genome.fa.s446.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  9  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1285653--1285691	20	2.0	19	85	5	51	33	0	0	66	0.92
1290188--1290352	61	2.7	61	84	0	195	9	21	23	46	1.80
1291352--1291398	17	2.8	17	87	6	69	19	0	4	76	0.95
1291354--1291398	8	5.5	8	86	5	63	17	0	4	77	0.92
1291329--1291399	23	3.0	23	78	11	72	18	1	5	74	1.08
1292056--1292309	62	4.1	62	79	6	241	37	12	25	24	1.91
1292633--1292727	19	5.6	19	71	27	97	32	13	18	34	1.90
1292652--1292708	13	3.9	13	76	24	60	35	14	17	33	1.90
1292633--1292728	32	3.0	32	98	0	183	33	13	18	34	1.90
1292766--1292791	13	2.0	13	100	0	52	30	15	15	38	1.88
1296021--1296689	31	21.3	31	75	7	537	23	17	28	30	1.97
1296291--1296544	95	2.7	95	93	1	424	24	17	27	30	1.97
1296018--1296689	64	10.7	60	76	8	388	23	17	28	30	1.97
1296478--1296874	31	12.9	31	79	4	236	20	22	28	28	1.99
1296086--1296689	123	4.8	123	75	8	353	23	17	28	30	1.97
1296852--1298073	56	22.0	56	81	4	1204	23	19	29	27	1.98
1296852--1298073	84	14.7	84	82	4	1283	23	19	29	27	1.98
1296852--1297404	28	19.8	28	83	1	624	23	20	29	26	1.98
1297372--1297459	45	2.0	45	90	0	140	26	15	30	27	1.96
1297417--1298074	28	23.4	28	83	5	666	23	20	29	27	1.98
1299237--1299296	24	2.4	25	81	15	63	8	13	8	70	1.35
1299264--1299348	24	3.7	24	74	17	81	5	11	10	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299266--1299339	23	3.3	23	79	11	91	5	10	9	74	1.21
1304776--1304890	56	2.1	56	100	0	230	26	20	13	40	1.89
1305528--1305583	17	3.3	17	82	9	69	19	1	5	73	1.12
1306038--1306163	59	2.2	58	83	1	153	29	11	14	45	1.79
1306308--1306595	79	3.6	79	80	1	317	32	10	18	38	1.84
1307066--1307162	19	5.8	18	72	27	97	32	12	17	37	1.87
1307068--1307167	32	3.1	32	98	0	191	34	12	18	36	1.87
1307087--1307143	13	3.9	13	76	24	60	35	14	17	33	1.90
1307215--1307240	13	2.0	13	100	0	52	30	15	15	38	1.88
1307228--1307356	52	2.5	52	94	0	231	34	17	17	29	1.94
1310633--1310671	20	2.0	19	85	5	51	56	5	2	35	1.35
1312633--1312685	18	2.9	19	81	13	58	43	0	1	54	1.11
1312839--1312897	2	29.0	2	96	3	109	49	1	0	49	1.11
1314515--1314553	2	19.5	2	100	0	78	51	0	0	48	1.00
1318773--1319180	164	2.5	162	86	5	556	43	10	11	34	1.74
1319935--1319978	22	2.0	22	100	0	88	31	36	0	31	1.58
1320147--1320185	18	2.2	18	86	9	53	2	35	0	61	1.10
1320468--1320505	4	9.2	4	83	16	51	76	0	0	23	0.79
1320468--1320502	9	4.0	9	92	7	63	77	0	0	22	0.78
1320468--1320505	17	2.3	17	95	4	69	76	0	0	23	0.79
1320630--1321190	163	3.4	163	83	4	598	51	7	10	29	1.65
1320737--1321190	163	2.8	162	86	4	603	51	8	11	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322141--1322283	43	3.3	43	69	5	128	32	18	32	16	1.93
1322076--1322373	85	3.5	85	80	3	269	34	15	31	18	1.92
1323278--1323333	19	2.9	19	91	2	85	35	17	16	30	1.92
1323318--1323344	13	2.1	13	100	0	54	40	14	14	29	1.86
1326712--1326764	20	2.6	21	82	8	65	30	16	15	37	1.90
1326752--1326776	13	1.9	13	100	0	50	36	16	16	32	1.90
1327332--1327376	22	2.0	22	87	8	65	37	24	0	37	1.56
1329240--1329264	13	1.9	13	100	0	50	32	20	16	32	1.94
1329467--1329492	8	3.2	8	100	0	52	61	23	0	15	1.33
1335411--1335474	33	2.0	33	90	3	103	26	10	20	42	1.85
1335506--1335560	21	2.6	21	88	0	92	32	16	9	41	1.80
1337746--1337794	13	4.2	13	70	24	54	36	16	14	32	1.89
1337746--1337814	34	2.1	32	89	10	104	36	15	13	34	1.87
1337849--1337897	19	2.5	19	80	6	53	30	18	18	32	1.95
1337883--1337907	13	1.9	13	100	0	50	36	16	16	32	1.90
1340482--1340507	13	2.0	13	100	0	52	38	15	15	30	1.88
