genome.fa.s373.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Length:  3053563

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  8  of  20  ( 2389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067274--1067562	158	1.8	158	85	3	411	36	11	23	28	1.90
1069846--1069961	50	2.3	50	86	2	153	41	12	17	29	1.85
1070490--1070992	61	8.3	61	84	1	571	28	17	27	26	1.98
1071539--1071564	13	2.0	13	100	0	52	38	15	15	30	1.88
1072199--1072223	10	2.5	10	100	0	50	48	36	0	16	1.46
1082671--1082696	13	2.0	13	100	0	52	30	15	15	38	1.88
1082756--1082828	20	3.6	20	81	3	101	31	19	13	35	1.91
1082735--1082828	41	2.3	41	96	0	170	30	18	12	38	1.88
1082735--1082810	21	3.7	21	78	3	91	30	17	11	40	1.85
1085257--1085321	13	5.0	13	94	0	112	35	15	18	30	1.92
1085257--1085320	26	2.5	26	100	0	128	34	15	18	31	1.93
1085307--1085385	20	3.7	20	75	18	70	45	15	13	25	1.83
1087401--1087431	15	2.1	15	93	0	53	12	22	16	48	1.80
1091547--1091619	20	3.6	20	81	3	101	32	17	13	35	1.89
1091526--1091619	41	2.3	41	94	3	163	31	17	12	38	1.87
1091526--1091601	21	3.7	21	77	7	84	31	15	11	40	1.84
1092941--1093257	165	1.9	164	80	4	370	34	18	23	23	1.96
1093340--1093447	43	2.4	45	86	7	139	32	18	25	23	1.97
1093451--1093722	95	2.9	95	83	3	298	19	15	33	31	1.93
1093502--1093722	96	2.3	95	85	3	293	19	16	32	31	1.94
1093467--1093722	32	8.0	32	81	4	241	19	16	32	32	1.93
1093502--1093722	64	3.5	64	84	4	286	19	16	32	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093904--1093993	28	3.2	28	91	0	135	25	20	28	25	1.99
1094037--1094066	14	2.2	14	94	5	53	40	13	6	40	1.71
1111175--1111430	32	8.0	31	81	6	221	31	30	16	21	1.95
1111178--1111446	64	4.2	65	79	7	268	30	30	16	22	1.96
1111175--1111446	95	2.9	95	79	6	300	30	30	16	22	1.95
1111452--1111567	48	2.6	44	83	6	144	23	24	20	31	1.98
1111481--1111617	48	2.8	48	84	6	168	22	22	17	37	1.94
1111671--1111789	61	2.0	61	87	0	175	24	25	12	37	1.90
1111679--1111885	113	1.8	113	80	0	252	26	25	13	34	1.93
1116505--1116539	12	2.9	12	84	16	54	2	14	0	82	0.77
1116508--1116540	13	2.6	13	85	4	50	3	12	0	84	0.72
1126983--1127014	16	1.9	17	93	6	57	9	0	21	68	1.17
1128902--1128951	22	2.3	22	86	6	66	46	0	16	38	1.47
1129475--1129524	22	2.3	22	86	6	66	46	0	16	38	1.47
1130246--1130276	13	2.4	13	94	0	53	32	12	12	41	1.81
1137234--1137266	16	2.1	16	88	5	50	48	15	27	9	1.74
1138637--1138679	22	2.0	22	95	0	77	39	25	4	30	1.76
1148779--1148844	35	1.9	35	87	9	100	31	22	13	31	1.93
1149233--1149341	52	2.1	52	89	0	164	34	16	14	33	1.89
1151605--1151647	10	4.3	10	77	11	52	69	16	0	13	1.19
1154025--1154155	69	1.9	69	84	3	174	47	18	6	27	1.74
1154772--1154832	19	3.6	18	75	25	69	36	13	16	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154770--1154840	32	2.2	32	97	0	133	33	12	18	35	1.89
1154885--1154912	13	2.2	13	100	0	56	28	14	17	39	1.89
1161967--1162008	21	2.0	22	95	4	77	33	16	9	40	1.81
1167207--1167236	11	2.7	11	89	0	51	43	0	3	53	1.17
1167581--1167629	17	2.8	17	76	17	55	32	0	4	63	1.13
1168201--1168253	16	3.2	16	71	12	54	49	16	9	24	1.76
1173324--1173380	13	3.9	13	76	24	60	35	14	17	33	1.90
1173304--1173404	32	3.1	32	95	1	175	34	10	17	36	1.85
1173302--1173399	19	5.8	18	70	28	81	33	11	17	37	1.85
1173475--1173591	52	2.2	52	90	0	180	35	18	17	28	1.93
1173501--1173603	52	2.0	52	92	0	170	38	18	14	28	1.90
1177772--1177815	22	2.0	22	95	0	79	43	9	11	36	1.72
1179974--1180019	20	2.3	20	96	0	83	19	0	26	54	1.44
1180435--1180495	3	20.3	3	79	12	63	24	0	0	75	0.80
1180438--1180495	19	3.1	19	97	2	109	24	0	0	75	0.80
