genome.fa.s373.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Length:  3053563

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  13  of  20  ( 2389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823962--1824137	61	2.9	61	75	7	160	18	15	18	47	1.83
1825385--1825477	46	2.0	46	89	0	141	15	22	15	47	1.82
1825176--1825831	41	15.9	41	71	9	303	19	21	13	45	1.85
1825759--1825861	41	2.5	41	80	0	116	20	27	9	42	1.83
1828488--1828806	165	1.9	164	80	6	369	28	12	16	42	1.84
1829592--1829630	19	2.1	19	90	0	60	35	23	12	28	1.91
1830861--1830897	7	5.3	7	90	0	56	56	2	24	16	1.53
1831404--1831471	32	2.1	32	86	0	91	50	7	10	32	1.64
1831416--1831471	17	3.4	17	73	9	62	48	5	12	33	1.64
1832340--1832380	10	3.9	10	87	6	55	53	0	2	43	1.13
1838961--1839014	20	2.7	20	94	0	90	38	20	9	31	1.84
1839226--1839269	22	2.1	21	91	8	72	38	9	6	45	1.63
1839691--1840037	190	1.8	190	92	0	586	26	20	5	47	1.71
1840908--1840960	25	2.1	25	100	0	106	35	7	20	35	1.81
1841127--1841301	79	2.2	80	88	3	255	30	13	28	27	1.94
1841234--1841405	51	3.4	51	84	4	204	30	12	25	30	1.93
1843876--1843901	13	2.0	13	100	0	52	38	15	15	30	1.88
1843888--1843929	21	2.0	21	100	0	84	28	19	9	42	1.82
1843955--1844003	19	2.6	19	96	0	89	38	18	12	30	1.87
1844003--1844155	76	2.0	76	94	0	270	27	14	15	42	1.86
1844139--1844194	21	2.7	21	97	0	103	35	16	10	37	1.83
1846759--1846816	21	2.7	22	81	5	57	18	24	1	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848360--1848422	31	2.1	31	85	8	85	30	22	12	34	1.91
1848822--1848914	36	2.8	35	77	16	108	30	23	12	33	1.92
1848355--1849254	458	2.0	457	94	0	1577	34	15	16	34	1.90
1849347--1849397	20	2.5	20	93	0	84	39	19	9	31	1.84
1853924--1853962	2	19.5	2	94	0	69	51	2	0	46	1.14
1855829--1855902	16	4.4	17	71	19	57	29	1	1	67	1.07
1855867--1855947	38	2.1	39	86	2	110	35	1	0	62	1.03
1855874--1855948	27	2.8	26	75	18	75	37	1	0	61	1.05
1856156--1856216	25	2.4	25	77	2	68	75	1	19	3	1.03
1856336--1856385	12	4.2	12	82	7	66	26	2	2	70	1.09
1856336--1856379	23	1.9	23	90	0	70	25	2	2	70	1.10
1856591--1856623	16	2.0	17	94	5	59	72	0	0	27	0.85
1856725--1856753	15	2.0	15	93	6	51	51	0	0	48	1.00
1857303--1857340	15	2.6	15	83	4	51	42	0	0	57	0.98
1865290--1865327	2	19.5	2	94	5	69	50	0	0	50	1.00
1865566--1865606	14	2.9	14	85	0	55	31	0	0	68	0.90
1868459--1868835	79	4.8	78	82	9	410	31	13	26	28	1.94
1868773--1868888	51	2.3	51	89	0	178	32	12	25	30	1.92
1871871--1871928	21	2.8	21	97	0	107	32	10	18	37	1.85
1871869--1871947	21	3.8	20	78	8	77	36	13	16	32	1.88
1871983--1872050	19	3.9	19	74	21	76	35	13	14	36	1.85
1872090--1872115	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1872070--1872136	33	2.0	33	88	0	98	25	14	16	43	1.86
1874585--1874661	28	2.8	26	82	11	93	23	35	22	19	1.96
1874589--1874661	27	2.6	28	84	2	94	23	35	21	19	1.96
1874644--1874865	52	4.3	52	81	6	245	28	26	13	31	1.93
1874477--1874975	263	1.9	266	89	2	790	28	27	13	31	1.94
1887326--1887365	12	3.2	12	89	3	53	85	10	5	0	0.75
1887326--1887369	18	2.6	18	85	7	56	84	11	4	0	0.77
1887336--1887373	13	3.0	13	92	3	60	81	13	5	0	0.85
1889220--1889987	55	13.9	54	89	5	1044	27	30	20	21	1.98
1889220--1889987	110	6.9	110	93	2	1233	27	30	20	21	1.98
1889580--1889720	28	5.1	27	61	21	69	28	31	19	20	1.97
1890665--1890741	21	3.7	21	87	3	102	36	12	15	35	1.86
1890865--1890890	13	2.0	13	100	0	52	30	15	15	38	1.88
1890845--1890911	33	2.0	33	88	0	98	25	14	16	43	1.86
1893241--1893636	52	7.5	53	70	14	196	29	26	12	31	1.93
1893361--1893438	28	2.8	29	81	11	92	25	33	21	19	1.97
