genome.fa.s247.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  19  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2856929--2856998	33	2.1	35	94	5	126	25	37	17	20	1.94
2856760--2856977	104	2.1	102	80	8	235	22	34	13	29	1.92
2856998--2857601	49	12.7	49	84	9	756	25	25	18	31	1.97
2856998--2857601	92	6.4	97	87	5	748	25	25	18	31	1.97
2857680--2857825	49	2.9	49	89	3	220	24	26	16	32	1.96
2857474--2857953	224	2.2	214	86	6	662	24	24	15	35	1.95
2858608--2858632	13	1.9	13	100	0	50	32	16	16	36	1.90
2858641--2858764	52	2.4	52	94	1	214	35	18	17	28	1.94
2860890--2860960	27	2.6	27	97	0	133	25	43	19	11	1.84
2862079--2862112	12	2.8	12	86	0	50	26	2	32	38	1.71
2862666--2862718	20	2.7	20	90	0	79	33	13	15	37	1.86
2862500--2862878	180	2.1	180	97	0	713	36	14	12	35	1.85
2862595--2862878	90	3.2	90	68	9	263	35	14	13	36	1.85
2865097--2865140	21	2.1	21	82	0	52	38	6	18	36	1.77
2868284--2868309	13	2.0	13	100	0	52	30	15	15	38	1.88
2872942--2872976	15	2.2	16	90	5	54	11	20	14	54	1.70
2874779--2874823	21	2.1	21	84	8	56	22	20	4	53	1.63
2881119--2881156	10	3.7	10	89	6	58	0	15	0	84	0.63
2881119--2881163	21	2.1	21	87	0	63	0	15	0	84	0.62
2881119--2881163	11	4.2	11	88	5	65	0	15	0	84	0.62
2884232--2884271	20	2.0	20	85	4	55	47	0	0	52	1.00
2884233--2884296	34	1.9	32	81	12	76	42	0	1	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2884549--2884593	22	2.0	24	86	8	67	57	0	2	40	1.11
2886149--2886201	17	3.1	17	94	5	97	33	11	30	24	1.90
2896908--2896939	2	16.0	2	100	0	64	50	0	0	50	1.00
2898228--2898258	3	10.3	3	100	0	62	67	0	0	32	0.91
2899063--2899098	2	18.0	2	100	0	72	50	0	0	50	1.00
2899239--2899286	21	2.2	22	85	10	64	47	0	2	50	1.12
2900114--2900170	29	2.0	28	80	12	64	68	5	3	22	1.25
2901246--2901328	25	3.2	25	65	15	69	37	12	2	48	1.54
2901224--2901330	53	2.0	53	100	0	214	38	13	3	44	1.61
2902038--2902067	2	15.0	2	100	0	60	50	0	0	50	1.00
2903414--2903442	15	1.9	15	100	0	58	86	0	13	0	0.58
2904666--2904720	28	2.0	28	92	0	92	23	9	16	50	1.73
2904725--2904770	24	1.9	24	95	0	83	19	6	28	45	1.75
2909232--2909286	28	2.0	28	96	0	101	20	10	20	49	1.78
2909291--2909336	24	1.9	24	95	0	83	19	6	28	45	1.75
2911185--2911214	15	2.0	15	100	0	60	40	0	13	46	1.43
2912091--2912120	2	15.0	2	100	0	60	50	0	0	50	1.00
2912376--2912413	19	2.0	20	89	5	60	39	0	10	50	1.37
2913806--2913838	8	4.1	8	100	0	66	87	0	0	12	0.53
2914313--2914352	20	2.0	20	85	9	55	12	25	42	20	1.86
2916115--2916183	27	2.6	27	86	4	77	27	27	18	26	1.98
2918754--2918783	13	2.3	13	94	0	51	33	16	10	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2918704--2918832	62	2.1	63	92	1	215	27	17	14	39	1.89
2920465--2920532	19	3.9	19	78	21	85	35	11	14	38	1.83
2920467--2920529	32	2.0	32	96	0	117	34	12	15	36	1.86
2920486--2920510	13	1.9	13	100	0	50	36	16	16	32	1.90
2920572--2920597	13	2.0	13	100	0	52	30	15	15	38	1.88
2920552--2920618	33	2.0	33	88	0	98	25	14	16	43	1.86
2922958--2923299	52	6.5	53	69	17	178	29	26	12	31	1.93
2923072--2923147	27	2.7	29	90	6	113	25	34	19	21	1.96
2923283--2923359	28	2.8	28	85	0	91	23	32	19	24	1.97
2922965--2923364	212	1.9	212	88	3	608	28	27	13	31	1.94
2935840--2935879	15	2.8	14	88	7	62	82	7	10	0	0.84
2935857--2935901	12	3.7	11	85	14	54	84	8	6	0	0.78
2936885--2937910	55	18.3	55	86	6	1305	27	28	20	23	1.99
2936885--2937855	171	5.7	171	91	3	1440	27	28	20	23	1.99
2938705--2938772	19	3.9	19	74	21	76	36	11	13	38	1.81
2938707--2938769	32	2.0	32	93	0	108	36	12	14	36	1.84
