genome.fa.s247.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  17  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2569494--2569561	33	2.1	32	91	8	111	35	16	16	32	1.91
2571119--2571144	13	2.0	13	100	0	52	30	15	15	38	1.88
2571204--2571276	20	3.6	20	81	3	101	31	19	13	35	1.91
2571183--2571276	41	2.3	41	96	0	170	30	18	12	38	1.88
2571183--2571258	21	3.7	21	78	3	91	30	17	11	40	1.85
2573723--2573761	13	3.0	13	96	0	69	35	15	17	30	1.91
2573747--2573825	20	3.7	20	75	18	70	45	15	13	25	1.83
2575843--2575873	15	2.1	15	93	0	53	12	22	16	48	1.80
2579935--2579960	13	2.0	13	100	0	52	30	15	15	38	1.88
2580020--2580092	20	3.6	20	81	3	101	31	19	13	35	1.91
2579999--2580092	41	2.3	41	96	0	170	30	18	12	38	1.88
2579999--2580074	21	3.7	21	78	3	91	30	17	11	40	1.85
2581472--2581509	19	2.0	20	84	5	51	65	5	0	28	1.14
2581496--2581548	15	3.4	15	73	5	52	52	3	0	43	1.19
2582115--2582188	30	2.4	32	86	4	107	58	1	1	39	1.15
2582115--2582201	16	5.5	16	72	6	79	56	2	1	40	1.19
2583027--2583095	29	2.3	30	69	13	54	50	0	1	47	1.09
2583005--2583077	36	2.1	35	85	12	96	54	0	0	45	0.99
2583611--2583684	27	2.8	25	73	18	62	54	0	0	45	1.00
2588117--2588505	156	2.5	157	82	2	431	37	15	21	25	1.93
2588259--2588516	52	4.9	53	74	7	231	38	16	21	24	1.93
2588764--2588995	33	7.0	33	75	8	175	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2589208--2589263	25	2.2	26	83	6	69	35	14	16	33	1.88
2589208--2589263	13	4.3	13	81	6	69	35	14	16	33	1.88
2589703--2589758	21	2.7	21	94	0	94	32	10	17	39	1.84
2589743--2589782	20	2.0	20	90	0	62	32	12	7	47	1.69
2593036--2593065	15	2.0	15	100	0	60	40	20	13	26	1.89
2593443--2593480	17	2.4	16	86	8	51	65	0	0	34	0.93
2594756--2595029	135	2.0	134	94	1	478	43	12	10	33	1.77
2595767--2595819	26	2.0	26	82	7	63	64	3	0	32	1.12
2598455--2598518	19	3.4	18	77	10	65	79	0	15	4	0.89
2599327--2599389	29	2.2	29	85	5	83	31	11	9	47	1.71
2599891--2599970	39	2.1	39	80	4	90	27	11	22	38	1.88
2608009--2608042	16	2.1	16	89	10	52	76	0	14	8	1.01
2609170--2609209	21	2.0	21	90	5	64	42	15	15	27	1.86
2609254--2609317	13	5.4	13	76	17	68	37	14	15	32	1.87
2609238--2609337	33	3.0	32	94	5	157	37	13	18	32	1.88
2609272--2609337	20	3.7	20	73	26	83	39	12	18	30	1.87
2609676--2609767	43	2.1	43	93	0	157	36	3	28	31	1.73
2609743--2609776	15	2.1	17	89	10	54	35	0	35	29	1.58
2610324--2610363	21	2.0	21	90	5	64	42	15	15	27	1.86
2610408--2610471	13	5.4	13	75	17	59	39	14	14	32	1.85
2610392--2610491	33	3.0	32	92	5	148	38	13	17	32	1.87
2610426--2610491	20	3.7	20	69	26	74	40	12	16	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2618507--2618535	15	1.9	15	100	0	58	31	0	34	34	1.58
2618472--2618587	58	2.0	58	98	0	223	35	2	32	29	1.71
2618496--2618587	15	5.1	17	70	27	57	34	2	33	29	1.70
2619145--2619170	13	2.0	13	100	0	52	30	15	15	38	1.88
2619125--2619189	32	2.0	32	100	0	130	30	15	15	38	1.88
2619156--2619211	19	2.8	20	86	8	78	33	14	17	33	1.90
2619256--2619286	13	2.4	13	94	0	53	35	16	12	35	1.87
2621021--2621138	40	2.9	40	78	2	128	22	19	16	41	1.90
2621169--2621259	41	2.2	41	82	3	112	24	18	13	43	1.85
2621064--2621253	106	1.8	105	83	2	256	23	19	13	44	1.85
2621185--2621270	41	2.1	41	82	4	102	23	17	15	44	1.86
2621056--2621319	146	1.8	146	86	3	388	22	20	13	43	1.86
2621052--2621363	146	2.1	147	82	3	387	23	20	13	42	1.88
2621273--2621754	100	4.6	102	76	7	305	23	18	14	43	1.87
2621734--2621846	41	2.8	41	77	0	136	23	25	15	35	1.94
