genome.fa.s247.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  23  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3613563--3613822	143	1.8	144	81	9	325	25	14	18	41	1.88
3615650--3615703	27	2.0	28	89	10	85	33	11	29	25	1.91
3619824--3619860	6	6.2	6	100	0	74	32	0	0	67	0.91
3624922--3625314	158	2.4	159	83	8	465	34	10	5	49	1.60
3629834--3629892	21	2.8	20	77	10	64	20	27	1	50	1.57
3632108--3632247	70	2.0	70	95	2	255	37	12	20	28	1.90
3632338--3632412	20	3.8	20	87	0	114	34	13	12	40	1.81
3637350--3637407	21	2.8	21	81	5	73	36	15	15	32	1.89
3637443--3637510	19	3.9	19	74	21	76	33	11	14	39	1.83
3637550--3637575	13	2.0	13	100	0	52	30	15	15	38	1.88
3639931--3640114	79	2.3	79	94	0	314	28	25	14	32	1.94
3640054--3640176	51	2.3	53	86	4	169	30	25	13	31	1.93
3640156--3640231	27	2.8	28	85	2	100	23	32	21	22	1.98
3640023--3640331	160	1.9	159	86	7	439	27	26	14	31	1.95
3640214--3640380	52	3.2	53	77	11	166	29	25	12	32	1.92
3640367--3640443	28	2.8	28	83	0	82	22	32	20	24	1.98
3642378--3642511	49	2.7	51	89	4	202	43	13	15	27	1.84
3643126--3643230	44	2.4	41	82	11	129	46	10	29	13	1.76
3643234--3643348	42	2.8	41	81	12	137	40	14	25	20	1.90
3643234--3643382	44	3.5	44	78	13	132	38	14	25	22	1.91
3643234--3643382	42	3.5	42	82	8	133	38	14	25	22	1.91
3643371--3643942	62	9.2	61	83	7	672	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3643363--3643942	124	4.7	124	85	3	765	31	19	24	24	1.98
3644966--3645001	13	2.7	13	86	4	54	0	2	13	83	0.76
3645233--3645301	35	1.9	36	85	2	95	7	8	7	76	1.15
3648174--3648227	21	2.7	19	80	5	63	38	12	14	33	1.85
3648215--3648239	13	1.9	13	100	0	50	36	16	16	32	1.90
3648196--3648266	32	2.2	32	89	0	115	36	11	18	33	1.86
3648196--3648256	19	3.6	18	72	25	60	34	11	19	34	1.88
3648302--3648408	52	2.0	53	87	5	155	30	15	16	36	1.91
3656425--3656526	43	2.4	43	88	6	145	46	11	28	13	1.79
3656511--3656623	41	2.7	42	78	5	104	39	15	25	18	1.91
3658060--3658442	164	2.3	165	86	4	522	28	12	9	49	1.71
3658654--3658685	7	4.4	7	96	4	55	12	0	3	84	0.74
3660655--3661766	155	7.1	153	76	8	801	23	16	19	39	1.92
3669449--3669500	21	2.4	21	77	3	59	23	9	3	63	1.41
3674987--3675019	17	1.9	17	93	0	57	72	0	21	6	1.05
3675302--3675555	112	2.3	111	81	2	285	32	15	12	38	1.86
3675995--3676104	44	2.5	45	75	7	109	21	19	13	45	1.84
3676837--3676924	36	2.5	36	84	1	106	20	27	12	39	1.88
3676916--3677028	48	2.4	48	86	3	147	19	23	14	43	1.87
3677010--3677494	44	11.1	43	77	10	337	21	22	15	41	1.90
3677017--3677415	43	9.2	43	76	11	226	20	22	15	41	1.89
3677197--3677495	87	3.4	88	75	7	286	21	22	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677621--3678723	43	25.7	43	77	5	865	19	29	16	34	1.94
3678716--3678759	22	2.0	22	90	0	70	15	29	18	36	1.92
3678738--3679063	128	2.6	128	79	2	327	20	29	15	33	1.94
3678775--3679045	85	3.2	86	78	6	246	21	29	15	33	1.94
3678738--3679057	43	7.6	43	77	5	267	20	29	16	34	1.94
3679361--3679675	167	1.9	165	83	2	407	19	24	17	38	1.92
3679486--3679754	83	3.3	82	73	8	199	18	25	17	37	1.93
3679526--3679623	41	2.3	43	79	8	105	17	24	22	35	1.95
3679651--3679754	40	2.5	41	75	7	104	20	25	15	38	1.92
3679546--3679781	41	5.7	42	70	9	137	18	26	19	35	1.95
3681084--3681824	165	4.5	166	83	5	779	29	12	6	51	1.65
3681224--3681824	333	1.8	327	84	5	816	29	12	6	51	1.64
3681241--3681909	333	2.0	329	80	8	752	28	12	7	51	1.67
3687209--3687234	13	2.0	13	100	0	52	30	15	15	38	1.88
3687222--3687257	17	2.1	17	94	0	63	30	22	13	33	1.93
3687590--3688513	156	6.0	154	76	7	705	25	17	19	37	1.93
