genome.fa.s247.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  1  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2600--2624	12	2.1	12	100	0	50	20	56	8	16	1.65
7310--7462	15	9.9	15	71	23	70	38	0	0	60	1.07
7307--7467	24	7.0	22	67	26	70	38	0	0	60	1.06
7310--7467	7	20.2	8	70	22	74	38	0	0	60	1.06
7359--7442	33	2.6	33	81	7	100	42	0	1	55	1.07
7322--7467	48	3.1	43	75	18	123	39	0	0	59	1.07
7584--7630	24	1.9	25	83	12	62	59	0	0	40	0.97
7584--7640	20	2.8	21	79	12	66	57	0	0	42	0.98
8146--8208	11	5.8	11	76	14	51	65	3	0	31	1.09
9155--9225	23	3.1	22	82	8	79	53	0	0	46	1.00
9163--9258	19	5.3	18	74	13	63	45	0	0	54	0.99
9219--9253	17	2.1	17	88	0	52	40	0	0	60	0.97
9170--9241	23	3.1	24	75	20	80	45	0	0	54	0.99
9560--9619	20	3.1	19	85	7	75	45	0	0	55	0.99
9560--9619	19	3.1	19	77	13	59	45	0	0	55	0.99
9548--9620	20	3.9	19	75	10	71	49	0	0	50	1.00
9534--9620	36	2.4	37	81	14	101	47	0	0	52	1.00
9528--9631	42	2.6	39	76	17	106	46	0	0	53	1.00
9560--9638	20	3.8	19	73	16	68	44	1	0	54	1.08
10026--10075	2	25.0	2	100	0	100	50	0	50	0	1.00
16909--16936	2	14.0	2	100	0	56	50	0	0	50	1.00
17772--17811	22	1.9	20	85	10	53	32	7	2	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19081--19150	20	3.8	19	72	24	60	54	0	0	45	0.99
20147--20186	2	20.0	2	100	0	80	50	0	0	50	1.00
21698--21832	66	2.0	66	100	0	270	25	11	28	34	1.91
23997--24044	2	24.0	2	100	0	96	50	0	50	0	1.00
28007--28074	29	2.4	28	80	7	84	47	0	0	52	1.00
30614--30666	23	2.3	23	83	6	63	35	3	0	60	1.15
30623--30668	11	4.0	11	83	8	56	34	4	0	60	1.16
30628--30676	23	2.1	23	84	0	62	34	4	2	59	1.28
30709--30741	14	2.3	15	85	15	52	21	0	6	72	1.05
30736--30775	19	2.2	18	83	12	55	27	2	0	70	1.01
30949--31055	55	1.9	56	83	5	137	22	2	8	66	1.32
31076--31119	22	2.0	22	81	4	52	38	4	6	50	1.50
31896--31980	44	2.0	42	82	11	102	36	10	10	42	1.74
32782--32838	18	3.1	18	74	16	53	61	1	0	36	1.07
33680--33719	2	20.0	2	100	0	80	50	0	0	50	1.00
33780--34131	174	2.0	174	93	1	607	49	5	12	32	1.65
34147--34180	17	2.0	17	88	0	50	47	0	0	52	1.00
35346--35403	18	3.4	18	73	26	63	39	0	5	55	1.22
35352--35402	16	3.2	15	72	22	50	39	0	3	56	1.18
37567--37604	15	2.7	15	92	8	62	50	0	0	50	1.00
39021--39195	50	3.5	50	81	1	181	29	16	20	33	1.94
45581--45617	17	2.1	18	90	5	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50091--50132	18	2.4	17	84	7	57	64	0	0	35	0.94
50200--50227	2	14.0	2	100	0	56	50	0	0	50	1.00
54655--54710	12	4.7	12	77	4	51	48	0	0	51	1.00
54849--54883	2	17.5	2	100	0	70	48	0	0	51	1.00
55700--55773	34	2.3	34	80	13	86	28	2	2	66	1.19
60622--60661	2	20.0	2	94	0	71	47	0	2	50	1.14
61238--61263	2	13.0	2	100	0	52	50	50	0	0	1.00
62243--62305	10	6.0	11	78	14	62	66	1	0	31	1.01
62242--62311	29	2.4	29	86	6	90	67	1	0	31	1.00
62247--62298	25	2.0	25	85	10	70	67	1	0	30	1.02
62250--62417	29	5.8	29	70	16	91	58	1	0	39	1.05
65407--65439	17	1.9	17	93	0	57	27	0	0	72	0.85
70335--70373	2	19.5	2	100	0	78	48	0	0	51	1.00
74619--74654	2	18.0	2	100	0	72	50	0	0	50	1.00
75287--75329	4	11.8	4	90	9	58	81	0	18	0	0.69
75287--75356	12	6.4	11	77	22	60	78	0	21	0	0.75
75359--75449	27	3.1	27	76	15	74	30	0	3	65	1.08
