genome.fa.s373.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Length:  3053563

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2929120--2929192	20	3.6	20	77	3	92	38	13	16	31	1.88
2929137--2929213	21	3.7	21	77	3	84	44	11	15	28	1.82
2929120--2929213	41	2.3	41	96	0	170	40	12	17	29	1.86
2929252--2929277	13	2.0	13	100	0	52	38	15	15	30	1.88
2932578--2932602	11	2.3	11	100	0	50	0	16	0	84	0.63
2932936--2932974	16	2.3	18	86	8	55	69	0	2	28	1.02
2933082--2933503	167	2.5	166	82	4	460	50	7	9	31	1.63
2933160--2933552	167	2.3	165	80	6	423	50	9	9	30	1.67
2935811--2936534	79	9.2	79	80	6	584	34	12	24	27	1.92
2935803--2936510	156	4.5	158	79	4	662	34	13	25	27	1.93
2938904--2939038	51	2.6	51	90	0	207	42	11	17	28	1.85
2940007--2940032	13	2.0	13	100	0	52	38	15	15	30	1.88
2939989--2940052	32	2.0	33	87	3	94	40	17	14	28	1.88
2944091--2944121	15	2.1	15	93	0	53	48	16	22	12	1.80
2946186--2946222	13	2.8	13	95	0	65	29	16	16	37	1.90
2946346--2946392	21	2.3	20	82	10	60	31	19	4	44	1.70
2948559--2948584	13	2.0	13	100	0	52	38	15	15	30	1.88
2948541--2948604	32	2.0	33	84	3	85	42	17	12	28	1.85
2953505--2953536	16	2.0	17	88	11	50	50	12	21	15	1.77
2955613--2955649	13	2.8	13	95	0	65	29	16	16	37	1.90
2958148--2958202	20	2.8	20	88	2	76	34	12	16	36	1.87
2962336--2962615	138	2.0	137	86	4	395	37	15	15	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2964195--2964271	20	3.9	19	78	8	82	42	12	12	31	1.81
2969480--2969599	49	2.4	49	91	0	186	35	17	28	19	1.94
2969715--2970425	28	24.5	28	86	4	767	21	17	31	29	1.96
2971642--2971740	1	99.0	1	73	0	54	4	4	8	83	0.88
2971660--2971739	8	9.9	8	76	14	60	3	3	8	83	0.88
2971649--2971740	19	4.8	18	76	11	78	4	4	8	82	0.93
2971642--2971740	38	2.6	38	80	12	112	4	4	8	83	0.88
2981479--2981506	13	2.2	13	100	0	56	39	17	14	28	1.89
2981461--2981524	33	1.9	33	87	6	94	40	12	15	31	1.85
2981558--2981623	19	3.6	19	67	19	59	33	15	15	36	1.88
2982478--2983143	52	13.4	49	76	10	329	33	17	25	23	1.96
2982515--2983324	101	8.4	101	82	8	817	32	18	25	23	1.97
2982562--2983235	293	2.3	289	89	4	1073	32	18	25	24	1.97
2983112--2983269	39	3.8	39	78	14	172	25	20	27	25	1.99
2983148--2983317	48	3.7	47	77	13	194	28	20	25	24	1.99
2983058--2983318	87	3.0	87	93	2	414	29	20	26	24	1.99
2983322--2983411	32	2.8	32	87	1	117	33	13	32	21	1.92
2984917--2984995	1	79.0	1	74	0	59	0	1	12	86	0.64
2984906--2984995	19	4.7	19	79	20	100	0	1	14	84	0.68
2984904--2984996	11	7.7	12	77	19	79	0	1	15	83	0.69
2984913--2984995	10	8.9	9	82	17	91	0	1	13	85	0.66
2984913--2984992	9	8.3	10	79	8	78	0	1	13	85	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2984905--2984993	40	2.2	40	85	4	115	0	1	14	84	0.69
2984904--2984993	20	4.4	20	79	9	101	0	1	14	84	0.68
2984904--2984993	41	2.2	41	86	7	121	0	1	14	84	0.68
3003830--3003883	20	2.7	20	94	0	90	46	11	11	31	1.74
3003900--3003955	20	2.8	20	86	0	76	41	14	10	33	1.80
3008564--3008615	23	2.2	22	83	12	68	53	0	3	42	1.19
3008580--3008630	23	2.2	23	85	0	66	49	1	5	43	1.38
3008949--3008981	4	8.8	4	87	12	52	78	0	0	21	0.75
3009680--3009720	2	20.5	2	84	0	55	0	46	7	46	1.30
3014615--3014639	12	2.1	12	100	0	50	44	0	0	56	0.99
