genome.fa.s446.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  3  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287223--287293	20	3.5	20	80	0	79	40	12	14	32	1.83
287939--288013	32	2.5	29	80	6	78	8	21	6	64	1.44
289198--289240	20	2.1	20	82	4	50	44	13	16	25	1.85
291131--291155	13	1.9	13	100	0	50	36	16	16	32	1.90
291110--291182	32	2.3	32	92	0	119	32	12	17	36	1.87
291199--291240	21	2.0	21	100	0	84	42	9	19	28	1.82
291227--291252	13	2.0	13	100	0	52	30	15	15	38	1.88
293616--293870	79	3.2	79	90	0	375	25	29	16	28	1.97
306250--306302	1	53.0	1	80	0	61	90	5	1	1	0.58
307274--308594	61	22.4	60	81	7	1282	25	28	20	25	1.99
307278--308555	122	10.8	122	84	6	1529	25	28	20	25	1.99
308910--308982	32	2.3	32	92	0	119	34	12	16	36	1.86
308999--309040	21	2.0	21	95	0	75	45	9	19	26	1.80
309027--309052	13	2.0	13	100	0	52	30	15	15	38	1.88
312064--312192	52	2.5	52	93	0	213	31	17	16	34	1.92
312064--312212	52	2.9	51	86	4	201	32	16	16	33	1.92
312201--312225	13	1.9	13	100	0	50	36	16	16	32	1.90
312266--312332	33	2.0	33	88	0	98	40	14	11	32	1.83
312288--312312	13	1.9	13	100	0	50	32	16	16	36	1.90
313223--313337	49	2.2	51	78	12	126	36	15	23	24	1.94
313113--313674	169	3.3	170	83	5	722	37	13	24	24	1.92
313679--314089	43	8.9	44	80	12	454	30	18	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313628--314089	92	5.0	92	92	2	746	30	17	25	25	1.98
314092--314161	32	2.2	31	95	5	131	18	17	35	28	1.93
314169--314730	34	17.1	34	78	12	477	33	12	33	20	1.90
314169--314722	95	5.7	94	81	9	526	33	12	33	20	1.90
314523--314731	71	3.0	69	86	4	253	34	11	33	19	1.88
318608--318735	47	2.7	46	83	7	134	32	10	20	36	1.86
319701--319739	19	2.2	17	86	9	51	0	23	2	74	0.94
320385--320425	22	1.9	22	90	5	66	51	0	0	48	1.00
324624--324648	5	5.0	5	100	0	50	20	0	0	80	0.72
324784--324846	31	2.1	30	82	11	76	47	0	0	52	1.00
325230--325269	20	2.0	20	90	4	64	50	7	10	32	1.64
325354--325437	30	2.8	30	77	12	84	35	1	1	61	1.11
325418--325511	27	3.5	26	72	21	77	36	1	0	62	1.02
325420--325521	51	2.0	53	83	14	133	36	0	0	62	1.02
325445--325521	11	7.5	11	68	22	51	35	1	0	63	1.03
325995--326043	25	1.9	26	83	4	64	51	0	2	46	1.12
326153--326208	18	3.3	18	75	12	64	30	3	7	58	1.42
326340--326421	15	5.3	15	70	21	53	39	7	2	51	1.43
326411--326443	6	5.8	6	92	7	52	51	0	0	48	1.00
327048--327135	32	2.7	34	77	12	94	51	6	0	42	1.28
330071--330123	18	2.9	18	85	0	70	5	35	11	47	1.63
330096--330138	21	2.0	21	90	0	68	4	32	13	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330104--330147	21	2.1	21	82	0	52	6	34	13	45	1.70
330336--330365	2	15.0	2	100	0	60	50	0	0	50	1.00
330584--330631	24	2.0	24	88	11	73	33	0	0	66	0.92
330584--330631	23	2.0	23	88	11	71	33	0	0	66	0.92
330831--330920	23	3.8	23	76	10	83	41	2	14	42	1.58
333719--333769	23	2.2	23	85	0	66	27	11	35	25	1.91
337136--337190	22	2.4	23	81	6	58	38	0	0	61	0.96
339160--339231	24	2.9	24	81	6	81	43	23	9	23	1.83
343583--343659	24	3.1	24	81	7	82	45	24	9	20	1.80
343585--343660	27	2.9	27	82	5	86	44	25	9	21	1.81
349171--349376	50	4.1	50	83	0	250	32	17	16	33	1.93
351093--351185	42	2.2	42	96	0	168	41	11	21	24	1.87
352959--353025	3	22.7	3	93	3	118	29	0	1	68	0.98
353436--353469	17	2.0	17	88	11	52	26	2	0	70	1.01
353902--353947	11	4.1	11	76	23	51	41	0	0	58	0.98
