genome.fa.s51.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  9  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1230355--1230422	33	2.1	32	91	2	109	33	13	16	36	1.87
1230377--1230402	13	2.0	13	100	0	52	38	15	15	30	1.88
1236403--1236680	135	2.0	138	90	4	445	34	12	10	41	1.78
1238236--1238322	13	5.8	13	70	27	57	35	16	17	31	1.92
1238246--1238308	19	3.7	18	76	24	73	33	14	19	33	1.91
1238236--1238325	32	2.8	32	94	1	155	35	15	17	31	1.92
1245347--1245385	21	1.9	20	84	5	51	76	23	0	0	0.78
1246640--1247054	34	12.7	33	79	11	376	20	33	11	34	1.89
1246734--1246989	61	4.1	61	81	10	293	19	33	12	34	1.89
1246768--1246820	27	2.0	27	92	0	88	24	35	15	24	1.94
1246699--1246894	94	2.1	96	82	5	238	20	31	12	35	1.90
1246774--1246860	27	3.0	27	72	18	75	22	33	12	31	1.92
1246896--1246955	27	2.2	27	90	0	93	21	33	11	33	1.90
1246640--1246955	162	2.0	156	86	4	438	21	31	11	35	1.89
1246794--1247023	95	2.4	95	81	7	248	19	33	10	35	1.87
1247097--1247234	51	2.7	53	80	7	158	23	28	15	32	1.95
1247208--1247584	39	9.0	39	72	15	270	27	25	20	27	1.99
1247156--1247371	87	2.4	92	86	3	298	25	26	19	28	1.99
1247338--1247632	87	3.4	87	89	0	448	26	25	19	28	1.99
1247208--1247498	126	2.3	126	90	0	474	27	26	20	26	1.99
1247554--1248076	49	10.6	49	77	5	462	24	25	17	32	1.97
1247554--1248068	101	5.2	98	84	4	579	24	25	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1247554--1248068	199	2.6	197	83	4	619	24	25	18	32	1.97
1248696--1248734	21	1.9	20	94	5	69	35	15	12	35	1.86
1248771--1248835	19	3.8	18	71	24	68	35	12	18	33	1.88
1248772--1248847	32	2.4	32	93	0	125	34	14	18	32	1.91
1253872--1253909	13	2.9	14	88	7	53	28	10	15	44	1.80
1254922--1255012	31	2.9	31	82	9	114	17	20	34	27	1.95
1254923--1255042	31	3.8	30	75	13	100	17	20	32	29	1.96
1255061--1255121	27	2.3	27	85	0	86	37	13	29	19	1.90
1255103--1255187	34	2.5	35	83	7	111	41	11	27	20	1.87
1255157--1255210	27	2.0	27	88	0	81	31	14	31	22	1.94
1255225--1255299	33	2.4	31	93	6	125	29	14	36	20	1.92
1258969--1259127	85	1.9	84	79	6	178	35	20	11	32	1.89
1259047--1259313	102	2.6	100	77	8	225	37	20	11	29	1.89
1259481--1259719	56	4.3	55	80	3	239	27	26	15	30	1.96
1259505--1259712	112	1.9	112	82	6	269	28	26	15	29	1.96
1261375--1261433	32	1.9	30	83	13	75	59	10	10	20	1.58
1261713--1261739	13	2.1	13	100	0	54	29	14	14	40	1.86
1264252--1264276	13	1.9	13	100	0	50	32	16	16	36	1.90
1266359--1266389	15	2.1	15	93	0	53	12	22	16	48	1.80
1270123--1270181	32	1.9	30	83	13	75	59	10	10	20	1.58
1270461--1270486	13	2.0	13	100	0	52	30	15	15	38	1.88
1271442--1271472	14	2.2	14	94	0	53	9	12	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1271931--1272024	44	2.1	44	100	0	188	23	21	4	51	1.65
1277514--1277622	38	2.9	37	75	5	110	31	7	13	47	1.70
1278818--1278857	21	1.9	21	85	10	55	62	0	0	37	0.95
1279033--1279081	22	2.2	22	85	0	62	57	4	12	26	1.53
1279153--1279203	5	10.2	5	77	14	52	33	0	0	66	0.92
1279169--1279218	24	2.1	24	81	7	57	28	2	2	68	1.12
1282320--1282371	23	2.3	23	96	0	95	48	7	11	32	1.68
1283174--1283222	2	24.5	2	95	0	89	51	2	0	46	1.12
1283647--1283679	17	1.9	17	100	0	66	36	12	15	36	1.84
1283947--1283992	22	2.1	22	84	8	58	43	6	8	41	1.61
1287873--1287898	13	2.0	13	100	0	52	38	15	15	30	1.88
1287855--1287918	33	2.0	32	87	3	92	39	18	14	28	1.90
1293960--1293993	13	2.6	13	95	0	59	32	17	17	32	1.94
1296191--1296230	20	2.1	19	90	4	62	40	22	10	27	1.86
