genome.fa.s247.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  4  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410397--410433	17	2.2	17	95	0	65	51	13	0	35	1.41
411015--411072	27	2.2	25	84	9	71	46	0	1	51	1.11
411656--411713	10	5.8	10	72	22	50	60	1	0	37	1.07
412443--412548	34	3.1	33	82	8	133	26	1	21	50	1.59
412913--412949	19	1.9	19	88	0	56	32	24	16	27	1.96
416809--417037	114	2.0	114	98	0	440	37	14	19	28	1.91
417127--417239	34	3.3	34	86	0	154	24	5	26	43	1.75
417477--417534	20	2.8	21	81	7	64	29	0	0	70	0.87
417692--417725	4	8.5	4	100	0	68	50	26	0	23	1.50
417863--417916	22	2.5	21	76	8	54	48	0	1	50	1.11
417913--417940	7	4.0	7	100	0	56	42	0	0	57	0.99
417936--417970	18	1.9	18	88	0	52	45	0	2	51	1.16
418290--418359	35	2.1	34	84	10	92	34	2	0	62	1.10
418606--418655	3	16.7	3	100	0	100	34	0	0	66	0.92
418895--418936	21	2.0	21	86	9	59	66	0	0	33	0.92
418905--418940	15	2.5	14	86	8	54	66	0	0	33	0.92
418896--418974	29	2.7	30	69	7	74	56	0	0	43	0.99
419366--419396	2	15.5	2	93	0	53	48	3	0	48	1.17
420012--420059	21	2.3	21	88	0	69	54	0	0	45	0.99
421121--421155	16	2.1	17	94	5	63	57	0	2	40	1.14
423726--423806	40	2.0	40	100	0	162	40	12	24	22	1.88
428256--428285	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428114--428464	174	2.0	175	95	1	632	37	11	17	33	1.86
428430--428476	2	23.5	2	82	0	58	46	4	4	44	1.42
428429--428478	16	3.1	16	82	0	64	46	8	4	42	1.52
438361--438428	23	3.0	22	76	18	68	38	0	5	55	1.24
438440--438483	18	2.4	19	81	11	56	56	2	0	40	1.11
438439--438468	15	2.1	14	93	6	51	53	0	0	46	1.00
438626--438658	3	11.3	3	93	6	59	69	0	0	30	0.88
438868--438922	19	2.8	20	81	18	62	40	1	0	58	1.09
438868--438922	20	2.8	19	82	17	60	40	1	0	58	1.09
439005--439038	13	2.6	13	85	0	50	58	0	2	38	1.13
439345--439412	26	2.5	27	83	4	75	42	1	4	51	1.31
439565--439609	24	1.9	24	86	4	65	62	0	0	37	0.96
439495--439659	77	2.1	77	83	8	203	55	1	1	40	1.21
439905--439981	23	3.3	23	68	26	63	32	0	7	59	1.26
439994--440164	70	2.4	70	82	4	200	34	0	11	53	1.42
440176--440206	13	2.3	14	94	5	55	32	0	16	51	1.44
440192--440562	74	5.1	74	82	5	423	30	2	12	54	1.49
440191--440566	148	2.6	146	84	4	472	30	2	13	54	1.50
440566--440930	71	5.1	71	78	6	344	30	3	14	52	1.58
440588--440930	144	2.4	144	80	9	389	30	3	14	51	1.59
440889--440952	33	1.9	33	90	6	103	32	1	14	51	1.51
444960--445010	16	3.2	16	80	2	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445130--445253	32	3.8	32	73	14	103	39	0	0	60	0.97
445120--445233	10	13.0	9	70	21	73	36	0	0	62	1.02
445126--445232	34	3.1	34	81	11	105	37	0	0	62	0.95
445126--445242	25	4.5	25	76	10	103	37	0	0	62	0.96
445130--445241	19	5.8	19	71	21	74	37	0	0	62	0.95
445116--445245	35	4.1	30	69	26	83	37	0	0	61	1.02
445142--445253	19	5.8	20	75	15	85	40	0	0	59	0.97
447332--447384	22	2.5	21	82	11	65	41	0	0	58	0.98
447338--447368	16	2.0	15	93	6	53	35	0	0	64	0.94
449096--449123	2	14.0	2	100	0	56	50	0	0	50	1.00
450915--450972	30	2.0	29	86	10	82	62	1	1	34	1.16
453977--454002	1	26.0	1	100	0	52	0	0	0	100	0.00
454666--454713	3	16.0	3	100	0	96	33	0	0	66	0.92
455446--455478	5	6.8	5	86	6	50	21	42	0	36	1.53
455449--455475	14	1.9	14	100	0	54	22	48	0	29	1.51