1340459--1340527	34	2.1	32	84	10	86	36	14	13	36	1.85
1345937--1345992	19	2.9	19	86	2	67	35	14	16	33	1.88
1346376--1347017	45	14.4	45	73	5	410	40	14	23	21	1.90
1346374--1346706	89	3.7	89	86	1	443	40	15	22	22	1.90
1346371--1347024	134	4.9	133	76	4	498	40	14	22	21	1.90
1346387--1346839	179	2.5	178	81	3	498	41	14	22	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346691--1347034	89	3.9	89	85	3	399	41	14	23	20	1.89
1346372--1346935	223	2.5	223	86	1	720	40	14	22	21	1.90
1346691--1347034	178	1.9	176	84	1	454	41	14	23	20	1.89
1352581--1352651	20	3.5	20	76	0	79	39	12	12	35	1.82
1353535--1353875	28	11.9	28	85	3	430	22	18	31	28	1.97
1355080--1355152	35	2.1	35	85	7	96	2	5	10	80	0.97
1355098--1355161	28	2.2	28	83	8	76	6	3	7	82	0.92
1370251--1370650	79	5.1	78	81	5	421	34	13	25	27	1.93
1370244--1370650	158	2.6	157	84	5	511	33	13	25	27	1.93
1374386--1374772	162	2.4	162	87	4	536	42	11	11	34	1.78
1375728--1375763	17	2.2	16	90	5	54	2	25	0	72	0.98
1376333--1376751	161	2.5	163	84	8	512	51	6	12	29	1.64
1378205--1378445	101	2.4	98	84	6	292	31	12	25	30	1.93
1380863--1380922	20	3.0	20	66	9	59	43	11	6	38	1.68
1380845--1380922	40	2.0	40	86	0	111	42	10	10	37	1.73
1380965--1381018	20	2.7	20	91	8	83	29	18	12	38	1.88
1386104--1386160	20	2.9	19	81	5	69	42	12	10	35	1.77
1386104--1386154	19	2.6	20	87	3	68	41	13	11	33	1.81
1386146--1386170	13	1.9	13	100	0	50	40	16	8	36	1.77
1388374--1388418	21	2.1	21	84	8	56	22	20	4	53	1.63
1390626--1390651	13	2.0	13	100	0	52	30	15	15	38	1.88
1393673--1393713	20	2.0	20	100	0	82	31	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1393723--1393747	13	1.9	13	100	0	50	32	16	16	36	1.90
1393702--1393764	33	1.9	32	87	3	90	33	20	15	30	1.94
1393819--1393883	33	2.0	32	91	8	105	40	16	12	30	1.86
1396055--1396082	13	2.2	13	100	0	56	39	17	14	28	1.89
1396037--1396102	33	2.0	33	88	5	98	40	13	15	30	1.85
1396524--1396578	19	2.8	19	83	2	65	34	20	14	30	1.92
1396564--1396590	13	2.1	13	100	0	54	40	14	14	29	1.86
1399911--1399967	19	2.9	19	89	5	78	35	17	17	29	1.93
1399952--1399978	13	2.1	13	100	0	54	40	14	14	29	1.86
1399933--1399997	32	2.0	32	90	3	103	40	16	16	26	1.90
1400521--1400597	37	2.1	37	95	0	136	37	29	2	29	1.71
1402282--1402324	20	2.1	20	83	12	52	53	0	20	25	1.46
1408535--1408561	13	2.1	13	100	0	54	40	14	14	29	1.86
1408516--1408580	32	2.0	32	90	3	103	40	16	16	26	1.90
1408921--1409461	39	11.8	46	69	16	277	29	18	26	25	1.98
1408921--1409282	144	2.5	143	80	7	376	29	18	27	24	1.98
1409287--1409448	48	3.6	47	73	14	160	30	19	25	24	1.98
1409171--1409408	126	1.9	127	88	0	361	28	20	25	25	1.99
1409249--1409461	87	2.4	87	85	0	291	28	19	25	26	1.99
1409483--1409607	57	2.2	57	84	5	153	16	17	32	32	1.93
1409483--1409607	29	4.3	30	80	7	132	16	17	32	32	1.93
1409616--1409698	27	3.1	27	91	0	121	32	14	30	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409675--1409791	34	3.4	34	81	4	146	38	12	27	21	1.90
1409668--1409833	68	2.5	67	88	2	228	37	12	28	21	1.90
1409835--1410112	30	9.0	30	76	8	236	32	14	29	23	1.94
1409864--1410110	61	4.0	63	80	7	245	33	14	27	24	1.94
1409835--1410110	94	3.0	92	82	8	303	32	14	28	23	1.94
1409828--1410115	124	2.3	124	81	3	328	33	13	29	23	1.93
1411395--1411444	6	7.4	7	88	11	70	0	0	14	86	0.58
1411389--1411434	6	7.8	6	83	11	60	0	0	13	86	0.56
1411387--1411435	19	2.6	19	90	0	80	0	0	12	87	0.54
1411387--1411444	13	4.4	13	86	2	80	0	0	13	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22