genome.fa.s247.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  29  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4579433--4579563	51	2.5	51	81	9	156	31	9	26	32	1.89
4579164--4579560	210	1.9	211	87	2	584	30	12	27	29	1.92
4582378--4582416	15	2.5	16	95	4	71	10	17	7	64	1.48
4585220--4585685	158	2.9	157	76	5	384	39	13	17	30	1.88
4587172--4587225	20	2.7	20	88	5	74	31	11	18	38	1.86
4589432--4590062	317	2.0	317	93	1	1068	42	19	10	27	1.84
4590586--4590621	10	3.5	10	88	7	54	0	19	0	80	0.71
4590578--4590626	11	4.6	11	87	7	66	0	22	0	77	0.77
4591183--4591631	164	2.8	155	81	11	418	53	8	8	29	1.62
4591254--4591631	164	2.4	156	84	9	457	54	8	7	29	1.58
4591317--4591660	164	2.1	162	89	3	521	51	8	9	31	1.63
4592252--4592305	27	2.0	27	100	0	108	44	18	14	22	1.86
4592492--4592525	2	17.0	2	100	0	68	50	0	0	50	1.00
4592687--4592828	60	2.5	60	77	10	152	44	14	19	21	1.86
4592949--4593279	45	7.4	45	79	5	292	41	14	23	20	1.89
4592949--4593279	135	2.5	133	78	6	333	41	14	23	20	1.89
4594036--4594404	154	2.4	154	85	4	503	37	21	17	24	1.94
4594039--4594485	154	2.9	153	80	6	499	38	21	16	24	1.93
4595429--4595713	157	1.8	156	81	4	360	41	20	10	27	1.85
4597884--4597908	13	1.9	13	100	0	50	56	36	0	8	1.29
4599669--4599721	19	2.7	20	83	11	65	26	13	15	45	1.82
4603101--4603169	33	2.1	33	81	5	77	23	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4607716--4608366	155	4.2	153	76	7	503	38	19	17	24	1.93
4608536--4608944	172	2.4	172	86	3	580	43	12	10	33	1.77
4614146--4614191	12	4.1	11	81	13	58	80	0	0	19	0.71
4614150--4614196	8	5.9	8	80	9	60	80	0	0	19	0.70
4614146--4614205	25	2.5	24	91	5	95	76	0	1	21	0.87
4628975--4629204	114	2.0	114	99	0	451	31	14	24	29	1.95
4634594--4634792	55	3.5	55	80	12	240	26	27	21	25	1.99
4634714--4634900	93	2.0	93	97	0	356	24	33	16	26	1.96
4634503--4635099	305	2.0	296	88	2	879	26	29	18	25	1.98
4634906--4635215	55	5.4	55	77	11	264	27	28	20	23	1.99
4635036--4635221	61	3.0	61	83	3	205	25	26	18	29	1.98
4635187--4635336	45	3.6	41	76	15	130	21	26	15	37	1.93
4635187--4635356	45	4.2	38	74	17	116	18	25	14	41	1.88
4635187--4635358	86	2.0	83	81	11	199	18	25	13	41	1.88
4636089--4636162	20	3.7	19	87	7	103	28	16	13	41	1.86
4638459--4638574	51	2.3	50	80	4	133	28	26	11	33	1.91
4638561--4638632	28	2.6	28	86	0	99	27	30	15	26	1.96
4638666--4638739	28	2.7	27	82	16	89	21	28	24	25	1.99
4638508--4638789	107	2.6	106	76	6	307	26	25	15	31	1.96
4640980--4641025	16	2.8	16	83	3	56	80	0	10	8	0.91
4642456--4642612	44	3.6	44	81	6	176	21	22	15	40	1.91
4642716--4643181	42	11.0	42	73	5	217	18	28	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642807--4643137	84	3.9	84	75	7	262	18	28	17	35	1.94
4643757--4643810	8	6.9	8	85	4	74	83	1	1	12	0.81
4643761--4643796	15	2.4	15	95	0	63	88	2	0	8	0.59
4643757--4643810	23	2.3	24	90	3	83	83	1	1	12	0.81
4644948--4644978	16	1.9	16	93	0	53	58	35	6	0	1.24
4646635--4646706	30	2.4	30	78	15	78	33	11	9	45	1.72
4649016--4649059	11	3.9	11	82	5	52	0	25	0	75	0.81
4649568--4649924	166	2.1	165	84	4	466	47	9	11	31	1.72
4649570--4650097	166	3.2	165	79	7	430	49	9	10	30	1.69
4654360--4654418	28	2.0	30	90	9	95	20	10	38	30	1.86
4654403--4654574	52	3.3	51	87	7	222	41	9	22	26	1.85
