genome.fa.s446.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  7  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997632--997826	61	3.2	61	84	5	261	37	12	28	21	1.90
998011--998140	33	4.0	32	84	5	129	36	13	28	22	1.91
999405--999451	6	7.8	6	80	15	53	2	2	10	85	0.78
999403--999439	17	2.2	17	90	0	56	2	2	8	86	0.76
1009424--1009543	52	2.3	52	97	0	222	29	17	18	35	1.94
1009424--1009563	52	2.7	51	90	4	210	30	17	18	33	1.94
1009641--1009665	13	1.9	13	100	0	50	32	16	16	36	1.90
1009619--1009685	33	2.0	33	88	0	98	40	13	11	34	1.81
1010313--1010349	17	2.2	17	90	0	56	70	0	29	0	0.88
1011610--1011639	14	2.1	14	93	0	51	23	33	10	33	1.88
1016739--1016775	18	2.0	18	89	5	56	83	10	2	2	0.84
1022317--1022347	13	2.4	13	100	0	62	38	12	16	32	1.86
1022295--1022360	33	2.0	33	88	5	98	37	18	12	31	1.87
1022388--1022441	19	2.8	19	88	2	72	35	14	16	33	1.90
1023307--1023370	29	2.2	28	86	2	83	15	26	0	57	1.38
1027727--1028269	79	6.9	78	78	8	456	28	22	13	35	1.92
1027776--1028222	237	1.9	235	81	7	539	28	22	13	35	1.92
1030770--1030832	32	1.9	33	87	9	94	30	12	12	44	1.80
1031155--1031180	13	2.0	13	100	0	52	38	15	15	30	1.88
1031227--1031252	13	2.0	13	100	0	52	30	15	15	38	1.88
1031290--1031327	20	2.1	18	85	14	51	36	15	15	31	1.90
1038260--1038301	10	4.3	10	84	6	59	88	11	0	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038260--1038301	17	2.4	17	88	8	57	88	11	0	0	0.53
1039585--1040409	63	13.0	62	74	12	376	21	28	14	35	1.92
1039575--1039869	96	3.1	96	82	5	348	21	28	14	35	1.93
1039809--1040252	34	13.8	32	78	10	335	20	29	12	37	1.90
1039866--1040249	67	5.9	66	76	12	321	20	29	12	37	1.89
1039931--1040050	27	4.2	27	83	9	132	20	30	13	36	1.90
1039843--1040183	155	2.2	156	83	7	433	20	29	13	36	1.91
1039930--1040183	88	2.8	90	78	14	275	20	28	12	38	1.89
1039585--1040400	33	25.7	32	78	11	375	21	29	14	35	1.93
1040218--1040408	62	3.0	62	79	11	208	21	29	15	32	1.95
1040207--1040401	95	2.1	95	86	3	268	22	28	16	32	1.95
1040254--1040438	62	2.9	60	75	14	178	22	29	15	32	1.95
1040381--1040475	33	3.0	33	80	13	110	22	28	13	35	1.92
1040583--1040649	33	2.0	33	91	0	107	29	32	16	20	1.95
1040644--1042006	92	14.4	92	76	13	866	24	26	17	31	1.97
1040834--1041962	51	23.8	51	70	17	511	25	26	17	31	1.97
1040654--1041902	235	5.3	235	91	1	1888	25	26	17	30	1.97
1041361--1042004	327	2.0	324	83	6	818	24	26	18	30	1.98
1042856--1042881	13	2.0	13	100	0	52	30	15	15	38	1.88
1049812--1049854	21	2.0	21	81	0	50	41	9	13	34	1.77
1050261--1050399	58	2.4	58	78	4	138	29	12	10	47	1.75
1052418--1052463	20	2.3	20	84	0	56	36	8	13	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052484--1052526	21	2.0	21	81	0	50	32	9	11	46	1.72
1062226--1062581	79	4.5	78	79	5	351	30	25	10	33	1.89
1062226--1062520	157	1.9	157	84	5	400	29	26	10	34	1.90
1062542--1062638	51	1.9	51	89	0	149	30	22	10	36	1.88
1062573--1062744	78	2.2	78	82	5	195	27	24	13	33	1.94
1065259--1065308	20	2.5	20	87	3	66	32	20	16	32	1.94
1065255--1065308	19	2.8	19	85	2	72	29	18	16	35	1.93
1065354--1065383	13	2.3	13	100	0	60	33	16	13	36	1.88
1065337--1065406	33	2.1	32	89	10	106	31	14	18	35	1.91
1066996--1067028	12	2.8	12	90	0	57	45	0	27	27	1.54
1070133--1070163	16	1.9	16	93	0	53	54	0	9	35	1.33
1071090--1071156	36	1.9	35	88	11	102	28	25	13	32	1.93
1071616--1071641	13	2.0	13	100	0	52	30	15	15	38	1.88
1073797--1073843	23	2.0	24	84	12	62	61	19	4	14	1.49
1076335--1076401	36	1.9	35	88	11	102	28	25	13	32	1.93
1076861--1076886	13	2.0	13	100	0	52	30	15	15	38	1.88
