genome.fa.s446.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  10  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411387--1411444	11	5.2	11	82	12	73	0	0	13	86	0.58
1418886--1418911	13	2.0	13	100	0	52	38	15	15	30	1.88
1418960--1419033	20	3.8	19	78	7	76	35	18	14	31	1.92
1421657--1421697	20	2.0	20	86	9	57	51	19	2	26	1.59
1427669--1427717	13	4.2	13	75	24	54	38	18	10	32	1.84
1427669--1427738	33	2.1	34	86	7	99	35	20	11	32	1.88
1429470--1429582	50	2.2	51	85	1	147	30	24	12	32	1.92
1429521--1429816	79	3.8	78	79	9	316	28	24	14	33	1.94
1429757--1429872	51	2.3	52	87	4	173	31	23	10	34	1.88
1429855--1429933	28	2.8	28	86	3	97	21	29	20	29	1.98
1438950--1439976	514	2.0	516	83	5	1292	38	17	16	27	1.91
1440282--1440330	19	2.5	20	90	3	73	36	14	16	32	1.89
1444916--1444967	20	2.7	20	90	3	79	28	11	21	38	1.88
1445010--1445061	20	2.5	21	87	3	70	30	19	15	34	1.93
1447045--1447096	21	2.4	21	84	9	61	7	28	44	19	1.78
1447540--1447564	13	1.9	13	100	0	50	36	16	16	32	1.90
1447520--1447583	33	1.9	33	93	0	110	34	12	21	31	1.91
1448369--1448674	61	5.0	62	82	4	341	33	18	22	25	1.97
1448367--1450761	123	19.5	122	71	13	885	33	19	22	24	1.97
1448713--1448796	43	1.9	44	90	2	134	33	21	17	27	1.96
1448756--1450740	61	32.1	63	74	10	945	33	19	22	24	1.97
1448756--1450772	123	16.3	122	74	9	964	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1449399--1449482	42	2.0	42	85	0	114	34	14	19	32	1.91
1450812--1451624	61	13.3	61	81	3	889	33	18	22	25	1.97
1451636--1451723	32	2.8	31	74	5	88	36	15	23	23	1.94
1452622--1452737	58	2.0	59	86	1	162	23	13	15	47	1.81
1456059--1456227	87	1.9	87	97	0	320	28	14	27	28	1.95
1457921--1458387	79	6.0	78	80	8	431	37	12	22	27	1.90
1458141--1458196	28	1.9	30	85	7	80	35	17	25	21	1.95
1457925--1458388	157	3.0	153	81	8	453	37	12	22	27	1.90
1458383--1458425	19	2.3	19	95	0	77	60	4	9	25	1.47
1464762--1464820	20	2.8	20	79	5	64	38	10	11	38	1.76
1465173--1465197	13	1.9	13	100	0	50	36	16	16	32	1.90
1465155--1465223	34	2.1	34	86	2	95	34	11	13	40	1.80
1465263--1465287	13	1.9	13	100	0	50	32	16	16	36	1.90
1465296--1465420	52	2.4	52	95	0	223	36	18	17	28	1.94
1470265--1470310	7	6.6	7	84	0	65	69	2	2	26	1.11
1471056--1471119	29	2.3	26	77	17	65	57	0	4	37	1.19
1474365--1474421	13	4.5	12	79	16	53	66	8	1	22	1.29
1475304--1475556	82	3.1	82	91	2	427	34	16	6	42	1.74
1478391--1478440	2	26.0	2	76	8	50	50	4	2	44	1.32
1480161--1480201	2	20.5	2	94	0	73	0	46	0	53	1.00
1480295--1480335	21	2.0	21	85	0	55	21	24	2	51	1.60
1489214--1489258	17	2.6	18	77	19	51	20	2	20	57	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1489585--1489727	36	3.9	36	77	3	126	25	18	20	34	1.96
1489585--1489754	73	2.3	74	82	2	200	25	16	21	36	1.94
1489575--1489754	37	4.9	37	75	2	166	25	17	22	35	1.96
1506141--1506174	11	2.9	11	91	8	50	0	14	0	85	0.60
1506145--1506198	4	13.5	4	80	18	51	1	22	0	75	0.89
1512496--1512553	11	5.4	11	81	4	64	86	8	1	3	0.76
1512496--1512559	20	3.0	21	80	14	71	84	9	3	3	0.84
1513774--1514146	28	12.9	28	81	7	397	28	30	18	22	1.97
1513774--1514103	144	2.3	144	88	2	484	28	31	17	21	1.97
1513769--1514146	60	6.5	57	81	7	354	28	30	18	22	1.97
1513772--1514148	88	4.3	86	81	6	413	28	30	18	22	1.97
1517363--1517418	20	2.8	20	89	5	78	41	12	14	32	1.83
1518313--1518534	49	5.0	44	77	10	204	30	17	27	25	1.97
1518552--1519097	28	19.3	29	82	6	554	21	17	28	32	1.96
1518598--1519098	57	8.9	56	86	2	619	22	18	27	31	1.97
