genome.fa.s446.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  4  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450373--450444	24	2.9	24	85	6	90	44	25	8	22	1.80
450366--450449	27	3.2	26	78	10	91	47	22	7	22	1.75
451626--451678	19	2.7	20	85	8	72	39	18	13	28	1.88
455818--455846	13	2.2	13	100	0	58	31	0	62	6	1.22
455895--455960	27	2.6	26	83	7	82	46	24	6	22	1.74
457679--457803	60	2.1	60	91	4	200	34	12	20	32	1.91
463477--463532	21	2.5	23	74	8	62	41	0	0	58	0.98
463501--463560	22	2.9	21	75	14	61	48	0	0	51	1.00
467629--467832	76	2.6	78	80	5	218	28	16	29	25	1.96
467784--467855	28	2.6	28	88	0	99	23	19	34	22	1.96
467844--468013	52	3.3	50	79	11	182	32	12	24	29	1.93
467987--468068	27	3.0	28	82	10	98	26	21	29	21	1.99
470491--470516	13	2.0	13	100	0	52	38	15	15	30	1.88
470470--470536	33	2.0	33	88	0	98	43	16	14	25	1.86
470556--470623	19	3.9	18	76	23	83	38	14	11	35	1.83
470578--470602	13	1.9	13	100	0	50	32	16	16	36	1.90
470559--470621	32	2.0	32	96	0	117	36	15	12	34	1.86
470679--470735	21	2.7	21	97	0	105	36	19	10	33	1.86
470743--470772	15	2.0	15	100	0	60	13	6	0	80	0.91
471536--471595	29	2.1	29	84	6	77	35	6	6	51	1.54
471926--471958	16	2.1	16	94	5	59	30	3	6	60	1.36
473309--473339	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475810--475869	31	1.9	31	83	6	77	51	3	10	35	1.52
478365--478412	22	2.2	22	84	0	60	50	2	6	41	1.39
479288--479384	52	1.9	50	85	8	133	45	0	0	54	0.99
479696--479741	10	4.7	10	76	15	51	43	2	0	54	1.12
479939--479977	19	2.1	19	90	4	62	41	7	5	46	1.55
480331--480381	6	9.2	6	75	16	56	33	0	0	66	0.92
480331--480381	11	4.6	11	90	4	77	33	0	0	66	0.92
480330--480375	16	3.0	16	81	15	53	32	0	0	67	0.91
480857--480904	24	2.0	24	84	4	62	18	4	8	68	1.31
482836--482887	18	2.7	19	81	18	63	36	5	3	53	1.43
484277--484325	2	24.5	2	100	0	98	48	0	0	51	1.00
486018--486051	13	2.5	13	90	9	50	76	0	23	0	0.79
486016--486053	15	2.5	15	86	0	58	78	0	21	0	0.74
486692--486726	11	3.2	11	87	0	52	85	0	11	2	0.69
492388--492455	34	2.0	35	82	8	86	50	2	0	47	1.16
492662--492720	15	3.7	16	72	17	59	64	3	0	32	1.10
492695--492744	25	2.0	25	84	0	64	72	2	2	24	1.06
499883--499929	17	2.8	17	87	3	69	21	0	2	76	0.89
499878--499927	25	2.0	25	84	0	64	24	0	2	74	0.93
502294--502327	18	1.9	17	88	5	50	47	5	8	38	1.59
505073--505127	16	3.4	15	80	14	65	40	3	1	54	1.28
507177--507237	32	1.9	32	82	0	77	26	14	18	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515295--515334	16	2.5	16	100	0	80	5	22	12	60	1.52
517525--517554	13	2.3	13	94	0	51	30	13	13	43	1.82
519910--519962	24	2.2	25	86	3	72	49	0	39	11	1.39
519872--519932	30	2.1	30	90	3	97	47	0	39	13	1.42
519883--519986	42	2.5	42	84	7	124	46	0	41	11	1.47
519952--520014	25	2.6	24	76	16	58	49	1	42	6	1.37
526615--526797	79	2.3	78	85	3	267	28	25	13	31	1.94
526771--526825	28	2.0	28	85	0	74	25	25	18	30	1.98
526679--526886	107	1.9	107	85	0	281	28	25	12	33	1.92
528745--528806	32	1.9	32	83	0	79	25	14	17	41	1.88
529103--529138	18	1.9	19	88	5	56	72	11	0	16	1.12
533460--533505	2	23.0	2	100	0	92	50	0	0	50	1.00
534392--534430	18	2.2	18	90	4	62	30	0	2	66	1.05
534511--534539	13	2.2	13	100	0	58	65	6	0	27	1.18
535105--535149	18	2.4	19	82	13	58	31	2	2	64	1.18
535234--535280	10	4.3	12	77	22	59	29	0	0	70	0.88