1183878--1184006	52	2.5	52	96	0	240	28	18	17	34	1.94
1184015--1184039	13	1.9	13	100	0	50	36	16	16	32	1.90
1184784--1185691	101	9.3	99	86	6	1034	31	18	26	23	1.97
1184876--1185691	49	16.8	49	81	9	890	31	18	25	24	1.97
1185273--1185693	52	9.1	44	73	17	334	31	18	25	24	1.98
1185326--1185690	91	4.0	89	87	7	518	30	19	25	25	1.98
1185325--1185689	182	2.0	182	95	0	658	30	19	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1185774--1186013	33	7.3	33	71	18	171	36	13	30	19	1.90
1185790--1186010	68	3.4	67	78	14	271	34	14	31	19	1.92
1185885--1185943	27	2.2	26	88	8	84	35	13	32	18	1.90
1185851--1185976	60	2.1	61	88	4	184	35	14	31	18	1.90
1185990--1186048	31	1.9	31	92	0	100	33	10	23	32	1.88
1187265--1187306	22	1.9	22	90	0	66	2	0	19	78	0.86
1194237--1194365	52	2.5	52	93	0	231	29	18	17	34	1.94
1194451--1194532	19	4.6	19	81	17	113	37	18	12	31	1.87
1194438--1194514	32	2.4	32	93	0	127	37	16	14	31	1.89
1194469--1194495	13	2.1	13	100	0	54	40	14	14	29	1.86
1194521--1194545	13	1.9	13	100	0	50	32	16	16	36	1.90
1197870--1197900	13	2.4	13	94	0	53	45	0	0	54	0.99
1204227--1204252	3	8.7	3	100	0	52	30	0	0	69	0.89
1204906--1204958	16	3.3	16	74	10	54	52	0	0	47	1.00
1204983--1205031	22	2.2	23	92	3	82	61	0	0	38	0.96
1204978--1205032	23	2.3	23	84	9	76	63	0	0	36	0.95
1205518--1205544	2	13.5	2	100	0	54	48	0	0	51	1.00
1205591--1205633	14	3.2	13	84	12	52	51	0	0	48	1.00
1205591--1205653	24	2.7	23	76	14	65	49	1	0	49	1.10
1205618--1205655	10	3.9	10	82	3	51	42	2	0	55	1.14
1205648--1205694	18	2.5	20	86	10	64	36	2	0	61	1.08
1205655--1205701	18	2.7	18	81	15	62	40	2	0	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206454--1206503	15	3.2	15	78	10	55	72	2	2	24	1.06
1206492--1206541	18	2.8	18	74	14	50	64	0	2	34	1.05
1206539--1206596	10	5.7	10	85	2	71	63	3	0	32	1.11
1206621--1206645	3	8.3	3	100	0	50	32	0	0	68	0.90
1217382--1217455	35	2.1	35	85	5	96	37	4	21	36	1.73
1219281--1219332	26	2.0	26	92	0	86	40	9	25	25	1.85
1219423--1219459	2	18.5	2	100	0	74	48	0	0	51	1.00
1223991--1224023	11	3.1	11	86	4	50	66	6	0	27	1.15
1225149--1225228	20	3.7	20	74	22	72	36	17	13	32	1.89
1225147--1225212	13	5.5	13	77	20	81	36	16	13	33	1.88
1225257--1225311	20	2.8	20	91	2	85	36	18	12	32	1.88
1225297--1225323	13	2.1	13	100	0	54	40	14	14	29	1.86
1225868--1225939	22	3.3	22	79	11	85	29	27	2	40	1.70
1226741--1226805	33	2.0	33	90	6	105	26	10	16	46	1.80
1226761--1226786	13	2.0	13	100	0	52	30	15	15	38	1.88
1227507--1227550	21	2.1	21	83	8	54	27	31	2	38	1.69
1229345--1229369	13	1.9	13	100	0	50	32	16	20	32	1.94
1231448--1231479	15	2.1	15	94	0	55	15	21	15	46	1.83
1240012--1240065	19	2.8	20	91	2	83	37	18	14	29	1.91
1243990--1244027	13	2.9	13	96	0	67	31	15	18	34	1.92
1245011--1245064	20	2.6	21	88	2	74	40	9	14	35	1.78
1245030--1245084	20	2.7	21	85	2	67	41	12	14	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245479--1245533	14	4.1	14	81	13	80	56	1	0	41	1.10
1245474--1245531	25	2.3	25	96	0	107	55	1	0	43	1.10
1250173--1250197	10	2.5	10	100	0	50	8	12	0	80	0.92
1251700--1251733	17	1.9	18	88	5	52	26	2	5	64	1.30
1256021--1256060	20	2.0	20	85	5	53	45	10	17	27	1.80
1256130--1256168	19	2.1	19	90	0	60	23	5	10	61	1.48
1256149--1256262	52	2.2	52	79	1	122	28	14	13	44	1.82
1258831--1258902	28	2.6	28	88	0	99	23	19	34	22	1.96
1258896--1259004	50	2.2	50	81	5	130	33	11	22	32	1.89
1258950--1259143	80	2.4	78	83	3	226	35	13	23	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20