genome.fa.s51.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  11  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1556786--1557159	139	2.6	139	80	5	410	37	9	9	43	1.71
1557491--1557872	155	2.5	154	78	3	390	26	15	20	37	1.92
1559625--1559668	19	2.3	19	96	0	79	27	29	9	34	1.87
1562439--1562508	36	1.9	36	100	0	140	48	5	31	14	1.67
1562523--1562564	22	1.9	22	95	0	75	26	0	30	42	1.55
1563116--1563140	13	1.9	13	100	0	50	32	16	16	36	1.90
1569813--1570013	30	6.4	30	74	15	90	24	21	13	39	1.90
1569814--1570006	65	3.0	63	76	9	185	24	21	13	40	1.89
1569812--1570186	33	11.8	32	71	16	169	24	24	13	38	1.91
1569973--1570238	61	4.3	60	73	12	207	22	27	12	36	1.91
1570106--1570212	27	3.7	27	73	16	97	24	33	15	26	1.95
1569978--1570239	94	2.8	92	74	15	248	23	28	12	35	1.92
1570251--1570712	32	14.3	32	79	7	434	30	31	18	19	1.96
1570247--1570700	65	7.0	64	80	5	425	30	31	18	20	1.96
1570251--1570700	97	4.6	97	83	3	503	30	30	18	20	1.96
1570640--1570712	33	2.2	32	86	11	96	36	36	16	9	1.81
1570789--1570949	51	3.1	50	78	8	153	23	22	14	39	1.91
1570852--1571120	113	2.4	113	77	3	274	26	21	13	38	1.91
1571004--1571125	61	2.0	61	90	0	190	25	24	11	38	1.89
1571009--1571142	61	2.2	61	84	0	178	26	23	11	38	1.89
1571040--1571281	61	4.0	62	80	6	228	23	24	14	38	1.92
1577826--1578080	61	4.3	59	81	10	272	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577851--1578079	122	1.9	121	89	4	354	26	27	20	24	1.99
1578063--1578197	42	3.1	42	78	9	121	17	26	15	40	1.89
1578105--1578320	119	1.8	117	79	9	251	20	24	14	40	1.90
1578216--1578303	42	2.0	43	80	8	99	18	25	12	44	1.84
1578935--1578960	13	2.0	13	100	0	52	30	15	15	38	1.88
1578998--1579085	20	4.8	19	76	21	89	28	15	13	42	1.86
1578998--1579065	33	2.1	33	91	5	111	26	16	14	42	1.86
1579016--1579046	13	2.4	13	100	0	62	29	16	16	38	1.90
1581386--1581668	79	3.6	79	84	4	360	26	22	15	35	1.94
1583628--1583815	93	2.0	93	97	2	360	50	17	9	23	1.75
1587199--1587225	13	2.1	13	100	0	54	40	14	14	29	1.86
1593406--1593474	33	2.1	33	86	5	95	36	20	11	31	1.88
1593503--1593558	19	2.9	19	91	2	85	35	17	16	30	1.92
1593543--1593569	13	2.1	13	100	0	54	40	14	14	29	1.86
1593890--1593934	20	2.3	21	88	11	69	40	17	22	20	1.92
1594840--1594895	21	2.8	20	86	10	78	44	10	16	28	1.80
1594943--1594997	20	2.7	20	85	2	65	30	18	12	38	1.88
1596034--1596346	166	1.9	167	80	6	375	50	7	9	31	1.64
1596649--1597446	408	2.0	408	94	0	1409	38	11	13	36	1.80
1597839--1598430	85	7.0	85	80	4	561	45	13	21	19	1.84
1597865--1598449	169	3.4	167	79	7	615	45	12	22	19	1.84
1597950--1598430	254	1.9	255	82	5	607	46	13	21	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1599232--1599280	20	2.4	21	86	3	64	44	6	16	32	1.72
1599353--1599395	21	2.0	21	86	8	61	23	11	16	48	1.78
1600316--1600354	21	1.9	20	84	5	51	23	17	10	48	1.78
1604781--1604834	19	2.8	20	82	5	74	35	12	20	31	1.90
1609909--1609979	33	2.2	33	89	0	106	26	19	12	40	1.88
1609909--1609995	33	2.6	33	83	0	102	27	19	13	39	1.90
1609976--1610029	28	2.0	28	85	3	74	27	24	12	35	1.92
1610004--1610159	34	4.7	34	74	7	149	25	26	11	36	1.90
1610001--1610241	66	3.8	65	74	12	177	24	28	12	34	1.91
1610137--1610213	27	2.8	28	92	5	131	25	37	14	22	1.92
1610000--1610234	33	7.5	32	74	12	159	25	28	11	34	1.90
1610248--1610448	32	6.2	32	90	4	289	30	36	16	16	1.91
1610248--1610689	64	7.1	64	80	10	454	29	35	17	18	1.93
1610449--1610689	32	7.5	32	80	6	256	28	33	17	19	1.95
1610332--1610565	117	2.0	117	87	3	337	29	35	16	18	1.93