3688967--3689258	52	5.7	51	72	8	202	32	15	25	27	1.95
3688971--3689258	101	2.8	101	78	4	276	32	15	25	27	1.96
3689213--3689298	43	2.0	43	88	0	127	33	17	23	25	1.96
3689310--3689537	28	8.0	27	77	9	84	20	19	28	32	1.97
3689320--3689730	29	14.5	29	81	10	401	22	17	27	31	1.97
3689320--3689730	57	7.3	59	82	10	425	22	17	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3689320--3689731	85	4.9	84	81	7	433	22	17	27	31	1.97
3691160--3691213	18	3.1	16	84	10	63	1	5	7	85	0.81
3691160--3691214	24	2.2	25	87	9	78	1	5	9	83	0.86
3695982--3696031	21	2.4	21	86	0	64	22	32	14	32	1.93
3697602--3697626	13	1.9	13	100	0	50	36	16	16	32	1.90
3697584--3697647	33	2.0	33	90	3	103	39	17	15	28	1.90
3699542--3699863	155	2.1	154	88	2	486	24	16	18	40	1.91
3701474--3701502	12	2.3	13	94	5	51	31	17	10	41	1.83
3703806--3704028	79	2.8	79	81	0	257	27	25	14	32	1.95
3703983--3704079	51	1.9	51	89	0	149	31	21	9	37	1.85
3703885--3704291	130	3.1	128	79	5	424	28	24	13	33	1.93
3704094--3704205	51	2.2	53	87	4	158	25	22	15	36	1.93
3704146--3704365	79	2.8	78	79	10	216	27	23	14	34	1.94
3703885--3704269	131	2.9	130	81	7	413	27	24	13	34	1.93
3716753--3716797	8	5.6	8	79	10	56	75	8	0	15	1.03
3716752--3716805	16	3.4	16	87	2	83	77	9	0	12	0.98
3716793--3716843	10	4.5	11	76	16	50	84	7	7	0	0.78
3717914--3718159	55	4.5	54	88	3	332	29	28	19	21	1.98
3717803--3717994	94	2.0	97	86	10	268	24	29	17	28	1.97
3717976--3718367	211	1.9	204	84	6	520	27	27	19	25	1.99
3718173--3718552	122	3.2	115	78	6	388	26	24	20	28	1.99
3718204--3718565	61	6.0	60	78	10	321	25	24	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718529--3718673	45	3.5	40	79	14	154	21	28	14	35	1.93
3719140--3719169	13	2.3	13	94	0	51	30	13	13	43	1.82
3721517--3721738	79	2.8	80	81	7	265	29	24	13	31	1.94
3721675--3721794	51	2.4	51	91	0	195	30	29	11	28	1.92
3721778--3721850	28	2.6	28	89	4	112	23	32	19	24	1.97
3721648--3721958	158	2.0	158	82	3	376	27	26	13	32	1.94
3721833--3721952	51	2.4	51	88	2	179	26	25	15	32	1.95
3721885--3722103	79	2.8	78	79	11	257	27	22	13	36	1.92
3727297--3727337	21	2.0	21	90	4	66	19	12	17	51	1.76
3728561--3728611	27	2.0	26	85	11	70	25	33	15	25	1.95
3736781--3736886	19	5.8	19	73	20	84	33	17	14	33	1.90
3736783--3736886	52	2.0	52	92	0	172	34	17	14	33	1.90
3736806--3736874	33	2.2	32	87	10	97	34	18	14	31	1.91
3736782--3736886	20	5.7	20	73	20	79	34	18	14	33	1.91
3744333--3744449	40	2.9	40	100	0	234	49	7	17	25	1.73
3749457--3749503	16	3.0	15	85	11	67	80	8	0	10	0.89
3756932--3757010	20	3.8	20	79	12	88	39	10	15	35	1.81
3757996--3758139	70	2.1	70	86	2	200	41	20	11	27	1.85
3759282--3759319	11	3.2	12	85	14	60	34	15	13	36	1.87
3759283--3759319	13	3.0	13	88	11	60	32	16	13	37	1.87
3759283--3759340	20	2.7	21	86	10	73	29	18	13	37	1.90
3760874--3761012	69	2.0	70	94	1	244	38	10	20	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3762162--3762203	21	2.0	21	100	0	84	38	14	14	33	1.86
3762848--3762885	15	2.6	14	84	16	51	0	10	18	71	1.14
3763619--3763672	20	2.7	20	85	0	81	7	20	31	40	1.80
3763989--3764028	20	2.0	20	95	0	71	5	27	15	52	1.63
3764149--3764203	16	3.4	16	83	14	60	21	0	1	76	0.88
3772804--3772829	13	2.0	13	100	0	52	38	15	15	30	1.88
3772786--3772848	32	2.0	32	87	6	92	39	15	15	28	1.89
3775021--3775065	21	2.1	21	84	8	56	53	4	20	22	1.63
3776868--3776898	15	2.1	15	93	0	53	48	16	22	12	1.80
3778977--3779028	13	4.0	13	100	0	104	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29