.9	100	81	4	233	21	13	18	47	1.82
1146239--1146385	61	2.4	59	85	6	195	18	13	19	48	1.81
1147441--1147812	104	3.6	104	92	0	577	20	22	12	44	1.85
1147838--1148055	67	3.3	66	77	6	235	18	22	13	45	1.84
1147875--1148084	67	3.1	66	76	8	210	16	22	15	45	1.84
1147867--1148110	67	3.6	67	79	3	188	16	24	13	45	1.83
1149667--1149721	24	2.3	24	87	3	76	80	5	9	5	1.03
1150041--1150652	335	1.8	335	87	0	920	26	27	23	21	1.99
1153557--1153601	21	2.2	20	82	17	58	22	15	17	44	1.86
1154235--1154309	20	3.8	20	83	0	105	33	12	12	42	1.79
1154235--1154312	40	2.0	39	92	2	129	33	11	12	42	1.79
1154255--1154403	71	2.1	71	89	2	228	28	15	12	42	1.84
1154326--1154382	20	2.8	20	81	5	62	29	14	14	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154207--1154382	91	1.9	91	84	2	237	28	15	13	42	1.84
1154255--1154430	71	2.5	71	85	1	210	30	15	11	42	1.83
1168231--1168291	1	61.0	1	81	0	50	86	9	1	1	0.70
1168233--1168303	9	8.4	8	83	9	79	84	12	1	1	0.76
1168231--1168295	17	3.8	16	81	15	85	86	10	1	1	0.72
1168229--1168303	25	2.9	26	84	4	98	84	13	1	1	0.76
1169978--1170003	13	2.0	13	100	0	52	30	15	15	38	1.88
1170733--1171160	28	15.0	28	86	5	554	29	32	17	20	1.95
1170733--1171160	116	3.7	114	85	4	585	29	32	17	20	1.95
1171146--1171197	25	2.0	26	88	3	79	28	25	21	25	1.99
1171278--1171536	46	5.6	46	89	1	331	22	26	16	34	1.95
1171307--1171579	48	5.8	48	88	0	338	21	26	16	35	1.94
1172265--1172337	20	3.7	20	84	0	101	31	15	13	39	1.86
1178370--1178434	32	2.0	33	90	3	105	30	15	13	40	1.86
1178483--1178519	13	2.8	13	91	0	56	32	13	16	37	1.87
1186491--1186693	101	2.0	101	92	2	338	44	2	19	33	1.64
1195368--1195445	20	3.8	20	72	12	59	38	11	16	33	1.85
1206371--1206408	20	2.0	20	94	5	69	36	15	10	36	1.82
1206525--1206579	19	2.8	20	83	5	76	36	12	16	34	1.87
1207593--1207775	27	6.1	27	77	21	179	44	6	32	16	1.74
1207620--1207750	36	3.9	35	80	16	163	43	6	32	17	1.74
1207591--1207783	62	3.1	62	92	5	327	43	6	32	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1207718--1207775	26	2.1	27	90	6	91	44	6	32	15	1.73
1208988--1209652	79	8.4	79	90	1	1048	27	25	14	32	1.94
1209584--1209730	51	2.8	52	80	9	151	27	21	13	37	1.91
1215788--1216779	61	16.4	59	90	4	1396	25	28	19	26	1.98
1215788--1216778	121	8.2	121	90	3	1491	25	28	19	26	1.98
1216908--1217023	45	2.8	40	78	14	126	21	30	12	35	1.91
1216915--1217058	42	3.4	40	81	6	135	20	27	14	37	1.92
1216948--1217089	42	3.4	41	76	8	135	16	24	13	45	1.84
1217842--1217988	27	5.1	27	81	16	172	45	6	31	16	1.73
1217840--1217962	62	2.0	63	96	1	230	44	6	31	17	1.74
1217904--1217988	28	3.1	27	90	8	129	47	7	30	15	1.72
1219202--1219867	79	8.4	79	91	2	1068	26	25	15	32	1.95
1219799--1219945	52	2.8	51	77	7	154	26	23	14	36	1.93
1219799--1219945	51	2.9	51	79	7	156	26	23	14	36	1.93
1222716--1222747	7	4.6	7	92	0	55	50	37	0	12	1.41
1222951--1223039	13	5.9	13	69	27	52	35	11	17	34	1.86
1222964--1223058	19	5.7	18	71	27	84	34	10	17	36	1.85
1222950--1223065	32	3.6	32	94	0	205	34	11	17	37	1.85
1225271--1225313	14	2.8	16	86	10	63	79	20	0	0	0.74
1226544--1226973	34	13.3	32	75	11	256	20	32	12	34	1.90
1226505--1226722	30	7.3	29	70	14	120	22	30	13	33	1.93
1226541--1226751	91	2.3	91	81	8	214	22	33	13	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226689--1226949	33	7.7	33	82	6	283	18	33	13	34	1.89
1226964--1227041	28	2.6	30	80	11	90	34	26	19	19	1.95
1227194--1227271	39	2.0	39	92	0	129	28	25	21	24	1.99
1227233--1228615	52	27.8	49	77	9	1266	23	25	17	33	1.96
1227325--1228513	101	11.9	101	86	4	1311	23	25	17	33	1.96
1227100--1228512	297	4.8	292	84	7	1423	23	25	17	33	1.97
1229114--1229142	15	1.9	15	100	0	58	27	20	24	27	1.99
1229334--1229419	32	2.7	32	96	0	154	33	12	13	39	1.83
1229351--1229411	19	3.5	19	75	25	80	34	13	14	37	1.85
1229463--1229489	13	2.1	13	100	0	54	29	14	14	40	1.86
1236800--1236918	21	5.7	21	91	2	186	33	11	18	36	1.87
1236954--1237021	19	3.9	19	78	21	85	35	10	14	39	1.80
1236956--1237016	32	1.9	32	96	0	113	34	9	16	39	1.82
1237061--1237086	13	2.0	13	100	0	52	30	15	15	38	1.88
1237041--1237107	33	2.0	33	88	0	98	25	14	16	43	1.86
1239564--1239636	27	2.6	28	81	14	89	24	35	20	19	1.95
1239455--1239788	51	6.4	51	71	12	221	30	25	11	31	1.91
1239455--1239847	211	1.9	211	88	2	592	29	27	12	30	1.93
1242738--1243183	166	2.7	165	88	3	671	41	12	10	35	1.78
1243896--1243956	20	3.0	20	68	17	54	49	29	1	19	1.58
1244103--1244153	24	2.2	22	86	6	66	3	17	1	76	1.03
1244105--1244153	22	2.2	22	82	7	55	4	18	2	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244658--1245140	167	2.9	164	80	7	474	51	9	9	28	1.66
1247187--1247294	52	2.1	52	82	3	128	33	16	14	35	1.90
1249721--1249794	33	2.2	32	77	11	78	43	1	21	33	1.61
1249722--1249785	33	1.9	33	84	9	85	43	1	20	34	1.61
1249945--1249969	13	1.9	13	100	0	50	32	8	16	44	1.76
1251882--1252221	169	2.0	169	96	0	626	26	17	15	41	1.88
1255337--1255362	13	2.0	13	100	0	52	38	15	15	30	1.88
1255400--1255489	13	6.0	13	69	26	54	34	16	13	35	1.88
1255414--1255507	19	5.6	18	68	27	73	35	19	11	34	1.88
1255401--1255507	32	3.3	32	93	0	178	34	18	13	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18