2632030--2632080	26	2.0	26	84	0	66	68	5	5	19	1.31
2636608--2636642	16	2.2	16	89	0	52	22	25	0	51	1.48
2638379--2638433	26	2.1	26	96	0	101	40	14	5	40	1.69
2638668--2638694	14	1.9	14	100	0	54	22	0	18	59	1.38
2640246--2640322	28	2.8	28	84	4	93	33	9	11	45	1.72
2641193--2641246	20	2.7	20	91	2	81	40	7	16	35	1.77
2641308--2641361	20	2.7	20	91	0	81	25	14	7	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2641363--2641462	52	1.9	52	85	4	139	33	16	12	39	1.85
2643825--2644025	79	2.6	79	81	2	217	28	22	11	36	1.90
2644173--2644974	60	13.3	60	89	4	1161	26	27	19	26	1.99
2644173--2644974	121	6.7	119	88	4	1157	26	27	19	26	1.99
2644993--2645187	55	3.4	56	81	7	232	27	26	19	26	1.99
2645049--2645341	155	1.9	154	87	2	424	26	29	18	25	1.98
2645258--2645402	60	2.4	60	85	6	186	26	28	18	25	1.98
2644768--2645607	427	1.9	428	84	5	1120	26	28	18	27	1.98
2644768--2645617	215	3.9	215	85	5	1047	26	28	18	26	1.98
2645447--2645675	122	1.9	121	86	2	325	27	26	21	25	1.99
2645441--2645683	61	4.0	60	80	6	267	25	26	20	26	1.99
2645659--2645762	42	2.4	43	78	7	106	20	24	17	38	1.93
2646409--2646465	20	2.8	20	86	0	87	26	17	12	43	1.84
2646447--2646476	13	2.3	13	94	0	51	30	13	13	43	1.82
2646463--2646534	29	2.5	29	93	0	117	26	13	18	41	1.87
2646538--2646607	33	2.1	33	94	0	122	30	18	11	40	1.86
2646521--2646627	53	2.0	53	83	7	137	30	16	11	41	1.84
2646569--2646628	20	3.0	20	85	7	86	30	18	11	40	1.86
2646558--2646588	13	2.4	13	100	0	62	29	16	16	38	1.90
2648935--2649093	51	3.1	51	83	3	160	29	25	10	34	1.90
2649034--2649444	79	5.2	79	80	3	400	26	25	14	33	1.94
2650447--2650565	52	2.3	52	85	4	152	25	26	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2650551--2650647	28	3.5	28	90	2	151	32	32	10	23	1.89
2657778--2657857	8	9.5	8	71	15	54	70	11	2	16	1.27
2658789--2658846	15	4.1	14	73	22	50	41	1	0	56	1.09
2658803--2658854	23	2.2	23	86	10	70	46	1	0	51	1.12
2659241--2659286	19	2.4	19	89	7	67	19	0	8	71	1.11
2661027--2661053	14	1.9	14	100	0	54	22	0	11	66	1.22
2662840--2662865	2	13.0	2	100	0	52	0	50	0	50	1.00
2662962--2662994	2	17.0	2	93	6	59	48	0	0	51	1.00
2666381--2666420	21	1.9	21	89	0	62	50	5	12	32	1.62
2672526--2672590	30	2.2	30	81	10	71	26	4	3	66	1.26
2678430--2678508	39	2.0	39	85	4	106	37	2	25	34	1.70
2678563--2678656	48	2.0	48	87	8	138	46	1	31	20	1.57
2679601--2679801	79	2.6	78	79	7	194	45	12	12	29	1.79
2679698--2679801	39	2.6	40	72	1	93	49	11	9	29	1.71
2679568--2679836	79	3.4	78	77	7	188	43	11	13	31	1.80
2679620--2679877	79	3.3	77	76	8	184	44	10	12	32	1.76
2687153--2687185	2	16.5	2	100	0	66	48	0	0	51	1.00
2689567--2689619	18	2.9	18	83	8	63	50	11	5	32	1.61
2690469--2690535	28	2.4	28	82	9	84	53	1	1	43	1.19
2690469--2690535	15	4.9	12	74	22	53	53	1	1	43	1.19
2691183--2691266	19	4.7	19	81	18	108	33	11	17	36	1.87
2691223--2691247	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2691204--2691268	32	2.0	32	96	0	121	33	12	16	36	1.87
2691310--2691438	52	2.5	52	97	0	240	34	17	18	29	1.94
2692292--2692333	21	2.0	21	86	4	59	21	14	16	47	1.82
2694592--2694630	20	2.0	20	94	0	69	38	12	17	30	1.88
2699539--2699595	13	3.9	13	76	24	60	36	14	15	33	1.88
2699552--2699614	19	3.6	19	74	24	75	34	12	15	36	1.86
2699519--2699616	32	3.0	32	93	1	160	36	12	16	34	1.86
2699635--2699675	15	2.9	15	92	7	68	34	14	14	36	1.87
2699684--2699860	52	3.4	52	98	0	336	35	18	18	27	1.94
2705471--2705531	1	61.0	1	73	0	50	86	4	8	0	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29