458672--458724	21	2.5	21	81	6	63	33	3	26	35	1.75
458694--458759	22	3.1	21	88	2	87	42	1	16	39	1.58
458710--458760	22	2.3	22	96	0	93	45	0	11	43	1.40
459157--459189	2	16.5	2	100	0	66	48	0	0	51	1.00
459518--459542	13	1.9	13	100	0	50	36	16	16	32	1.90
459498--459564	33	2.0	33	88	0	98	32	11	14	40	1.83
459605--459629	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459638--459809	52	3.5	49	82	13	230	33	20	18	27	1.96
459692--459780	43	2.1	43	97	0	169	32	23	17	25	1.97
463419--463476	20	2.9	20	85	10	75	34	0	3	62	1.12
463351--463431	2	43.5	2	75	14	66	48	0	0	51	1.00
463417--463475	23	2.7	21	75	17	57	35	0	3	61	1.13
463499--463549	23	2.3	23	83	6	61	56	0	0	43	0.99
463587--463630	15	2.9	15	93	3	70	34	0	0	65	0.93
463587--463629	5	8.4	5	81	2	50	34	0	0	65	0.93
476647--476685	15	2.6	15	79	0	51	51	12	2	33	1.54
478784--478827	17	2.4	19	88	7	65	47	0	0	52	1.00
478854--478906	17	3.0	18	81	10	65	43	0	0	56	0.99
478845--478902	18	3.4	17	79	11	66	39	0	0	60	0.97
478853--478910	19	3.2	18	78	11	64	43	0	0	56	0.99
479462--479486	13	1.9	13	100	0	50	68	0	0	32	0.90
479462--479530	30	2.3	31	80	16	83	65	0	0	34	0.93
479471--479506	17	2.1	18	94	5	65	69	0	0	30	0.89
479487--479554	20	3.1	21	73	21	59	61	0	0	38	0.96
479467--479551	29	3.1	28	79	17	81	67	0	0	32	0.91
479466--479552	18	4.8	18	71	14	54	66	0	0	33	0.92
479546--479596	13	3.5	15	79	15	63	37	0	0	62	0.95
479501--479552	26	2.0	26	88	7	79	63	0	0	36	0.95
479545--479578	16	2.2	16	89	5	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480270--480339	32	2.2	32	84	5	88	45	5	2	45	1.41
480470--480538	33	2.1	34	94	2	122	44	4	0	50	1.21
480858--480889	8	3.8	9	88	12	50	59	0	0	40	0.97
480829--480889	17	3.6	17	77	16	65	57	1	0	40	1.08
480901--480968	14	5.1	14	74	22	67	38	0	0	61	0.96
481227--481270	22	2.0	22	86	0	61	54	2	4	38	1.33
483298--483355	24	2.4	23	77	11	62	36	0	5	58	1.20
485966--486034	16	4.5	15	75	10	59	36	0	2	60	1.11
485965--486036	23	3.1	23	73	15	76	36	0	2	61	1.11
490342--490419	18	4.5	18	72	23	60	43	1	2	52	1.23
490330--490391	18	3.3	18	77	18	65	40	3	0	56	1.15
490436--490466	15	2.1	15	93	0	53	54	0	0	45	0.99
490912--490959	21	2.4	21	86	6	64	41	0	0	58	0.98
490887--490962	28	2.7	29	80	14	86	39	0	0	60	0.97
490923--491007	19	4.5	18	75	19	68	36	1	1	61	1.12
490925--491008	21	4.3	19	75	20	59	38	1	1	59	1.13
490940--491016	37	2.1	37	80	9	86	37	1	1	59	1.14
491293--491317	13	1.9	13	100	0	50	20	0	0	80	0.72
491595--491781	61	3.0	63	71	21	174	47	4	8	39	1.55
491614--491695	19	4.2	19	68	18	60	51	4	6	37	1.48
493365--493407	17	2.4	18	78	17	54	30	0	2	67	1.03
493395--493556	73	2.2	74	80	5	184	42	2	9	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493727--493803	37	2.1	37	95	0	136	29	2	6	61	1.35
494672--494745	36	2.0	37	82	15	91	50	1	1	47	1.18
494872--494900	5	6.0	5	92	8	51	20	0	0	79	0.74
495182--495206	5	5.0	5	100	0	50	20	0	40	40	1.52
495705--495752	15	3.3	15	77	5	55	27	0	0	72	0.84
497285--497330	24	1.9	24	90	0	74	45	2	10	41	1.51
499915--499954	17	2.4	17	86	0	53	0	22	2	75	0.93
500042--500083	21	2.2	19	87	12	59	4	2	11	80	0.95
501604--501644	2	20.5	2	100	0	82	48	0	0	51	1.00
504240--504274	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29