genome.fa.s373.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Length:  3053563

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  7  of  20  ( 2389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921330--921508	88	2.1	88	93	2	308	32	18	6	42	1.75
927378--927434	21	2.7	21	97	0	105	33	10	19	36	1.86
927490--927557	19	3.9	19	78	21	85	35	11	14	38	1.83
927511--927535	13	1.9	13	100	0	50	36	16	16	32	1.90
927492--927554	32	2.0	32	96	0	117	34	12	15	36	1.86
927597--927622	13	2.0	13	100	0	52	30	15	15	38	1.88
927577--927643	33	2.0	33	88	0	98	25	14	16	43	1.86
930095--930170	27	2.8	28	85	2	91	25	36	19	18	1.94
929984--930302	51	6.0	53	70	8	195	29	26	11	31	1.92
930311--930382	28	2.6	28	88	0	99	23	31	20	23	1.98
929981--930433	212	2.1	211	90	3	705	28	27	13	30	1.94
930089--930464	107	3.5	104	69	13	291	27	29	14	28	1.96
930337--930491	79	2.0	80	87	6	226	27	30	14	27	1.95
933666--933695	13	2.3	13	94	0	51	36	10	16	36	1.82
933649--933711	33	1.9	33	96	0	117	33	17	14	34	1.90
933649--933711	20	3.5	20	68	28	68	33	17	14	34	1.90
933740--933793	19	2.8	20	85	2	74	38	12	18	29	1.88
938665--938710	24	1.9	24	82	8	58	52	4	4	39	1.41
940280--940310	15	2.1	15	93	0	53	61	0	12	25	1.32
941948--941977	15	1.9	16	93	6	53	83	0	13	3	0.77
944173--944209	19	1.9	19	88	0	56	43	5	0	51	1.24
946829--947073	75	3.3	75	84	4	316	40	16	8	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947364--947488	36	3.4	36	65	10	99	39	21	6	32	1.79
947364--947509	75	1.9	75	94	0	256	39	21	7	32	1.81
947809--947866	27	2.1	27	90	0	89	27	0	41	31	1.56
947809--947875	27	2.5	27	85	4	73	29	0	40	29	1.57
955342--955462	60	2.0	60	88	0	179	39	5	27	27	1.79
956996--957050	27	2.0	27	96	0	101	45	20	0	34	1.51
960406--960462	13	4.6	13	76	22	52	56	1	0	42	1.10
960413--960456	18	2.4	19	81	11	56	56	2	0	40	1.11
961488--961527	10	3.8	11	78	21	50	55	0	0	45	0.99
962353--962384	16	2.0	16	100	0	64	56	12	6	25	1.59
962694--962720	13	2.1	13	100	0	54	33	7	0	59	1.25
965451--965952	167	3.0	167	98	0	968	40	11	17	31	1.85
969142--969176	15	2.4	14	90	4	52	85	0	11	2	0.69
969142--969194	23	2.3	23	86	0	70	81	0	11	7	0.88
969392--969841	196	2.3	194	79	6	471	25	11	14	48	1.76
973036--973073	20	1.9	20	88	0	58	65	0	0	34	0.93
973171--973224	15	3.5	15	77	7	54	37	0	0	62	0.95
973625--973651	2	13.5	2	100	0	54	48	0	0	51	1.00
973742--973813	19	3.7	18	77	18	58	48	0	2	48	1.16
973752--973823	22	3.4	22	79	11	62	48	0	2	48	1.16
973812--973854	10	4.1	10	81	18	52	48	2	2	46	1.27
975684--975716	16	2.0	17	88	5	50	57	3	0	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976089--976220	13	10.3	12	68	22	74	62	0	0	37	1.01
976089--976142	14	4.1	14	76	16	53	64	0	0	35	0.94
976089--976168	26	3.1	27	79	16	89	62	0	0	37	0.95
976106--976177	20	3.5	20	68	22	60	61	0	0	38	0.96
976127--976237	15	7.1	15	69	17	57	60	0	0	38	1.03
976117--976222	8	13.0	8	67	21	60	60	0	0	38	1.03
976089--976222	42	3.5	40	74	18	124	61	0	0	37	1.01
976092--976219	21	6.2	20	68	25	81	61	0	0	37	1.02
976171--976234	21	3.1	21	67	15	53	60	1	0	37	1.06
983692--983739	24	2.0	24	84	8	62	52	0	6	41	1.27
984314--984404	33	2.9	32	82	14	102	53	0	0	46	1.00
984413--984449	19	1.9	19	94	0	65	54	0	0	45	1.00
984543--984572	14	2.1	15	93	6	53	33	0	0	66	0.92
984995--985030	12	3.2	12	92	7	58	44	0	5	50	1.25
986245--986292	24	2.0	24	100	0	96	29	45	4	20	1.70