353868--353947	33	2.4	33	87	6	108	43	0	1	55	1.08
353906--353947	21	2.0	21	86	13	61	40	0	0	59	0.97
361725--361759	3	11.7	3	93	0	61	31	31	0	37	1.58
363501--364254	164	4.6	163	78	9	683	29	9	9	51	1.65
363550--364168	166	3.8	165	81	6	700	30	8	9	52	1.63
363638--364332	328	2.1	328	79	6	730	30	8	9	51	1.64
364820--364870	12	4.2	12	85	7	68	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364826--364871	11	4.0	11	86	8	65	73	0	26	0	0.83
369119--369168	26	1.9	26	91	0	82	32	14	4	50	1.61
370506--370539	15	2.3	15	90	10	52	82	0	2	14	0.79
370726--370776	23	2.2	23	89	0	75	27	9	37	25	1.87
373090--373133	2	22.0	2	100	0	88	50	0	0	50	1.00
373861--373886	2	13.0	2	100	0	52	50	0	0	50	1.00
373886--373943	29	2.0	28	90	3	89	20	10	18	50	1.76
373886--373943	14	4.1	14	88	4	89	20	10	18	50	1.76
374677--374730	21	2.4	23	81	9	67	37	0	0	62	0.95
374677--374736	23	2.6	22	82	15	68	38	0	0	61	0.96
378580--378646	33	2.0	33	88	0	98	34	11	13	40	1.81
378600--378624	13	1.9	13	100	0	50	36	16	16	32	1.90
378687--378711	13	1.9	13	100	0	50	32	16	16	36	1.90
378700--378840	52	2.7	52	91	2	230	33	17	17	31	1.94
387114--387206	28	3.1	28	71	16	96	22	30	12	34	1.92
387084--387941	70	12.4	70	83	8	971	20	33	12	33	1.90
387156--387979	282	3.0	282	96	1	1486	20	33	12	33	1.90
387087--387948	141	6.2	138	84	7	1065	20	33	12	33	1.90
387176--387961	104	7.5	103	77	13	499	20	33	12	33	1.90
388015--388803	49	15.8	49	87	3	1024	24	26	16	32	1.97
389675--389741	33	2.0	33	88	0	98	34	11	13	40	1.81
389695--389719	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389782--389806	13	1.9	13	100	0	50	32	16	16	36	1.90
389795--389935	52	2.7	52	91	2	230	33	17	17	31	1.94
395822--395893	27	2.8	25	83	6	83	45	25	6	22	1.77
397137--397200	14	4.4	15	67	13	53	46	9	0	43	1.35
401405--401610	50	4.1	50	80	0	205	33	17	16	32	1.92
405941--406179	50	4.8	50	85	0	307	30	17	17	34	1.93
407599--407650	3	17.7	3	92	4	88	28	0	1	69	0.99
408059--408092	17	2.0	17	88	11	52	26	2	0	70	1.01
408521--408566	11	4.1	11	76	23	51	41	0	0	58	0.98
408487--408566	33	2.4	33	87	6	108	43	0	1	55	1.08
408525--408566	21	2.0	21	86	13	61	40	0	0	59	0.97
415426--415664	50	4.8	50	85	0	307	30	17	17	34	1.93
417082--417142	3	20.7	3	89	3	97	29	1	1	67	1.10
417551--417584	17	2.0	17	88	11	52	26	2	0	70	1.01
418013--418058	11	4.1	11	76	23	51	41	0	0	58	0.98
417979--418058	33	2.4	33	87	6	108	43	0	1	55	1.08
418017--418058	21	2.0	21	86	13	61	40	0	0	59	0.97
424911--425149	50	4.8	50	85	0	307	30	17	17	34	1.93
426569--426629	3	20.7	3	93	3	106	29	0	1	68	0.99
427038--427071	17	2.0	17	88	11	52	26	2	0	70	1.01
427499--427544	11	4.1	11	76	23	51	41	0	0	58	0.98
427465--427544	33	2.4	33	87	6	108	43	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427503--427544	21	2.0	21	86	13	61	40	0	0	59	0.97
437147--437835	166	4.2	162	77	9	612	29	9	8	52	1.63
438328--438370	22	2.0	22	86	9	61	72	0	18	9	1.11
438474--438518	12	3.8	12	85	5	65	73	0	26	0	0.84
438474--438519	11	4.0	11	86	8	65	73	0	26	0	0.83
442120--442169	26	1.9	26	87	0	73	34	14	2	50	1.54
444739--444814	37	2.0	37	85	10	100	47	1	1	50	1.18
444763--444836	37	2.0	37	86	5	105	50	1	0	48	1.09
445344--445394	23	2.2	23	85	0	66	27	11	35	25	1.91
447724--447749	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22