genome.fa.s446.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  22  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3476604--3479359	476	5.8	475	81	5	1947	35	12	19	32	1.90
3479119--3480396	476	2.7	474	84	2	1600	34	12	19	32	1.90
3479180--3480626	476	3.0	475	80	4	1165	34	12	19	33	1.89
3479614--3481187	791	2.0	792	85	3	2139	34	12	19	32	1.90
3480386--3481663	476	2.7	475	86	2	1726	34	12	19	32	1.90
3480125--3490750	159	67.1	156	64	14	1077	34	12	19	32	1.90
3480881--3482451	788	2.0	791	85	2	2165	34	12	19	32	1.90
3482920--3484197	476	2.7	474	85	2	1695	34	12	19	32	1.90
3483415--3484985	788	2.0	791	86	2	2174	34	12	19	32	1.90
3485454--3486731	476	2.7	475	86	1	1740	34	12	20	32	1.90
3485949--3487519	788	2.0	791	86	2	2192	34	12	19	32	1.90
3487988--3489265	476	2.7	475	86	2	1733	34	12	20	32	1.90
3488483--3490053	788	2.0	791	86	2	2174	34	12	19	32	1.90
3476606--3505171	475	60.3	471	76	10	10827	34	13	19	32	1.90
3492489--3505171	477	26.7	476	84	2	15800	34	13	19	32	1.91
3497941--3499108	159	7.4	156	67	16	398	32	13	20	32	1.92
3505178--3510370	475	10.9	476	83	4	5833	34	13	19	32	1.91
3506688--3506743	27	2.1	27	100	0	112	32	25	14	28	1.94
3507055--3510101	159	19.3	157	64	15	512	34	13	19	32	1.91
3511228--3511253	13	2.0	13	100	0	52	38	15	15	30	1.88
3512840--3512870	15	2.1	15	93	0	53	48	19	19	12	1.81
3517526--3517551	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3518313--3567220	475	103.3	469	80	7	36571	34	13	19	32	1.91
3518313--3567220	947	51.7	947	86	5	41341	34	13	19	32	1.91
3528596--3528754	81	2.0	81	98	0	309	28	11	25	34	1.90
3535672--3536008	164	2.1	164	94	0	611	37	14	18	29	1.91
3535843--3543774	474	16.8	466	83	4	9048	35	14	18	31	1.91
3535843--3543774	941	8.4	937	85	3	10136	35	14	18	31	1.91
3549297--3549934	157	4.1	156	63	19	361	34	15	18	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22

The End!