genome.fa.s446.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  18  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914792--2914833	20	2.1	20	90	0	66	47	9	9	33	1.68
2918499--2918524	13	2.0	13	100	0	52	38	15	15	30	1.88
2920739--2920783	21	2.1	21	84	8	56	53	4	20	22	1.63
2922587--2922617	15	2.1	15	93	0	53	48	16	22	12	1.80
2924695--2924733	13	3.0	13	100	0	78	30	15	15	38	1.88
2924854--2924899	21	2.2	20	81	11	58	32	19	4	43	1.71
2927274--2927299	13	2.0	13	100	0	52	38	15	15	30	1.88
2936699--2936766	10	6.7	10	76	20	61	82	10	5	1	0.90
2936710--2936766	19	2.8	21	81	10	73	84	10	5	0	0.77
2936725--2936766	11	4.1	11	76	17	54	88	9	2	0	0.61
2937932--2938333	28	14.6	28	72	10	218	30	29	16	23	1.96
2938016--2938195	54	3.3	54	74	9	166	30	28	17	23	1.97
2937960--2938253	110	2.7	110	83	1	356	30	28	17	23	1.97
2937931--2938182	138	1.8	138	85	3	355	29	28	17	25	1.97
2938129--2938416	82	3.5	82	81	7	300	31	30	17	21	1.96
2937934--2938310	110	3.4	110	73	12	308	30	28	16	23	1.96
2938176--2938356	28	6.7	26	76	10	148	32	30	17	19	1.95
2938239--2938356	54	2.2	54	83	8	152	34	32	16	16	1.91
2938239--2938418	28	6.6	28	74	7	129	32	29	16	21	1.95
2939348--2939416	4	18.5	4	74	14	58	75	0	23	1	0.89
2939348--2939415	11	6.2	11	73	13	59	75	0	23	1	0.89
2939366--2939423	15	4.0	15	82	6	75	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2939348--2939423	22	3.5	22	79	12	61	76	0	22	1	0.86
2939373--2939429	15	3.9	15	86	8	64	80	0	19	0	0.71
2939373--2939429	29	2.0	29	86	6	80	80	0	19	0	0.71
2939361--2939423	18	3.5	17	80	18	74	79	0	19	1	0.82
2939360--2939429	10	6.7	10	73	12	52	78	0	20	1	0.83
2940237--2940646	109	3.8	109	85	4	531	34	15	15	33	1.90
2940237--2940639	219	1.8	218	85	3	569	35	15	16	32	1.90
2941943--2942024	42	1.9	43	95	2	148	18	19	13	48	1.80
2942404--2943009	301	2.0	300	94	0	1050	33	17	20	28	1.95
2946856--2946902	20	2.3	21	76	23	64	34	12	19	34	1.89
2947259--2947327	36	1.9	36	91	2	113	33	13	27	26	1.93
2947258--2947342	36	2.5	34	81	10	93	30	14	25	29	1.95
2948925--2948976	21	2.4	21	78	15	61	57	1	23	17	1.49
2951724--2951805	28	2.9	28	89	3	112	30	17	28	24	1.97
2951785--2951902	51	2.3	51	82	0	146	30	11	27	30	1.92
2951916--2952208	52	5.6	51	73	16	242	32	12	26	27	1.93
2951968--2952039	27	2.6	27	86	2	90	25	20	30	23	1.99
2951840--2952015	80	2.2	79	88	1	253	29	15	27	27	1.96
2951887--2952091	107	1.9	108	87	5	299	29	16	27	26	1.97
2952022--2952209	51	3.6	51	87	3	252	33	11	26	28	1.91
2954564--2954622	13	5.0	13	74	19	58	38	11	16	32	1.86
2954543--2954750	32	6.4	34	75	13	129	35	15	15	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2954674--2954736	19	3.6	19	72	24	75	36	19	11	33	1.87
2954667--2954750	32	2.6	32	98	0	159	36	17	11	33	1.87
2954695--2954749	13	3.8	13	75	25	56	34	18	12	34	1.89
2955063--2955097	17	2.1	17	88	0	52	25	17	11	45	1.81
2956728--2956805	24	3.2	24	87	0	111	21	21	10	46	1.81
2957272--2957340	36	1.9	36	88	8	106	31	10	28	28	1.90
2959177--2959231	20	2.8	20	82	0	74	32	14	9	43	1.77
2960780--2960818	20	1.9	21	94	5	71	41	15	17	25	1.89
2966072--2967073	71	14.8	70	72	10	393	27	21	14	36	1.92
2966078--2966547	204	2.4	195	81	7	500	28	20	13	37	1.90
2966762--2967020	129	2.0	130	84	4	344	27	22	16	33	1.96
2967568--2967619	20	2.6	20	100	0	104	30	23	15	30	1.95
2967694--2967744	20	2.5	20	87	6	68	35	13	17	33	1.89
2973858--2973884	13	2.1	13	100	0	54	29	14	14	40	1.86
2976438--2976483	13	4.0	13	69	30	50	32	13	17	36	1.88
2978447--2978508	20	3.0	20	90	4	88	46	12	12	27	1.79