1078018--1078042	13	1.9	13	100	0	50	36	16	16	32	1.90
1080528--1080555	13	2.2	13	100	0	56	28	14	14	42	1.84
1080622--1080685	33	1.9	32	87	12	94	32	9	18	39	1.83
1085231--1085317	32	2.8	30	79	6	102	28	22	9	39	1.85
1085340--1086306	62	15.6	62	83	1	1103	24	23	20	31	1.98
1086269--1086786	42	12.4	42	71	12	270	20	24	11	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086345--1086786	86	5.3	85	71	11	295	20	24	11	42	1.86
1086337--1086924	249	2.4	246	84	4	749	20	24	11	43	1.85
1091344--1091418	20	3.8	20	77	15	84	40	12	14	33	1.83
1091404--1091428	13	1.9	13	100	0	50	32	16	16	36	1.90
1093634--1093944	79	3.9	78	80	5	340	28	23	12	34	1.92
1093633--1093941	158	2.0	158	85	5	419	28	22	12	35	1.92
1093633--1093997	158	2.3	158	81	6	375	28	24	12	34	1.92
1093633--1093997	79	4.6	79	76	9	334	28	24	12	34	1.92
1095505--1095694	51	3.7	52	83	2	197	40	13	14	32	1.84
1096158--1096214	27	2.1	27	100	0	114	21	17	7	54	1.66
1101585--1101772	72	2.6	72	88	0	270	40	13	14	30	1.85
1101707--1101761	20	2.8	20	88	0	83	40	14	12	32	1.84
1102745--1103224	169	2.8	168	87	2	672	22	16	29	31	1.96
1102695--1103224	28	18.5	28	83	6	589	22	16	30	31	1.95
1104453--1104574	1	122.0	1	71	0	64	0	1	13	83	0.77
1104454--1104554	15	6.4	16	80	14	95	0	0	13	84	0.74
1104462--1104577	10	11.6	10	72	21	75	0	1	14	82	0.79
1104453--1104574	24	5.1	25	75	15	107	0	1	13	83	0.77
1104453--1104577	33	3.8	32	78	16	114	0	1	14	83	0.77
1104453--1104552	16	6.5	15	86	6	98	1	1	14	84	0.74
1110909--1110946	19	2.0	19	100	0	76	21	21	15	42	1.89
1118384--1118440	20	2.8	20	89	0	78	36	12	15	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118336--1118523	72	2.6	71	86	2	243	40	13	14	30	1.85
1119046--1119072	13	2.1	13	100	0	54	29	14	14	40	1.86
1119056--1119112	19	2.9	19	89	2	87	31	15	17	35	1.92
1119141--1119210	33	2.1	34	86	7	99	31	12	20	35	1.90
1122617--1122642	13	2.0	13	100	0	52	30	15	15	38	1.88
1122597--1122660	32	2.0	33	87	3	94	28	14	17	40	1.88
1122701--1122776	20	3.8	20	91	3	109	28	17	15	38	1.90
1124309--1124333	13	1.9	13	100	0	50	32	16	16	36	1.90
1127970--1127995	13	2.0	13	100	0	52	30	15	15	38	1.88
1127950--1128013	32	2.0	33	87	3	94	28	14	17	40	1.88
1128054--1128129	20	3.8	20	91	3	109	28	17	15	38	1.90
1133036--1133084	21	2.3	21	96	0	89	30	4	16	48	1.64
1133828--1133899	20	3.7	20	92	5	112	26	15	15	43	1.86
1133867--1133920	19	2.8	19	91	2	81	29	14	18	37	1.91
1136010--1136054	17	2.6	17	78	3	54	77	6	8	6	1.11
1136010--1136052	18	2.4	18	80	3	52	79	6	9	4	1.06
1137490--1137681	79	2.4	79	82	1	215	31	17	27	23	1.97
1137633--1137704	28	2.6	27	86	8	92	25	18	33	23	1.97
1137689--1137913	52	4.4	51	79	5	227	33	12	24	29	1.92
1137928--1138058	51	2.5	51	84	9	174	32	10	25	31	1.90
1137793--1138046	133	1.9	131	82	7	318	32	13	24	29	1.93
1139862--1139892	11	2.9	11	95	4	55	0	0	19	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140546--1140607	21	3.0	21	100	0	124	38	14	9	37	1.79
1142063--1142104	15	2.8	15	86	13	52	23	0	4	71	1.05
1144096--1144152	19	2.9	19	81	2	69	33	17	14	35	1.90
1144182--1144243	20	3.5	20	71	28	75	29	14	19	37	1.91
1144197--1144227	13	2.4	13	100	0	62	32	16	12	38	1.86
1144182--1144249	33	2.1	33	97	0	127	27	14	20	36	1.92
1151343--1151397	22	2.5	22	100	0	110	34	3	32	29	1.75
1151959--1152010	19	2.7	20	87	6	79	28	15	13	42	1.85
1152040--1152093	20	2.7	20	91	5	83	31	12	18	37	1.89
1154939--1154987	20	2.5	20	90	3	73	30	12	18	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22