1610449--1610670	65	3.5	64	82	9	265	28	34	17	19	1.95
1610268--1610617	182	1.9	181	88	1	531	28	35	17	18	1.94
1610778--1611028	52	4.7	52	71	10	173	25	23	13	37	1.92
1610825--1611040	113	1.9	113	86	0	306	25	24	13	37	1.92
1610977--1611197	61	3.6	60	78	10	184	25	24	11	37	1.90
1610832--1611073	113	2.1	113	82	3	281	26	23	14	35	1.93
1611096--1611215	61	2.0	61	84	0	159	25	27	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611867--1611920	20	2.6	22	77	8	60	44	9	12	33	1.75
1618508--1618841	140	2.4	141	79	4	350	42	9	11	36	1.74
1621900--1621943	20	2.3	18	85	14	61	40	18	20	20	1.91
1623784--1623848	33	2.0	32	87	3	94	38	10	12	38	1.78
1627483--1627610	52	2.5	52	100	0	256	36	31	14	17	1.90
1630626--1630868	133	1.8	134	87	4	357	42	11	10	35	1.75
1631795--1631840	19	2.4	19	82	17	67	0	17	0	82	0.67
1631795--1631842	10	4.9	10	87	5	71	0	18	0	81	0.70
1635626--1635975	66	5.3	67	74	5	250	18	23	17	40	1.91
1636085--1636238	64	2.4	67	83	9	194	20	20	14	44	1.86
1641721--1641807	29	3.0	29	94	3	149	27	29	9	33	1.88
1642482--1642549	31	2.2	31	89	0	100	13	25	32	29	1.93
1642638--1642763	31	4.1	31	79	2	110	19	23	27	29	1.98
1642578--1642928	180	1.9	178	86	4	490	21	23	24	30	1.99
1642861--1642932	31	2.3	31	78	0	81	19	26	26	27	1.99
1643739--1643772	10	3.4	10	95	0	59	23	2	38	35	1.70
1644028--1644084	13	3.9	13	76	24	60	35	14	17	33	1.90
1644008--1644108	32	3.1	32	95	1	175	35	11	16	35	1.86
1644006--1644103	19	5.8	18	70	28	81	34	12	16	36	1.86
1644146--1644173	13	2.2	13	100	0	56	28	14	17	39	1.89
1644179--1644305	52	2.5	51	94	2	220	34	17	18	29	1.94
1650882--1650907	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650946--1651021	21	3.7	21	80	3	100	28	17	11	42	1.84
1650967--1651039	20	3.6	20	81	3	101	31	19	13	35	1.91
1650946--1651039	41	2.3	41	98	0	179	29	18	12	39	1.88
1653496--1653534	13	3.0	13	96	0	69	35	15	17	30	1.91
1653520--1653598	20	3.7	20	75	18	70	45	15	13	25	1.83
1655613--1655643	15	2.1	15	93	0	53	12	22	16	48	1.80
1659707--1659732	13	2.0	13	100	0	52	30	15	15	38	1.88
1659793--1659865	20	3.6	20	81	3	101	31	19	13	35	1.91
1659771--1659865	41	2.3	42	96	1	174	29	17	12	40	1.87
1675622--1675675	20	2.6	21	80	11	58	35	20	7	37	1.81
1675643--1675693	20	2.5	20	87	9	68	31	19	9	39	1.84
1678321--1678384	32	2.0	33	87	9	96	29	15	17	37	1.91
1678433--1678483	20	2.5	21	90	6	79	37	11	17	33	1.86
1680541--1680593	21	2.5	22	75	6	63	60	1	22	15	1.44
1687161--1687211	11	4.5	11	83	11	68	82	17	0	0	0.67
1687159--1687210	23	2.3	23	87	12	72	80	19	0	0	0.71
1687163--1687211	26	1.9	25	84	12	64	81	18	0	0	0.69
1688488--1688786	31	9.7	31	77	14	271	24	28	16	30	1.96
1688488--1688754	92	2.9	90	84	7	344	25	28	16	29	1.97
1688483--1688754	60	4.5	59	80	9	289	24	29	16	29	1.97
1688735--1689397	34	20.7	32	75	14	444	21	31	12	34	1.90
1688892--1689173	27	9.2	27	73	21	168	20	31	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1688823--1689408	94	6.2	93	76	16	504	21	32	11	34	1.89
1688823--1689408	162	3.7	154	80	10	637	21	32	11	34	1.89
1688953--1689275	61	5.1	61	82	9	328	20	31	11	36	1.88
1688668--1689336	95	7.0	95	78	12	483	21	31	12	34	1.90
1689276--1689335	27	2.2	27	88	5	86	23	35	11	30	1.90
1689243--1689369	60	2.1	61	89	4	195	22	36	9	31	1.86
1689468--1689536	21	3.2	20	67	25	52	26	27	17	28	1.97
1689400--1690238	49	17.8	46	74	12	447	25	25	18	30	1.98
1689401--1689706	87	3.5	87	87	2	405	26	26	18	28	1.98
1689552--1689745	39	4.7	39	78	13	192	25	28	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23