1518593--1519098	85	6.0	85	84	7	593	22	17	28	31	1.97
1519461--1519582	37	3.3	37	98	0	235	43	14	14	27	1.85
1520606--1520640	17	2.1	17	89	10	54	0	0	14	85	0.59
1520606--1520640	14	2.5	14	95	0	61	0	0	14	85	0.59
1534932--1535110	28	6.1	29	82	7	211	29	27	17	26	1.97
1535982--1536052	20	3.5	20	84	0	88	32	11	14	42	1.81
1539646--1539689	13	3.3	13	80	3	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539614--1539703	27	3.7	24	71	24	62	48	0	1	50	1.08
1539644--1539693	26	1.9	26	88	8	75	50	0	0	50	1.00
1540497--1540687	52	3.7	51	85	0	238	30	14	10	43	1.80
1541645--1541725	24	3.4	23	77	16	76	72	2	0	24	0.96
1541687--1541768	24	3.2	25	75	16	78	71	1	2	24	1.05
1541647--1541738	17	5.5	17	72	20	61	73	3	0	22	0.97
1541647--1541754	41	2.6	44	85	7	136	71	2	1	24	1.09
1541915--1542041	58	2.2	59	89	1	202	48	17	24	10	1.78
1543735--1543774	5	8.4	5	89	10	66	17	0	0	82	0.67
1543796--1543985	79	2.4	79	83	3	222	28	24	12	34	1.92
1556865--1556920	28	2.0	28	89	0	85	23	25	21	30	1.99
1557163--1557292	31	4.2	31	78	11	140	27	28	20	23	1.99
1557167--1557292	63	2.0	63	81	7	148	28	28	19	23	1.98
1557167--1557290	32	3.9	31	78	3	122	28	28	19	24	1.98
1557346--1557575	122	1.9	120	89	3	354	23	26	13	36	1.92
1557598--1557774	52	3.4	52	76	9	182	24	27	14	32	1.95
1557738--1557827	43	2.1	43	85	0	117	30	25	14	30	1.95
1558683--1558808	58	2.2	58	88	4	182	46	17	25	10	1.79
1560535--1560589	3	18.7	3	92	3	94	29	0	0	70	0.87
1561694--1561761	19	3.9	19	78	21	85	35	11	14	38	1.83
1561696--1561758	32	2.0	32	96	0	117	34	12	15	36	1.86
1561715--1561739	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1561781--1561829	20	2.5	20	86	0	62	22	14	18	44	1.85
1564281--1564351	26	2.6	28	84	8	85	22	35	21	21	1.96
1564334--1564483	51	2.9	51	78	6	176	30	23	11	34	1.90
1564171--1564562	211	1.9	210	86	2	563	29	27	13	30	1.94
1570665--1571888	55	21.4	57	83	9	1326	26	27	19	25	1.99
1571016--1571100	27	3.1	27	63	21	68	28	27	18	25	1.98
1571587--1571731	26	5.3	26	63	22	75	28	31	18	20	1.97
1572526--1572593	19	3.9	19	76	21	76	35	10	14	39	1.80
1572528--1572590	32	2.0	32	93	0	108	34	11	15	38	1.83
1572547--1572571	13	1.9	13	100	0	50	36	16	16	32	1.90
1572613--1572661	20	2.5	20	86	0	62	22	14	18	44	1.85
1574510--1574583	27	2.7	26	85	10	87	20	36	24	18	1.95
1574566--1574735	52	3.3	51	77	5	180	31	23	11	33	1.90
1574392--1574701	51	5.9	51	69	16	186	29	26	12	31	1.93
1574402--1574794	211	1.9	211	85	2	556	29	26	13	30	1.94
1576595--1576635	21	2.0	21	85	0	55	36	12	4	46	1.63
1578150--1578231	28	2.9	28	80	7	96	26	17	31	24	1.97
1578214--1578384	51	3.3	51	78	4	189	33	11	25	29	1.91
1578367--1578442	27	2.8	28	88	6	102	21	21	34	23	1.97
1580919--1580944	13	2.0	13	100	0	52	38	15	15	30	1.88
1580898--1580964	33	2.0	33	88	0	98	43	16	14	25	1.86
1580987--1581011	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581843--1582692	55	14.9	55	86	7	987	22	20	30	26	1.98
1581892--1582687	231	3.5	231	89	5	1131	22	20	30	27	1.98
1581863--1582717	341	2.5	341	86	7	1134	23	19	30	27	1.98
1588819--1588900	28	3.0	27	80	7	94	28	17	30	24	1.97
1588883--1589053	51	3.3	51	78	4	189	33	11	25	29	1.91
1589036--1589111	27	2.8	28	88	6	102	21	21	34	23	1.97
1591589--1591614	13	2.0	13	100	0	52	38	15	15	30	1.88
1591568--1591634	33	2.0	33	88	0	98	43	16	14	25	1.86
1591657--1591681	13	1.9	13	100	0	50	32	16	16	36	1.90
1593231--1593420	20	9.8	20	68	21	93	27	18	15	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22