1893423--1893641	51	4.2	52	76	9	164	29	25	11	32	1.92
1893249--1893750	261	1.9	266	87	4	750	28	27	13	31	1.94
1897769--1897833	13	5.0	13	80	0	85	29	18	15	36	1.91
1897769--1897833	26	2.5	26	90	5	105	29	18	15	36	1.91
1897965--1898005	22	2.0	20	86	13	57	31	21	4	41	1.74
1898266--1898318	20	2.5	21	81	12	63	24	49	22	3	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1899463--1899516	20	2.7	20	88	0	81	42	12	14	29	1.83
1899548--1899615	33	2.1	32	91	2	109	38	17	11	32	1.86
1901072--1901117	5	9.2	5	100	0	92	58	0	0	41	0.98
1901293--1901668	159	2.3	165	80	7	405	48	6	10	34	1.64
1902794--1902890	51	1.9	51	86	0	140	32	15	8	43	1.76
1919128--1919152	13	1.9	13	100	0	50	36	16	16	32	1.90
1919193--1919259	33	2.0	33	88	0	98	40	14	11	32	1.83
1919215--1919239	13	1.9	13	100	0	50	32	16	16	36	1.90
1920182--1920957	49	15.9	49	85	2	1053	30	17	26	26	1.97
1920182--1920949	98	7.9	98	95	1	1316	30	17	25	26	1.97
1921020--1921093	33	2.3	33	97	2	141	20	20	33	25	1.97
1921109--1921243	33	4.3	33	75	17	151	34	12	31	20	1.90
1921120--1921233	60	1.9	60	85	7	160	28	14	33	23	1.94
1921101--1921291	93	2.0	95	91	2	314	31	13	34	20	1.92
1921086--1921274	33	5.8	32	73	12	138	32	14	32	20	1.92
1921121--1921403	93	3.1	93	81	9	280	29	15	32	22	1.95
1921276--1921512	31	7.7	31	77	4	174	28	17	28	25	1.97
1921306--1921512	62	3.4	59	76	8	200	29	17	28	25	1.97
1921276--1921481	92	2.2	91	82	7	229	28	17	28	25	1.97
1923993--1924581	28	20.9	28	83	6	681	30	28	17	23	1.97
1923993--1924598	141	4.3	140	84	5	722	30	28	17	24	1.97
1923987--1924581	169	3.5	169	84	4	711	30	28	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1926472--1926539	33	2.1	32	89	8	102	35	17	16	30	1.92
1934828--1934880	20	2.7	20	100	0	106	32	22	15	30	1.94
1934869--1934937	19	3.6	19	86	2	93	33	21	15	28	1.95
1934990--1935041	20	2.7	20	91	8	81	38	17	15	28	1.90
1939070--1939465	82	5.0	82	79	7	384	42	12	20	23	1.86
1939511--1939854	47	7.4	46	75	6	237	40	16	20	22	1.91
1939553--1939799	46	5.3	46	82	3	192	44	16	19	20	1.87
1939510--1940033	93	5.6	94	76	7	379	41	16	20	21	1.90
1939553--1940036	47	10.4	47	78	3	341	41	16	19	21	1.90
1939553--1940030	140	3.4	138	76	4	404	42	16	19	21	1.89
1939553--1940060	187	2.7	187	80	4	456	41	16	19	22	1.89
1940048--1940146	30	3.3	29	83	5	108	44	13	21	21	1.85
1941511--1941554	9	4.8	10	78	18	51	6	18	0	75	1.02
1942838--1942863	13	2.0	13	100	0	52	30	15	15	38	1.88
1943576--1943605	16	1.9	15	93	6	51	90	10	0	0	0.47
1945344--1945464	51	2.3	52	87	4	165	31	22	10	35	1.88
1945400--1945684	79	3.6	78	82	8	344	28	25	12	34	1.92
1946668--1946749	28	2.9	29	87	8	116	26	30	14	28	1.95
1947758--1947839	28	2.9	29	87	8	116	26	30	14	28	1.95
1948849--1948930	28	2.9	29	87	8	116	26	30	14	28	1.95
1955914--1955973	24	2.5	24	83	5	68	28	5	5	61	1.38
1962697--1962738	14	3.0	14	89	6	59	83	0	11	4	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1962699--1962752	14	4.0	13	81	13	56	85	1	11	1	0.76
1962713--1962751	12	3.3	12	85	3	53	89	2	7	0	0.56
1962714--1962748	18	1.9	18	94	0	61	88	2	8	0	0.61
1964671--1964720	24	2.1	24	85	7	66	30	4	6	60	1.39
1971590--1971623	17	2.0	17	94	0	59	85	14	0	0	0.60
1972606--1973376	55	13.4	54	81	11	810	27	27	20	25	1.99
1972638--1973377	116	6.5	111	83	9	834	27	27	20	24	1.99
1972638--1973376	171	4.3	172	90	4	1013	27	27	20	24	1.99
1974283--1974308	13	2.0	13	100	0	52	30	15	15	38	1.88
1976673--1976796	51	2.4	52	86	6	162	32	23	12	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20