genome.fa.s247.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  27  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4233468--4233538	28	2.6	28	90	2	117	22	23	22	30	1.99
4233389--4233580	106	1.8	107	87	1	287	26	21	16	34	1.95
4233524--4233786	79	3.4	79	77	11	242	28	22	13	36	1.92
4235003--4235036	16	2.1	16	88	0	50	23	14	8	52	1.69
4235845--4235916	13	5.5	13	69	19	51	73	1	16	8	1.14
4235862--4235921	12	4.9	12	75	17	52	73	1	16	8	1.16
4236662--4236691	16	1.9	16	93	6	53	30	20	13	36	1.90
4238421--4238460	20	2.0	20	90	0	62	35	15	15	35	1.88
4238419--4238487	33	2.1	33	89	5	104	36	17	14	31	1.90
4239111--4239183	22	3.4	22	78	3	67	28	28	5	36	1.79
4239111--4239164	21	2.5	21	87	3	72	33	24	3	38	1.73
4247223--4247289	33	2.0	33	85	5	91	35	16	13	34	1.88
4247318--4247371	20	2.8	20	91	2	83	37	18	12	31	1.89
4247912--4248011	35	2.8	37	84	7	152	35	24	3	38	1.71
4253508--4253602	36	2.9	31	80	16	104	31	24	12	31	1.92
4254044--4254106	32	2.0	32	93	0	108	41	9	22	26	1.84
4254085--4254115	10	3.1	10	90	0	53	41	6	29	22	1.78
4254159--4254219	30	2.0	30	96	0	113	44	16	11	27	1.82
4257331--4257356	13	2.0	13	100	0	52	38	15	15	30	1.88
4257311--4257377	33	2.0	33	88	5	100	34	19	14	31	1.92
4257406--4257460	20	2.8	20	91	2	85	36	18	12	32	1.88
4257446--4257472	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4259619--4259668	20	2.5	20	90	3	75	26	12	22	40	1.88
4265941--4266001	32	1.9	32	83	6	79	36	16	14	32	1.89
4268397--4268460	33	2.0	32	87	3	92	28	14	18	39	1.90
4271909--4271947	21	1.9	20	89	5	60	38	12	12	35	1.82
4272604--4273266	49	13.8	49	76	10	487	31	17	26	25	1.97
4272901--4273052	39	3.6	39	76	16	160	26	20	26	26	1.99
4272852--4273198	88	3.9	87	84	6	428	29	18	25	25	1.98
4273300--4273448	28	5.1	29	80	10	151	19	16	33	30	1.94
4274103--4274165	21	3.0	21	63	19	51	25	17	30	26	1.97
4274130--4274269	52	2.8	52	84	3	178	30	16	28	24	1.96
4274141--4274562	49	8.8	49	82	7	431	30	16	27	26	1.97
4274196--4274367	88	2.0	88	89	0	263	28	18	26	26	1.98
4274284--4274562	97	2.9	97	85	3	382	29	15	26	27	1.96
4274623--4274784	28	5.6	28	79	12	168	19	15	33	30	1.93
4274666--4274785	61	2.0	61	88	3	179	20	16	35	27	1.94
4277959--4278004	10	4.6	10	77	20	51	0	2	13	84	0.71
4277957--4278009	19	2.6	19	82	14	61	0	1	13	84	0.69
4279385--4279440	14	4.0	13	84	11	67	0	1	17	80	0.80
4279388--4279449	17	3.9	17	74	23	64	1	1	17	79	0.90
4284853--4284878	13	2.0	13	100	0	52	38	15	15	30	1.88
4286392--4286433	18	2.4	17	84	11	57	0	9	4	85	0.72
4291731--4291766	18	2.0	18	100	0	72	22	16	5	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4293429--4293542	51	2.2	51	85	4	149	29	14	14	40	1.87
4294564--4294619	19	2.9	19	89	5	85	33	12	17	35	1.88
4294564--4294618	20	2.8	20	91	2	85	32	12	18	36	1.88
4294650--4294700	20	2.5	20	87	6	68	35	13	17	33	1.89
4302761--4302841	36	2.2	37	91	2	128	34	2	25	37	1.70
4303385--4303439	20	2.8	19	83	5	74	32	10	18	38	1.85
4303468--4303520	20	2.7	20	100	0	106	33	15	18	32	1.92
4303503--4303533	13	2.4	13	94	0	53	35	16	12	35	1.87
4303483--4303553	33	2.2	33	87	5	99	35	14	16	33	1.89
4313165--4313218	20	2.7	20	88	0	72	33	18	12	35	1.89
4313983--4314040	29	2.0	29	93	0	98	20	24	0	55	1.44
4315995--4316026	17	1.9	17	93	6	57	50	12	0	37	1.41
4319298--4319326	10	2.7	11	94	5	51	51	0	13	34	1.42
4320568--4320593	13	2.0	13	100	0	52	30	15	15	38	1.88
4320632--4320707	21	3.7	21	80	3	100	28	17	11	42	1.84
4320653--4320725	20	3.6	20	81	3	101	31	19	13	35	1.91
