genome.fa.s247.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Length:  4737410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  10  of  29  ( 3470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1314418--1314530	38	2.9	39	82	13	119	56	0	0	41	1.11
1314404--1314475	26	2.7	25	89	8	99	62	0	2	34	1.10
1314472--1314532	14	4.4	14	71	8	52	50	1	0	47	1.10
1314404--1314494	28	3.4	27	78	13	98	60	0	2	37	1.09
1314425--1314540	11	10.7	11	73	15	73	56	0	0	41	1.11
1314452--1314550	42	2.5	40	82	9	130	55	1	0	43	1.06
1314499--1314552	28	2.0	26	85	7	72	50	0	0	50	1.00
1315547--1315596	24	2.0	25	85	11	68	56	2	4	38	1.30
1315711--1315770	29	2.1	29	83	0	75	45	5	3	46	1.41
1316383--1316454	37	2.0	36	84	13	94	36	0	0	63	0.94
1317380--1317408	13	2.1	14	93	6	51	62	0	0	37	0.96
1317384--1317428	21	2.1	22	88	12	67	55	2	0	42	1.12
1317415--1317527	52	2.2	52	88	3	174	53	7	2	36	1.45
1318766--1318804	20	1.9	21	89	5	62	46	0	0	53	1.00
1323347--1323392	2	23.0	2	95	0	83	47	0	0	52	1.00
1324002--1324041	20	2.0	20	85	9	55	37	20	15	27	1.92
1324201--1324242	13	3.2	13	93	0	75	28	16	23	30	1.96
1324298--1324351	20	2.7	20	100	0	108	33	11	14	40	1.82
1328968--1329116	52	2.9	51	89	4	235	30	17	18	32	1.94
1329105--1329129	13	1.9	13	100	0	50	36	16	16	32	1.90
1329168--1329225	20	3.0	20	84	2	73	46	13	10	29	1.77
1329922--1329976	21	2.7	20	80	8	56	56	0	21	21	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1333779--1333948	52	3.3	51	82	2	187	31	12	27	28	1.93
1333814--1333948	51	2.6	52	84	1	173	33	13	26	26	1.93
1333882--1334059	80	2.2	79	87	3	241	29	16	29	25	1.97
1334012--1334089	27	2.9	27	88	5	113	24	19	33	23	1.97
1334089--1334186	51	1.9	51	84	12	130	36	10	21	31	1.87
1336547--1336572	13	2.0	13	100	0	52	38	15	15	30	1.88
1336526--1336592	33	2.0	33	88	0	98	43	16	14	25	1.86
1336612--1336679	19	3.9	18	76	23	83	38	14	11	35	1.83
1336634--1336658	13	1.9	13	100	0	50	32	16	16	36	1.90
1336615--1336677	32	2.0	32	96	0	117	36	15	12	34	1.86
1337588--1337638	13	3.9	13	89	0	84	31	15	21	31	1.95
1337699--1337752	20	2.7	20	100	0	108	33	11	14	40	1.82
1348133--1348228	33	2.9	33	80	7	106	42	12	14	30	1.83
1348319--1348369	23	2.1	24	85	7	68	37	5	9	47	1.61
1348333--1348377	23	1.9	23	86	4	63	42	8	8	40	1.67
1356349--1356387	19	2.1	19	95	0	69	25	30	0	43	1.55
1356378--1356443	35	1.9	34	96	3	123	31	22	12	33	1.91
1357076--1357157	23	3.5	22	75	14	58	41	6	6	46	1.53
1358291--1358336	23	2.0	24	83	12	60	65	0	0	34	0.93
1357803--1361601	754	5.0	761	88	2	5436	39	13	11	35	1.81
1361321--1361367	24	2.0	24	83	8	60	65	0	0	34	0.93
1362619--1362679	26	2.5	24	76	7	61	42	1	1	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362750--1362792	21	2.0	21	86	9	59	41	0	2	55	1.12
1365624--1365669	22	2.1	22	84	8	58	63	0	4	32	1.14
1370003--1370066	23	2.6	25	72	13	62	6	18	0	75	1.01
1369975--1370043	30	2.3	30	80	5	77	5	15	0	78	0.94
1370240--1370277	19	2.0	19	90	10	60	5	34	0	60	1.19
1370241--1370283	20	2.2	19	84	12	52	6	30	0	62	1.21
1371518--1371667	5	30.2	5	64	17	55	40	0	0	58	1.08
1371553--1371612	15	3.8	16	76	24	65	45	0	1	53	1.10
1371575--1371626	14	3.7	15	82	10	56	42	0	0	57	0.98
1371586--1371668	29	3.0	28	74	19	86	36	0	0	63	0.94
1371786--1371835	22	2.3	22	79	6	57	36	6	0	58	1.23
1372410--1372443	15	2.2	15	89	5	50	2	20	0	76	0.92
1373887--1373926	21	1.9	21	84	0	53	57	0	2	40	1.12
1374560--1374589	2	15.0	2	92	0	51	50	3	0	46	1.18
1374763--1374806	15	2.6	17	82	17	56	56	0	0	43	0.99