2938812--2938837	13	2.0	13	100	0	52	30	15	15	38	1.88
2938792--2938858	33	2.0	33	88	0	98	25	14	16	43	1.86
2941198--2941539	52	6.5	53	70	16	178	29	26	11	31	1.92
2941312--2941395	27	3.0	28	85	3	107	23	32	19	25	1.97
2941523--2941594	28	2.6	28	86	0	90	25	30	19	25	1.98
2941205--2941594	212	1.8	212	90	3	624	28	26	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2943647--2943766	51	2.4	51	82	0	132	28	24	14	33	1.94
2943568--2943822	130	2.0	130	83	9	324	27	25	14	33	1.94
2954699--2954826	51	2.5	52	96	1	231	29	17	17	35	1.93
2954699--2954846	51	2.9	50	90	5	217	31	16	18	33	1.93
2954835--2954859	13	1.9	13	100	0	50	36	16	16	32	1.90
2954921--2954945	13	1.9	13	100	0	50	32	16	16	36	1.90
2954900--2954965	32	2.0	33	94	2	116	36	15	12	36	1.84
2960553--2960956	61	6.5	62	84	4	476	24	24	18	32	1.97
2960543--2960935	124	3.2	122	85	5	459	25	25	18	30	1.98
2960949--2961187	41	5.7	41	72	12	171	19	25	12	42	1.87
2960939--2961194	83	3.1	82	75	14	231	19	24	14	42	1.88
2961733--2961819	20	3.8	20	71	25	75	24	14	17	43	1.86
2961751--2961879	62	2.1	63	86	1	179	28	17	14	39	1.89
2962841--2962894	20	2.7	21	80	8	67	37	18	11	33	1.86
2962924--2962978	19	2.8	19	91	2	83	36	16	16	30	1.91
2962963--2962989	13	2.1	13	100	0	54	40	14	14	29	1.86
2963531--2963579	22	2.3	22	85	3	64	26	28	4	40	1.74
2964047--2964072	13	2.0	13	100	0	52	38	15	15	30	1.88
2964029--2964092	32	2.0	33	90	3	103	42	15	14	28	1.86
2966678--2966730	12	4.2	12	92	2	79	43	16	7	32	1.76
2966678--2966730	25	2.1	25	89	6	81	43	16	7	32	1.76
2972919--2972949	13	2.4	13	94	0	53	35	6	16	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973015--2973041	13	2.1	13	100	0	54	40	14	14	29	1.86
2975825--2975878	20	2.7	20	97	0	99	25	14	12	46	1.81
2978325--2978396	28	2.6	28	86	10	103	23	30	19	26	1.98
2978431--2978506	28	2.7	28	81	0	80	21	34	21	23	1.97
2978276--2978560	109	2.6	106	77	6	331	26	26	14	32	1.95
2978629--2978812	79	2.3	79	80	5	219	28	24	14	32	1.95
2980883--2980913	12	2.6	12	94	0	53	19	0	6	74	1.03
2991221--2991256	8	4.4	8	93	6	63	86	0	13	0	0.58
2992287--2992363	39	2.0	39	84	5	102	23	33	12	29	1.92
2992218--2992408	99	1.9	100	87	3	278	25	29	15	29	1.96
2992326--2992970	61	10.7	61	83	6	658	25	26	18	29	1.98
2992669--2992901	115	2.0	110	79	11	236	27	26	19	26	1.99
2992960--2993096	42	3.2	42	76	18	138	19	27	10	42	1.85
2993823--2993909	20	4.3	20	87	8	115	28	16	12	42	1.84
2993823--2993909	40	2.2	40	93	0	147	28	16	12	42	1.84
2997366--2997803	27	16.0	28	80	8	417	25	26	13	35	1.92
2997366--2997806	82	5.4	82	82	5	466	25	25	13	35	1.92
2997812--2998321	28	18.2	28	80	2	436	29	28	16	25	1.97
2997819--2998191	86	4.4	85	79	4	268	28	28	17	25	1.97
2997812--2998408	28	21.0	27	77	7	370	29	28	16	24	1.97
2998283--2998346	30	2.2	28	86	5	83	29	32	14	23	1.94
2998340--2998423	30	2.7	32	77	7	109	32	29	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001284--3001337	27	2.0	27	85	0	72	29	31	12	25	1.93
3002588--3002621	6	5.7	6	100	0	68	32	0	0	67	0.91
3002951--3003030	42	1.9	41	82	2	97	36	15	15	33	1.88
3003129--3003216	16	5.5	16	75	14	67	46	4	10	38	1.58
3003549--3003581	17	1.9	17	88	11	50	30	3	12	54	1.52
3007981--3008015	2	17.5	2	93	0	61	48	0	2	48	1.16
3008285--3008369	40	2.1	40	95	0	152	41	7	2	49	1.43
3011703--3011748	20	2.3	20	88	0	65	36	15	10	36	1.82
3016143--3016199	19	2.9	19	84	2	78	31	12	17	38	1.87
3016229--3016281	20	2.7	20	88	5	72	33	13	18	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29