535758--535817	25	2.4	24	75	5	57	46	5	0	48	1.24
543487--543518	15	2.1	15	94	0	55	71	0	3	25	1.00
543692--543901	107	1.9	109	92	1	352	42	9	13	34	1.76
544018--544053	3	12.0	3	100	0	72	33	0	0	66	0.92
544441--544476	11	3.3	11	88	0	54	30	0	2	66	1.06
544451--544486	18	2.1	18	89	5	56	27	0	5	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544626--544673	15	3.3	14	83	16	62	50	0	2	47	1.12
544634--544673	13	2.8	13	85	14	53	52	0	2	45	1.14
545553--545585	15	2.1	16	88	5	50	27	0	6	66	1.15
545652--545703	25	2.0	27	81	11	63	44	0	1	53	1.11
545749--545801	20	2.6	21	81	3	54	58	3	0	37	1.16
545910--545949	16	2.5	17	84	8	57	50	2	0	47	1.14
545960--546038	40	2.0	41	84	2	106	45	0	1	53	1.08
550761--550856	48	2.0	48	100	0	192	14	8	33	43	1.75
550781--550857	24	3.2	25	63	26	65	14	7	33	44	1.74
554992--555038	22	2.1	22	100	0	94	27	8	19	44	1.79
571085--571123	15	2.7	15	88	4	53	82	17	0	0	0.68
571073--571123	25	2.0	27	84	7	70	78	15	1	3	0.99
571085--571123	13	3.1	12	82	10	51	82	17	0	0	0.68
572270--572307	16	2.3	17	86	4	51	47	21	2	28	1.64
572407--572796	31	12.5	30	81	9	424	24	29	15	31	1.95
572405--572782	64	6.0	63	85	7	452	24	29	15	31	1.95
572407--572846	64	7.0	62	83	10	401	23	29	15	31	1.95
572458--572971	97	5.4	93	77	11	317	22	28	14	33	1.94
572849--572909	27	2.3	27	91	0	95	21	29	13	36	1.91
572818--573010	61	3.0	61	78	12	199	20	27	12	38	1.89
572877--573010	69	2.0	68	86	7	191	19	29	12	38	1.89
572686--573046	33	11.0	34	77	9	252	20	29	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573045--573249	33	6.3	33	89	2	292	30	31	18	20	1.96
573024--573237	99	2.2	98	89	1	331	29	30	18	20	1.97
573255--573873	49	12.6	49	83	4	718	25	24	17	32	1.97
573237--573806	97	5.9	97	89	3	837	25	25	17	31	1.97
573242--573765	146	3.6	146	86	3	738	25	25	17	31	1.97
576300--576350	27	2.0	26	85	11	70	23	39	17	19	1.92
580353--580503	66	2.3	66	82	7	166	20	21	13	45	1.85
580322--580470	33	4.6	32	75	6	129	20	24	13	41	1.88
580369--580503	33	4.1	33	75	6	112	19	20	12	47	1.82
580613--580695	33	2.5	33	86	1	114	19	27	12	40	1.87
580785--580843	27	2.2	27	84	3	75	25	25	11	37	1.90
580766--580950	96	1.9	94	85	2	253	23	28	12	35	1.91
580887--580939	27	2.0	27	88	3	81	22	30	15	32	1.94
580606--580948	156	2.2	156	80	5	386	23	29	11	35	1.90
580814--580956	35	4.4	34	73	17	124	24	27	10	37	1.88
581006--582038	49	20.9	49	80	6	1034	25	26	16	31	1.96
581006--581926	296	3.1	296	88	3	1288	25	26	16	31	1.96
591133--591201	13	4.9	15	72	22	53	49	0	0	50	1.00
591133--591173	14	2.7	16	79	20	52	51	0	0	48	1.00
591685--591746	25	2.8	20	78	21	79	54	0	0	45	0.99
591697--591749	25	2.1	26	96	3	99	52	0	0	47	1.00
592357--592410	27	2.0	27	82	7	65	48	3	0	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592327--592457	70	1.9	67	85	4	181	54	3	0	41	1.18
593088--593123	16	2.3	16	85	4	56	30	0	2	66	1.06
593586--593631	21	2.2	21	84	3	58	41	8	19	30	1.82
593586--593639	20	2.6	20	82	8	56	42	9	18	29	1.81
593679--593719	20	2.0	20	85	0	55	46	12	14	26	1.80
593707--593762	20	2.7	21	94	5	96	26	14	12	46	1.80
596128--596588	79	5.9	77	79	6	390	27	24	12	35	1.91
596519--596637	51	2.3	51	84	11	145	26	24	11	36	1.90
598170--598199	16	1.9	16	93	6	53	53	6	0	40	1.27
599249--599362	60	1.9	60	85	3	158	45	2	14	37	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22