986613--986682	25	2.8	25	87	6	90	42	25	10	21	1.84
986667--986737	27	2.6	27	88	6	99	46	23	7	22	1.76
991207--991276	24	2.8	25	89	6	99	44	25	8	21	1.80
991261--991331	27	2.6	28	88	2	99	49	23	4	22	1.67
991995--992019	7	3.6	7	100	0	50	72	12	0	16	1.13
992016--992044	3	9.7	3	100	0	58	65	0	0	34	0.93
993530--993562	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993609--993645	2	18.5	2	94	0	65	51	0	0	48	1.00
993824--993884	29	2.1	30	90	3	97	47	0	0	52	1.00
994001--994061	33	1.9	31	83	12	79	31	1	1	65	1.12
994109--994142	15	2.5	13	90	9	50	41	0	0	58	0.98
994116--994160	15	2.9	15	81	12	56	37	0	0	62	0.96
994302--994340	12	3.2	12	85	7	60	56	2	0	41	1.13
994267--994340	26	2.9	27	84	6	82	54	5	1	39	1.32
994301--994339	13	3.1	13	85	7	62	58	2	0	38	1.12
994301--994361	25	2.4	25	83	8	70	55	4	0	39	1.21
994917--994966	19	2.6	19	80	3	64	40	2	0	58	1.10
999201--999244	17	2.5	18	77	7	54	31	0	0	68	0.90
1000581--1000634	20	2.7	20	82	0	63	33	11	18	37	1.86
1002627--1002668	15	2.6	16	81	11	50	57	4	7	30	1.47
1008629--1008684	28	2.0	28	100	0	112	32	10	28	28	1.90
1018374--1018409	18	2.0	18	88	0	54	2	0	83	13	0.76
1018377--1018410	16	2.2	16	89	5	52	2	0	85	11	0.71
1021842--1022079	83	2.8	83	80	3	271	38	21	12	27	1.89
1023411--1023456	21	2.2	21	81	11	60	52	0	4	43	1.21
1023526--1023581	21	2.8	20	83	5	60	57	0	5	37	1.22
1023842--1023869	14	2.0	14	100	0	56	50	0	14	35	1.43
1023883--1023927	20	2.3	20	85	11	58	73	0	0	26	0.84
1024809--1024853	22	2.1	22	83	4	56	24	2	4	68	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024913--1024980	29	2.4	29	81	11	79	23	2	0	73	0.97
1026163--1026208	22	2.0	22	84	12	58	39	0	0	60	0.97
1026248--1026294	21	2.2	21	84	0	58	48	19	8	23	1.75
1029552--1029597	20	2.2	21	92	3	76	41	4	17	36	1.69
1029655--1029795	52	2.7	51	86	5	192	29	17	15	37	1.90
1030792--1030829	20	1.9	20	94	0	67	31	7	15	44	1.75
1032051--1032113	19	3.0	20	75	11	56	44	11	4	39	1.61
1032059--1032100	19	2.3	19	87	4	59	42	11	7	38	1.69
1032956--1033165	22	9.4	22	70	12	97	39	12	8	40	1.73
1034011--1034048	19	2.0	19	100	0	76	36	15	15	31	1.90
1034160--1034290	58	2.3	58	82	7	151	29	9	9	51	1.66
1034152--1034299	58	2.6	57	76	17	146	28	9	8	53	1.63
1034374--1034535	58	2.8	58	76	10	145	25	14	12	46	1.81
1034603--1034885	78	3.6	77	77	7	259	36	15	13	34	1.87
1041122--1041168	23	2.0	23	100	0	94	40	8	8	42	1.66
1041824--1041871	23	2.0	24	84	8	62	39	4	2	54	1.32
1045414--1045463	22	2.3	22	85	0	64	38	6	26	30	1.80
1050958--1050982	2	12.5	2	100	0	50	52	48	0	0	1.00
1051727--1051753	14	1.9	14	100	0	54	22	0	3	74	0.98
1051876--1051910	13	2.8	12	91	4	52	62	0	0	37	0.95
1055710--1055832	31	3.9	31	85	10	144	34	8	21	34	1.85
1056417--1057100	344	2.0	344	90	1	1077	38	20	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058921--1058972	19	2.7	19	90	0	77	38	9	15	36	1.80
1059082--1059133	22	2.6	19	74	14	52	25	23	3	48	1.68
1062076--1062188	31	3.5	33	84	10	144	30	13	22	33	1.92
1063214--1063252	19	2.1	19	95	0	69	56	0	23	20	1.42
1063838--1063928	45	2.0	45	86	0	128	36	12	23	28	1.90
1064467--1064491	13	1.9	13	100	0	50	48	0	8	44	1.32
1064543--1064585	19	2.3	19	80	4	52	34	4	6	53	1.49
1066096--1066307	85	2.5	85	84	0	271	18	30	14	36	1.90
1067244--1067344	51	2.0	52	88	5	152	40	8	19	30	1.82
1067277--1067562	79	3.6	79	84	1	351	36	11	23	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20