1381781--1381819	12	3.1	12	82	13	51	56	2	0	41	1.13
1388959--1388984	9	2.9	9	100	0	52	7	23	0	69	1.14
1393760--1393786	8	3.4	8	100	0	54	77	0	0	22	0.76
1402036--1402107	22	3.3	22	78	0	81	43	12	8	36	1.73
1404107--1404163	22	2.8	20	72	5	51	52	14	3	29	1.58
1404291--1404364	22	3.4	21	71	14	60	43	13	2	40	1.58
1405160--1405229	9	7.6	9	79	16	72	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405163--1405234	22	3.1	23	77	16	78	80	0	1	18	0.78
1405200--1405251	17	2.9	17	76	15	50	82	1	5	9	0.90
1405162--1405251	37	2.4	37	80	7	94	81	1	3	14	0.88
1405160--1405239	8	10.1	8	73	16	69	80	0	2	17	0.83
1405546--1405601	28	2.0	28	96	0	103	44	21	23	10	1.83
1408139--1408627	156	3.1	154	83	4	608	21	16	22	39	1.92
1411790--1412050	141	1.9	141	90	1	416	29	16	25	29	1.96
1421337--1422025	83	8.3	83	89	2	1035	23	24	15	35	1.94
1422007--1423056	83	12.8	83	87	3	1451	23	22	16	37	1.94
1422213--1422345	38	3.3	38	69	20	126	21	21	17	39	1.93
1422722--1423011	38	7.2	38	64	16	116	22	23	16	37	1.94
1422007--1423056	493	2.1	491	88	2	1561	23	22	16	37	1.94
1423038--1423390	83	4.3	83	83	2	422	26	22	15	36	1.93
1421547--1423137	166	9.6	162	79	11	803	23	23	16	36	1.94
1422747--1423350	294	2.1	291	87	1	859	25	23	15	35	1.94
1422904--1423172	128	2.1	128	88	1	387	26	21	15	35	1.94
1423032--1423390	166	2.2	166	87	1	513	26	22	15	36	1.94
1423562--1423754	44	4.4	44	76	6	142	17	25	17	39	1.91
1423570--1423735	44	3.8	44	76	6	158	18	25	16	39	1.91
1424252--1424331	11	8.2	10	76	18	64	77	2	2	17	0.99
1424252--1424320	18	3.8	17	75	22	54	78	2	1	17	0.95
1424250--1424335	37	2.3	36	79	13	95	76	2	2	18	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424650--1424717	28	2.4	28	87	0	100	42	20	23	13	1.87
1426503--1426803	161	1.9	162	85	5	423	38	12	9	39	1.76
1427458--1428051	155	3.8	156	83	5	729	23	17	21	37	1.94
1429878--1429911	2	17.0	2	93	0	59	47	0	0	52	1.00
1443932--1443959	14	2.0	14	100	0	56	28	0	14	57	1.38
1445725--1445795	32	2.2	32	94	0	124	32	11	18	38	1.86
1445744--1445768	13	1.9	13	100	0	50	36	16	16	32	1.90
1445723--1445787	19	3.7	19	73	23	70	32	10	16	40	1.84
1445840--1445864	13	1.9	13	100	0	50	32	16	16	36	1.90
1445873--1446001	52	2.5	52	93	0	231	34	19	18	27	1.95
1451385--1451439	22	2.5	22	96	0	101	61	7	10	20	1.52
1452350--1452424	20	3.8	20	78	3	71	41	13	12	33	1.81
1458012--1458052	19	2.1	20	86	4	57	70	0	12	17	1.16
1459972--1460160	97	1.9	97	90	2	299	34	7	21	36	1.82
1460413--1460475	29	2.2	29	88	5	92	36	15	15	31	1.90
1460413--1460475	15	4.4	14	78	7	72	36	15	15	31	1.90
1460413--1460483	29	2.4	29	83	4	81	32	18	18	30	1.95
1462440--1462491	3	17.3	3	100	0	104	67	0	0	32	0.91
1462442--1462499	6	9.3	7	96	1	58	67	0	0	32	0.91
1464388--1464429	14	2.9	14	85	3	57	33	9	19	38	1.84
1464488--1464526	15	2.7	15	84	4	53	43	20	10	25	1.83
1464979--1465144	83	2.0	82	89	3	253	45	11	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1466646--1466689	19	2.6	16	77	19	52	56	2	9	31	1.43
1466649--1466687	19	2.1	19	95	0	69	56	2	10	30	1.46
1468836--1468869	3	11.3	3	100	0	68	32	0	0	67	0.91
1468907--1469061	78	2.0	78	100	0	310	68	2	10	18	1.31
1470081--1470120	20	2.0	21	85	14	57	57	0	0	42	0.98
1470093--1470130	17	2.2	17	86	9	51	60	2	0	36	1.11
1471682--1471722	12	3.5	12	78	15	50	75	0	7	17	1.02
1471837--1471946	9	12.2	9	70	15	52	70	1	5	22	1.18
1471837--1471884	19	2.5	20	80	10	64	68	0	2	29	1.01
1471837--1471882	10	4.8	10	82	17	53	67	0	2	30	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29