75406--75431	10	2.6	10	100	0	52	30	0	0	69	0.89
75377--75467	37	2.6	34	82	10	94	34	0	2	63	1.06
75788--75828	9	4.6	9	84	9	57	87	0	12	0	0.53
75782--75818	10	3.7	10	89	10	58	89	0	10	0	0.49
75782--75830	23	2.2	22	89	7	73	85	0	14	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75781--75830	10	5.2	10	81	16	52	84	0	16	0	0.63
75844--75881	19	2.0	19	89	0	58	31	2	0	65	1.06
75931--75970	17	2.3	18	86	4	55	32	5	7	55	1.50
76399--76442	20	2.2	20	87	0	61	20	0	4	75	0.98
77359--77398	16	2.5	17	76	15	50	45	0	0	55	0.99
77361--77401	17	2.6	17	81	11	52	43	0	0	56	0.99
77899--77939	16	2.4	16	88	8	55	31	0	0	68	0.90
77899--77953	12	4.3	13	77	11	60	30	0	0	69	0.89
77894--77954	18	3.4	17	74	22	52	29	0	0	70	0.88
82384--82425	22	2.0	20	90	9	66	0	11	2	85	0.68
82389--82422	14	2.4	14	90	9	52	0	8	2	88	0.62
83373--83405	2	16.5	2	100	0	66	51	0	48	0	1.00
83403--83429	3	9.0	3	100	0	54	66	0	33	0	0.92
83494--83537	16	2.9	15	86	3	52	34	2	0	63	1.07
83499--83557	31	1.9	31	85	0	82	38	3	0	57	1.15
83607--83678	26	2.7	27	80	4	65	41	4	1	52	1.29
84934--84979	2	23.0	2	100	0	92	50	0	0	50	1.00
90332--90922	316	1.9	316	83	2	778	27	15	19	37	1.92
100582--100619	2	19.0	2	100	0	76	0	50	0	50	1.00
101462--101559	9	10.4	9	70	15	65	57	1	5	36	1.28
101494--101568	20	3.5	21	78	12	73	56	1	2	40	1.22
102276--102306	14	2.1	15	94	5	55	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103258--103305	25	2.0	24	84	12	62	58	4	4	33	1.36
103742--103845	38	2.8	37	79	12	99	43	2	0	53	1.15
107582--107606	13	1.9	13	100	0	50	12	0	0	88	0.53
108202--108275	20	3.7	20	81	3	103	35	13	20	31	1.91
108220--108295	21	3.7	21	82	3	109	40	11	18	28	1.86
108202--108295	41	2.3	41	100	0	188	38	12	19	29	1.89
108334--108359	13	2.0	13	100	0	52	38	15	15	30	1.88
108818--108884	37	1.9	35	88	11	102	32	11	25	29	1.92
110398--110558	84	1.9	84	80	9	186	53	3	17	25	1.60
112011--112035	13	1.9	13	100	0	50	36	16	16	32	1.90
113690--113763	20	3.7	20	81	3	103	35	13	20	31	1.91
113708--113783	21	3.7	21	82	3	109	40	11	18	28	1.86
113690--113783	41	2.3	41	100	0	188	38	12	19	29	1.89
113822--113847	13	2.0	13	100	0	52	38	15	15	30	1.88
114306--114372	37	1.9	35	88	11	102	32	11	25	29	1.92
124295--124324	2	15.0	2	100	0	60	50	0	50	0	1.00
124425--124450	3	8.7	3	100	0	52	69	0	0	30	0.89
124698--124749	27	1.9	27	100	0	104	44	3	3	48	1.39
126358--126397	18	2.4	16	84	15	62	47	0	0	52	1.00
126363--126398	18	2.0	18	100	0	72	50	0	0	50	1.00
131083--131114	3	10.7	3	100	0	64	68	0	0	31	0.90
131132--131170	13	3.1	13	85	14	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132060--132099	11	3.6	11	86	10	55	50	0	0	50	1.00
132066--132096	16	1.9	16	100	0	62	45	0	0	54	0.99
132549--132583	18	2.0	17	94	5	61	51	0	2	45	1.16
132561--132604	23	2.0	23	86	4	63	50	0	2	47	1.13
132971--133003	17	1.9	17	88	11	50	57	0	0	42	0.98
133755--133825	4	17.8	4	88	0	70	38	0	11	50	1.38
133757--133815	10	6.3	10	81	15	81	38	0	10	50	1.36
133757--133829	14	5.2	14	89	0	92	36	0	12	50	1.40
133755--133825	18	3.9	18	96	0	106	38	0	11	50	1.38
134784--134876	38	2.5	37	73	15	91	52	4	1	41	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29