4320632--4320725	41	2.3	41	98	0	179	29	18	12	39	1.88
4323164--4323202	13	3.0	13	96	0	69	35	15	17	30	1.91
4323188--4323266	20	3.7	20	75	18	70	45	15	13	25	1.83
4325281--4325311	15	2.1	15	93	0	53	12	22	16	48	1.80
4329370--4329395	13	2.0	13	100	0	52	30	15	15	38	1.88
4329434--4329509	21	3.7	21	80	3	100	28	17	11	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4329455--4329527	20	3.6	20	81	3	101	31	19	13	35	1.91
4329434--4329527	41	2.3	41	98	0	179	29	18	12	39	1.88
4331003--4331079	20	3.8	20	83	6	102	40	11	15	32	1.84
4330974--4331133	51	3.4	49	72	21	144	38	13	18	29	1.89
4330974--4331218	88	2.7	89	85	6	318	38	13	16	31	1.88
4331184--4331228	20	2.2	20	84	0	63	40	11	13	35	1.80
4332199--4332525	78	3.9	83	85	6	387	23	16	30	29	1.96
4332247--4332502	50	4.6	51	77	15	235	23	17	29	30	1.97
4332094--4332519	28	15.1	28	81	9	411	24	17	29	28	1.97
4333769--4333830	18	3.6	16	81	12	70	3	1	9	85	0.78
4333769--4333827	8	6.9	8	75	11	55	3	1	10	84	0.80
4333769--4333828	19	3.4	17	80	14	68	3	1	10	85	0.79
4347691--4347765	20	3.8	19	82	7	96	38	14	14	32	1.87
4347784--4347835	20	2.6	20	81	0	59	36	13	13	36	1.84
4347708--4347896	71	2.7	71	89	3	299	40	12	16	30	1.86
4350749--4350802	20	2.7	20	85	0	63	33	12	14	38	1.85
4350717--4350853	71	1.9	71	88	2	204	28	14	12	44	1.81
4356332--4357258	154	6.0	154	82	4	953	36	20	18	24	1.95
4356376--4357305	462	2.0	462	83	3	1165	35	20	19	24	1.95
4359290--4359317	12	2.3	12	100	0	56	28	14	25	32	1.94
4359693--4360105	165	2.5	166	78	9	461	51	9	9	29	1.66
4362096--4362164	28	2.5	28	88	4	95	26	17	34	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4362017--4362432	107	3.9	105	74	13	339	30	14	27	27	1.95
4362188--4362324	52	2.6	52	82	8	154	33	13	24	27	1.94
4362311--4362378	27	2.5	27	86	11	95	22	22	30	25	1.99
4362089--4362492	211	1.9	211	87	4	600	31	13	26	27	1.94
4364855--4364880	13	2.0	13	100	0	52	38	15	15	30	1.88
4364834--4364900	33	2.0	33	85	0	89	44	16	14	23	1.85
4364920--4364987	19	3.9	18	76	23	83	38	14	11	35	1.83
4364942--4364966	13	1.9	13	100	0	50	32	16	16	36	1.90
4364923--4364985	32	2.0	32	96	0	117	36	15	12	34	1.86
4365826--4365912	28	3.1	28	62	21	65	22	21	29	25	1.99
4365806--4366648	55	15.3	55	93	3	1285	20	20	30	28	1.97
4365880--4366630	28	27.2	28	61	20	183	20	19	31	28	1.97
4367615--4367685	8	8.8	8	73	13	56	0	11	5	83	0.81
4367631--4367686	12	4.4	13	74	17	55	0	7	7	85	0.73
4367641--4367685	23	1.9	24	90	4	74	0	6	6	86	0.70
4367648--4367688	15	2.7	15	92	3	64	0	7	4	87	0.65
4373352--4373385	17	2.0	17	88	0	50	5	26	17	50	1.69
4380246--4380310	27	2.4	27	84	7	78	26	15	35	23	1.94
4380164--4380579	106	3.9	107	73	13	338	30	14	27	27	1.95
4380334--4380470	52	2.6	52	82	8	154	33	13	24	28	1.93
4380457--4380527	27	2.6	27	88	2	97	22	21	32	23	1.98
4383001--4383026	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4382980--4383046	33	2.0	33	88	0	98	43	16	14	25	1.86
4383066--4383133	19	3.9	18	76	23	83	38	14	11	35	1.83
4383088--4383112	13	1.9	13	100	0	50	32	16	16	36	1.90
4383069--4383131	32	2.0	32	96	0	117	36	15	12	34	1.86
4390697--4390721	6	4.2	6	100	0	50	16	0	16	68	1.22
4392577--4392867	79	3.7	78	82	4	307	35	11	24	28	1.90
4392445--4392867	157	2.8	152	77	8	405	34	11	24	29	1.91
4392827--4392893	28	2.4	27	80	9	73	28	14	28	28	1.96
4395339--4395468	50	2.5	52	81	2	165	43	13	14	28	1.84
4395525--4395578	20	2.6	21	80	13	67	35	16	9	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29