4654499--4654925	79	5.4	81	79	6	421	40	11	20	28	1.86
4654509--4654925	159	2.6	158	82	6	531	39	11	19	29	1.86
4658681--4658828	42	3.5	42	81	4	156	39	18	23	18	1.92
4658891--4658977	42	2.1	42	95	0	156	36	13	31	18	1.90
4658917--4659008	42	2.2	42	84	3	114	36	17	30	15	1.91
4658874--4659221	126	2.8	125	76	4	290	39	15	27	17	1.90
4659018--4659175	84	1.9	84	82	2	201	40	13	27	17	1.88
4659018--4659234	42	5.2	40	78	8	168	40	14	28	16	1.88
4659312--4659465	44	3.5	44	76	11	145	36	16	26	20	1.94
4659312--4659687	88	4.3	88	80	2	362	38	16	25	19	1.92
4659359--4659687	44	7.5	44	69	7	200	38	16	25	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660067--4660233	90	1.9	90	88	0	253	26	14	29	28	1.95
4661010--4661057	9	5.6	8	81	13	60	0	0	14	85	0.60
4661015--4661057	18	2.3	18	88	4	68	0	0	13	86	0.58
4661010--4661056	18	2.7	17	90	3	67	0	0	12	87	0.55
4664092--4664132	20	2.0	20	100	0	82	56	14	14	14	1.69
4667776--4668951	159	7.5	155	70	11	375	38	11	17	31	1.86
4667929--4668289	158	2.3	157	80	6	392	39	10	17	33	1.83
4669725--4669779	20	2.8	20	91	5	85	27	14	14	43	1.84
4672110--4672265	65	2.4	64	81	8	165	27	20	13	38	1.90
4672078--4672839	62	12.1	64	76	9	572	26	22	16	34	1.95
4674042--4674106	19	3.8	18	75	24	77	32	12	16	38	1.86
4674044--4674119	32	2.4	32	95	0	134	32	14	17	35	1.90
4674063--4674120	13	4.0	13	74	23	53	34	15	15	34	1.89
4674192--4674320	52	2.5	52	87	0	195	36	17	17	28	1.93
4676141--4676418	33	8.8	33	75	14	221	34	14	32	19	1.91
4676311--4676384	27	2.7	27	87	0	103	25	16	32	25	1.96
4676407--4676615	30	6.7	30	82	5	202	31	14	30	23	1.94
4676426--4676611	64	3.0	63	86	4	268	32	15	28	24	1.95
4677882--4677946	16	4.3	15	84	5	78	0	1	16	81	0.77
4685209--4685234	13	2.0	13	100	0	52	30	15	15	38	1.88
4685312--4685367	21	2.7	21	100	0	112	35	14	14	35	1.86
4686045--4686183	51	2.7	52	80	4	165	45	11	12	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4686769--4687681	65	14.3	64	77	9	712	35	16	21	26	1.94
4686769--4687681	127	7.1	126	76	11	718	35	16	21	26	1.94
4688827--4689450	155	4.0	152	78	6	508	38	20	16	24	1.92
4689581--4689606	9	2.9	9	100	0	52	46	0	7	46	1.31
4695605--4695950	154	2.2	154	80	8	357	42	15	14	26	1.86
4699311--4699361	20	2.6	20	87	3	68	33	15	15	35	1.90
4699391--4699454	32	2.0	33	84	9	87	35	10	17	35	1.85
4701000--4701029	15	2.0	15	93	0	51	43	0	26	30	1.55
4708000--4708062	13	5.3	13	69	21	57	36	15	15	31	1.90
4708003--4708082	33	2.4	33	97	0	151	36	13	17	32	1.89
4708018--4708083	20	3.7	20	73	26	74	34	13	18	33	1.90
4709694--4709750	21	2.7	21	94	0	96	35	10	17	36	1.84
4709861--4709927	33	2.0	33	82	0	80	28	13	13	44	1.81
4712376--4712451	27	2.8	28	81	2	91	25	32	19	22	1.97
4712434--4712657	53	4.3	51	79	6	198	30	23	11	34	1.90
4715676--4715737	20	3.1	20	90	0	97	43	9	16	30	1.80
4718272--4718439	78	2.2	78	79	6	182	26	25	11	36	1.90
4718295--4718438	78	1.9	77	84	7	193	26	26	11	35	1.91
4718367--4718583	81	2.8	73	80	15	187	29	28	9	32	1.89
4718441--4718600	81	2.0	80	85	10	220	31	29	10	29	1.89
4726708--4726746	20	2.0	20	100	0	78	30	10	23	35	1.88
4736246--4736308	24	2.6	25	85	7	85	30	30	7	31	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29

The End!