genome.fa.s446.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Length:  3567220

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  5  of  22  ( 2549 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600496--600547	16	3.2	16	77	0	59	32	9	15	42	1.79
605948--606078	63	2.1	63	97	0	244	28	17	13	40	1.88
606563--606604	16	2.5	17	80	3	50	47	2	0	50	1.14
608019--608051	10	3.5	10	88	12	52	33	0	0	66	0.92
609914--610526	156	3.9	155	76	7	535	27	13	17	41	1.87
609811--610561	156	4.8	155	73	12	516	27	13	17	40	1.88
613727--613781	19	2.8	19	78	8	65	32	14	12	40	1.84
618208--618232	13	1.9	13	100	0	50	36	16	16	32	1.90
618187--618251	33	2.0	32	90	3	103	32	15	15	36	1.89
618221--618274	19	2.8	19	89	10	83	31	14	18	35	1.91
618221--618273	20	2.7	20	91	8	83	30	15	18	35	1.92
618319--618348	13	2.3	13	94	0	51	43	16	6	33	1.74
618302--618369	33	2.1	33	91	0	109	36	14	14	33	1.87
618332--618391	20	2.8	21	90	7	86	36	15	15	33	1.88
618188--618488	119	2.6	118	86	6	400	32	16	17	32	1.93
618421--618487	20	3.7	19	70	29	58	34	13	17	34	1.89
620080--620115	3	12.0	3	93	0	63	36	0	33	30	1.58
626575--626619	22	2.0	23	86	4	65	35	4	20	40	1.72
627267--627335	33	2.1	33	86	0	93	31	11	17	39	1.85
627286--627313	13	2.2	13	100	0	56	32	7	14	46	1.71
628523--628560	20	1.9	20	94	0	67	42	13	13	31	1.82
629350--629382	11	2.8	12	86	9	50	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629271--629447	80	2.2	84	85	9	240	52	2	2	42	1.26
630912--630938	2	13.5	2	100	0	54	48	0	0	51	1.00
632403--632453	19	2.7	19	96	0	93	31	13	17	37	1.89
634671--634722	27	2.0	26	82	10	63	23	42	17	17	1.89
638063--638109	23	2.0	23	100	0	94	48	17	25	8	1.74
640096--640143	16	3.1	16	80	20	57	70	10	14	4	1.29
641485--641844	27	13.1	27	88	2	452	25	32	13	29	1.93
641458--642890	28	50.5	28	85	5	1307	29	30	15	24	1.96
642389--642577	32	6.1	32	87	3	244	32	31	16	19	1.95
642850--642917	29	2.3	29	84	2	82	33	30	14	20	1.93
642974--643186	48	4.5	47	85	2	207	19	26	18	35	1.95
643008--643186	95	1.9	95	92	0	304	18	27	17	35	1.94
643008--643186	48	3.8	48	88	1	270	18	27	17	35	1.94
647442--647476	17	2.0	18	88	5	54	54	0	0	45	0.99
647966--648001	16	2.2	16	90	0	54	25	2	11	61	1.43
648033--648092	16	3.6	16	75	20	61	43	0	0	56	0.99
648029--648090	21	2.9	22	81	13	69	43	0	0	56	0.99
648029--648086	22	2.8	21	85	12	75	44	0	0	55	0.99
648393--648426	16	2.1	16	89	10	52	26	0	0	73	0.83
648490--648653	84	2.0	83	81	12	194	50	3	1	44	1.30
648773--648804	14	2.1	16	88	11	50	56	6	0	37	1.25
648824--648853	15	2.0	15	100	0	60	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650504--650572	20	3.4	20	76	4	66	57	1	1	39	1.16
650507--650572	21	3.2	21	80	6	64	57	1	1	39	1.17
651056--651090	16	2.2	16	89	0	52	25	2	8	62	1.38
651742--651797	23	2.4	23	82	5	69	53	5	1	39	1.34
651748--651861	53	2.1	53	80	9	122	48	6	0	44	1.33
652640--652692	21	2.6	21	83	13	67	54	1	0	43	1.11
653172--653225	17	3.2	17	79	12	58	25	3	9	61	1.43
653166--653208	15	2.8	16	80	13	54	27	2	9	60	1.40
653166--653225	32	1.9	31	86	3	84	28	3	8	60	1.42
658833--658894	31	2.0	31	96	0	115	14	19	20	45	1.85
665469--665517	5	10.4	5	76	12	50	34	0	0	65	0.93
665466--665517	19	2.8	18	80	5	68	32	0	0	67	0.91
665463--665523	32	1.9	31	90	3	95	32	1	0	65	1.02
670219--670244	12	2.2	12	100	0	52	61	7	0	30	1.24
670973--671032	10	5.8	10	75	13	59	71	5	0	23	1.05
673107--673165	3	19.7	3	96	0	100	32	3	0	64	1.10