3015209--3015233	13	1.9	13	100	0	50	68	0	32	0	0.90
3015303--3015365	17	3.8	18	76	12	55	31	1	1	65	1.12
3015328--3015367	11	3.7	11	83	6	55	30	0	0	70	0.88
3015332--3015378	21	2.2	21	85	7	60	29	0	0	70	0.88
3016086--3016148	18	3.4	18	77	12	65	61	0	1	36	1.05
3016554--3016589	17	2.1	17	89	0	54	50	19	0	30	1.48
3017236--3017265	14	2.1	15	93	6	53	60	0	0	40	0.97
3017298--3017337	20	2.0	21	90	5	64	30	5	10	55	1.54
3017721--3017784	16	4.1	15	82	9	74	31	7	10	50	1.66
3017722--3017782	32	1.9	32	89	0	95	31	8	8	52	1.60
3018253--3018291	19	2.0	20	90	9	64	41	2	5	51	1.38
3019813--3020072	50	5.2	50	87	1	360	28	16	20	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3021649--3021696	14	3.2	14	82	8	51	39	6	25	29	1.80
3021626--3021705	17	5.1	17	71	26	77	38	7	26	27	1.83
3024038--3024084	23	2.0	24	84	12	62	59	19	4	17	1.53
3027805--3027930	49	2.5	52	89	3	195	31	15	17	34	1.92
3027939--3027963	13	1.9	13	100	0	50	36	16	16	32	1.90
3027993--3028017	13	1.9	13	100	0	50	32	16	16	36	1.90
3027973--3028037	33	2.0	33	87	0	94	40	15	12	32	1.84
3028985--3029010	13	2.0	13	100	0	52	38	15	15	30	1.88
3031226--3031270	21	2.1	21	84	8	56	53	4	20	22	1.63
3033074--3033104	15	2.1	15	93	0	53	48	16	22	12	1.80
3035118--3035196	20	3.7	21	75	15	72	26	13	15	44	1.84
3035183--3035221	13	3.0	13	96	0	69	30	17	15	35	1.91
3037118--3037144	1	27.0	1	100	0	54	0	0	0	100	0.00
3037771--3037796	13	2.0	13	100	0	52	38	15	15	30	1.88
3038895--3039273	49	8.0	52	76	14	204	32	18	24	24	1.97
3039005--3039279	49	5.9	48	80	10	336	31	18	24	25	1.98
3038922--3039284	92	3.9	92	93	2	586	31	18	25	25	1.98
3039279--3039348	33	2.1	35	91	5	117	21	17	35	25	1.95
3039353--3039898	34	16.6	33	80	10	414	33	12	32	20	1.91
3039353--3039809	34	13.8	34	82	11	458	33	11	33	21	1.89
3039565--3039618	27	2.0	27	88	0	81	22	12	40	24	1.89
3039385--3039810	95	4.3	94	81	12	425	33	11	33	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3039385--3039822	97	4.4	97	82	10	480	34	11	33	20	1.89
3039385--3039822	192	2.2	199	83	10	542	34	11	33	20	1.89
3039353--3039843	97	4.9	98	75	16	399	33	12	33	20	1.90
3039797--3039922	31	4.1	30	84	6	153	32	15	28	23	1.95
3048084--3048210	50	2.5	52	92	2	204	31	18	18	32	1.94
3048219--3048243	13	1.9	13	100	0	50	36	16	16	32	1.90
3048284--3048350	33	2.0	33	88	0	98	40	14	11	32	1.83
3048306--3048330	13	1.9	13	100	0	50	32	16	16	36	1.90
3049260--3049638	49	8.0	52	76	14	204	32	17	24	25	1.97
3049327--3049649	49	7.1	43	78	13	353	30	18	25	25	1.98
3049287--3049649	92	3.9	92	93	2	586	31	18	25	25	1.98
3049644--3049713	33	2.1	35	91	5	117	21	17	35	25	1.95
3049718--3050263	34	16.6	33	80	10	405	33	12	32	20	1.91
3049718--3050174	34	13.8	34	81	11	449	33	11	33	21	1.89
3049930--3049983	27	2.0	27	88	0	81	22	12	40	24	1.89
3049750--3050175	95	4.3	94	81	12	416	33	11	33	21	1.90
3049890--3050017	61	2.1	60	86	5	177	33	11	34	20	1.89
3049951--3050175	63	3.4	63	80	10	249	31	11	35	22	1.89
3049750--3050187	97	4.4	97	81	10	471	34	11	33	20	1.89
3049750--3050187	192	2.2	199	83	10	533	34	11	33	20	1.89
3050162--3050287	31	4.1	30	84	6	153	32	15	28	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!