2982377--2982579	80	2.5	80	78	11	229	28	26	7	37	1.83
2984843--2984905	32	2.0	32	96	0	117	34	4	25	34	1.77
2985482--2985538	19	2.9	19	81	2	69	33	15	17	33	1.92
2986367--2989076	466	5.8	469	85	2	3363	31	18	13	36	1.90
2989448--2990292	159	5.4	159	70	11	472	31	17	14	36	1.90
2990826--2990892	37	1.9	35	88	11	102	29	25	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2991351--2991376	13	2.0	13	100	0	52	30	15	15	38	1.88
2991332--2991394	32	2.0	32	87	6	92	28	15	14	41	1.87
2991415--2991490	21	3.7	21	80	3	100	28	17	11	42	1.84
2991436--2991508	20	3.6	20	81	3	101	31	19	13	35	1.91
2991415--2991508	41	2.3	41	98	0	179	29	18	12	39	1.88
2993136--2993160	13	1.9	13	100	0	50	32	16	16	36	1.90
2996163--2996229	37	1.9	35	88	11	102	29	25	11	32	1.92
2996688--2996713	13	2.0	13	100	0	52	30	15	15	38	1.88
2996669--2996731	32	2.0	32	87	6	92	28	15	14	41	1.87
2996752--2996827	21	3.7	21	80	3	100	28	17	11	42	1.84
2996773--2996845	20	3.6	20	81	3	101	31	19	13	35	1.91
2996752--2996845	41	2.3	41	98	0	179	29	18	12	39	1.88
2997875--2997921	20	2.3	20	81	3	58	36	17	6	40	1.75
2998863--2998902	21	1.9	21	85	10	55	55	10	0	35	1.34
2999225--2999297	21	3.4	22	78	16	73	47	0	0	52	1.00
3001140--3001190	25	2.0	25	85	7	68	60	3	1	33	1.26
3001267--3001308	22	1.9	22	85	0	57	2	35	2	59	1.23
3001586--3001639	22	2.3	24	84	6	76	46	0	1	51	1.11
3002295--3002344	21	2.5	21	78	18	61	58	0	0	42	0.98
3002508--3002539	10	3.1	10	91	8	55	78	0	0	21	0.76
3003481--3003565	21	4.0	21	72	3	64	58	0	3	37	1.15
3003483--3003567	42	2.0	42	81	4	100	58	0	4	36	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3003649--3003697	20	2.5	19	86	6	71	51	0	0	48	1.00
3003653--3003737	22	3.6	22	71	13	62	55	1	0	43	1.07
3003773--3003813	20	2.0	20	86	9	57	56	0	0	43	0.99
3003720--3003788	12	5.7	12	74	17	54	55	2	1	40	1.24
3004220--3004275	28	2.0	27	83	10	69	60	1	0	37	1.07
3004215--3004278	29	2.3	26	79	15	65	60	1	0	37	1.06
3014569--3014615	21	2.3	21	85	10	62	42	10	8	38	1.70
3015440--3015488	26	1.9	25	87	4	71	24	14	10	51	1.73
3018223--3018277	20	2.8	20	77	0	56	38	16	12	32	1.86
3019081--3020308	28	44.2	28	77	8	698	27	15	29	27	1.96
3019698--3020296	27	21.9	27	81	3	572	29	14	30	25	1.95
3019632--3020284	220	3.0	217	78	7	613	29	14	30	26	1.95
3019708--3020296	165	3.6	162	82	4	646	30	13	30	25	1.94
3019819--3020331	247	2.1	249	87	2	737	30	13	30	25	1.94
3023891--3023983	19	4.8	20	80	4	109	37	16	13	32	1.88
3023891--3023983	39	2.4	39	92	0	159	37	16	13	32	1.88
3023891--3024002	39	2.9	39	83	10	122	39	16	13	31	1.87
3031683--3031727	21	2.1	21	84	8	56	53	4	20	22	1.63
3033531--3033561	15	2.1	15	93	0	53	48	16	22	12	1.80
3035574--3035653	20	3.8	20	75	15	79	27	13	15	43	1.84
3035639--3035664	13	2.0	13	100	0	52	30	15	15	38	1.88
3037455--3037526	36	2.0	36	100	0	144	33	2	25	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3037550--3037629	38	2.0	40	83	4	101	36	6	23	33	1.80
3038252--3038277	13	2.0	13	100	0	52	38	15	15	30	1.88
3038234--3038297	32	2.0	33	87	3	94	40	17	14	28	1.88
3041918--3041947	13	2.3	13	100	0	60	36	13	16	33	1.88
3041896--3041964	33	2.1	32	86	10	95	36	17	14	31	1.90
3042967--3044071	28	39.8	28	79	8	719	26	16	29	27	1.97
3043583--3044144	27	20.6	27	80	4	508	29	14	30	25	1.95
3043583--3044143	55	10.3	52	79	8	480	29	14	30	25	1.95
3043653--3044172	219	2.4	221	87	3	748	29	14	30	25	1.95
3043583--3044143	82	6.9	81	82	4	594	29	14	30	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22