675272--675402	51	2.5	51	86	3	174	31	11	10	46	1.74
680152--680199	24	2.0	24	84	15	64	31	29	8	31	1.87
687212--687835	29	21.2	29	76	7	462	27	27	11	33	1.91
687212--687836	88	7.1	86	76	7	407	27	27	11	33	1.91
687216--687835	59	10.6	58	77	7	484	27	27	11	33	1.91
687269--687831	117	4.8	115	76	7	420	26	28	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690995--691111	20	5.8	20	86	6	148	40	10	15	34	1.81
690997--691111	60	1.9	60	96	0	212	40	10	14	34	1.81
691076--691171	50	1.9	50	93	0	165	39	13	17	29	1.88
691661--691751	31	2.9	31	81	0	110	27	26	19	26	1.99
691796--691945	58	2.6	58	78	2	174	26	25	14	34	1.94
691899--692426	53	10.1	52	76	6	438	25	23	15	35	1.94
693332--693404	21	3.5	20	83	7	85	36	10	20	31	1.87
693441--693578	51	2.7	51	85	1	168	31	13	11	43	1.80
698653--698725	20	3.7	20	92	3	112	41	15	15	28	1.87
698714--698807	40	2.3	40	100	0	188	21	17	23	38	1.93
698793--698818	13	2.0	13	100	0	52	30	15	15	38	1.88
703874--703918	13	3.4	13	77	17	56	57	2	2	37	1.23
703873--703921	14	3.6	14	78	13	57	59	2	2	36	1.21
704456--704507	20	2.6	19	76	8	50	48	1	1	48	1.24
705114--705138	13	1.9	13	100	0	50	48	8	8	36	1.62
706415--706662	87	2.8	89	82	6	290	42	7	14	35	1.74
706608--706736	62	2.1	62	98	1	251	43	4	14	37	1.67
719494--719555	1	62.0	1	80	0	61	88	4	6	0	0.62
719492--719556	33	2.0	32	91	5	105	84	4	10	0	0.75
722625--722671	20	2.4	20	89	3	69	40	19	14	25	1.90
722622--722671	19	2.6	19	87	3	73	38	18	16	28	1.91
723458--723563	54	2.0	54	96	0	194	37	18	2	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725925--725984	30	1.9	31	86	10	86	28	15	10	46	1.77
725940--726054	51	2.3	50	93	1	194	29	14	10	45	1.79
733885--733945	19	3.1	19	71	13	52	29	9	13	47	1.74
737318--737428	51	2.2	51	90	1	179	27	14	12	45	1.81
744746--745113	30	12.0	30	84	6	454	22	30	17	29	1.96
744746--745179	61	7.1	60	81	7	446	22	30	16	30	1.96
744745--745176	153	2.8	152	86	4	577	22	31	16	29	1.96
744746--745179	30	14.2	30	82	6	444	22	30	16	30	1.96
745120--746026	28	31.0	28	78	12	810	23	35	13	27	1.93
745118--746099	235	4.1	235	89	2	1391	22	34	13	29	1.92
746003--746227	34	6.7	34	81	4	244	17	31	12	38	1.87
746000--746227	66	3.4	67	80	6	257	17	32	12	38	1.86
746003--746231	100	2.3	100	83	3	273	17	31	12	38	1.86
746335--746583	39	5.9	39	73	16	192	26	27	19	26	1.99
746374--746838	49	9.8	49	70	13	283	24	26	18	30	1.98
746287--746632	88	4.0	87	88	1	494	26	26	19	28	1.99
746287--746632	175	2.0	175	90	0	548	26	26	19	28	1.99
746544--746784	101	2.4	101	81	4	263	23	27	19	30	1.98
746559--746834	52	5.6	48	72	12	175	22	26	18	31	1.97
758420--758466	17	2.7	17	83	3	58	80	10	0	8	0.89
759773--760073	28	10.5	28	76	7	257	29	27	15	27	1.96
759773--760042	56	4.8	56	84	5	285	29	26	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761354--761427	20	3.7	19	80	7	67	37	14	9	37	1.79
761441--761478	20	1.9	20	94	0	67	44	7	13	34	1.72
763699--763723	13	1.9	13	100	0	50	36	16	16	32	1.90
763676--763743	33	2.1	33	91	2	111	32	13	19	35	1.90
763775--763829	20	2.7	20	83	8	67	29	16	14	40	1.88
763849--763889	20	2.0	20	90	0	64	29	12	19	39	1.88
766293--766328	13	2.8	13	91	0	54	38	19	11	30	1.86
766531--766555	8	3.1	8	100	0	50	64	24	0	12	1.27
772500--772524	13	1.9	13	100	0	50	36	16	16	32	1.90
772477--772544	33	2.1	33	91	2	111	32	13	19	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22