1296332--1296357	13	2.0	13	100	0	52	38	7	15	38	1.76
1296314--1296377	33	2.0	32	84	3	83	39	15	15	29	1.89
1300174--1300199	13	2.0	13	100	0	52	38	15	15	30	1.88
1300156--1300218	32	2.0	32	87	6	92	39	17	14	28	1.89
1306353--1306390	13	2.9	13	96	0	67	31	15	18	34	1.92
1306835--1306875	20	2.0	21	85	9	57	19	48	26	4	1.69
1308634--1308673	20	2.1	19	90	4	62	40	22	10	27	1.86
1308776--1308801	13	2.0	13	100	0	52	38	7	15	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308758--1308821	33	2.0	32	84	3	83	39	15	15	29	1.89
1312018--1312074	21	2.8	20	81	5	69	40	15	14	29	1.87
1312062--1312198	53	2.6	53	95	1	238	37	18	18	25	1.94
1312289--1312327	13	3.0	13	92	0	69	30	15	17	35	1.91
1316089--1316113	13	1.9	13	100	0	50	36	16	16	32	1.90
1316935--1316995	30	2.0	30	100	0	122	37	6	29	26	1.81
1317787--1317827	21	2.0	21	85	9	57	39	12	9	39	1.76
1317864--1317920	21	2.8	20	81	5	69	40	15	14	29	1.87
1317908--1318044	53	2.6	53	92	3	222	38	18	17	25	1.92
1318135--1318159	13	1.9	13	100	0	50	32	16	20	32	1.94
1325709--1325876	84	2.0	85	84	3	223	39	13	9	37	1.77
1328675--1328747	20	3.7	19	83	7	76	39	17	13	28	1.88
1328675--1328728	19	2.8	20	85	2	74	38	18	12	29	1.88
1331066--1331105	20	2.0	21	85	14	57	42	0	25	32	1.55
1331066--1331141	21	3.7	20	69	19	57	43	1	21	34	1.61
1331213--1331239	13	2.1	13	100	0	54	40	14	14	29	1.86
1332542--1332598	20	2.8	20	81	0	60	38	12	15	33	1.85
1332584--1332612	13	2.2	13	100	0	58	31	17	13	37	1.89
1336066--1336091	13	2.0	13	100	0	52	30	15	15	38	1.88
1336790--1336833	21	2.1	21	83	8	54	25	31	4	38	1.76
1338641--1338679	13	3.0	13	96	0	69	38	15	17	28	1.91
1344850--1344875	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1348370--1348395	13	2.0	13	100	0	52	30	15	15	38	1.88
1348350--1348413	33	2.0	33	90	3	103	26	14	17	42	1.87
1350192--1350232	22	2.0	20	86	13	57	31	21	4	41	1.74
1352463--1352528	20	3.3	20	77	8	62	37	18	13	30	1.89
1352603--1352628	13	2.0	13	100	0	52	30	15	15	38	1.88
1352583--1352650	33	2.1	32	88	2	100	35	16	14	33	1.89
1357351--1357417	33	2.0	33	88	0	98	34	11	13	40	1.81
1357371--1357395	13	1.9	13	100	0	50	36	16	16	32	1.90
1357460--1357484	13	1.9	13	100	0	50	32	16	16	36	1.90
1357493--1357620	52	2.5	52	94	3	224	33	17	17	30	1.94
1362123--1362150	13	2.2	13	100	0	56	42	14	14	28	1.84
1362234--1362286	20	2.7	20	96	0	97	24	15	24	35	1.94
1362901--1362971	20	3.5	20	74	12	65	28	16	14	40	1.87
1363576--1363606	15	2.1	15	93	0	53	48	16	9	25	1.76
1365389--1365424	15	2.4	15	95	0	63	41	11	8	38	1.71
1369491--1369530	21	1.9	21	89	0	62	47	12	10	30	1.74
1369556--1369601	23	2.0	23	95	0	83	32	23	26	17	1.97
1369873--1369899	3	9.0	3	100	0	54	33	33	0	33	1.58
1371576--1371647	20	3.5	20	83	9	83	33	13	13	38	1.85
1374265--1374467	20	9.7	20	71	9	154	33	17	13	35	1.89
1374325--1374448	23	5.7	23	76	11	143	31	20	12	34	1.91
1374258--1374467	43	5.0	43	86	5	293	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1380660--1380850	79	2.4	78	82	3	229	38	12	19	29	1.88
1380708--1381030	129	2.5	126	82	6	362	37	11	20	30	1.88
1380916--1381084	50	3.4	51	80	6	200	32	11	23	33	1.90
1380790--1381144	179	2.0	179	84	7	470	35	11	21	31	1.89
1383878--1383902	13	1.9	13	100	0	50	32	16	16	36	1.90
1383981--1384018	17	2.2	17	95	0	67	23	23	10	42	1.85
1385599--1385928	40	8.6	38	69	18	184	40	14	23	21	1.89
1385408--1385815	152	2.7	151	88	1	593	40	15	23	19	1.90
1385671--1385961	116	2.5	116	85	0	402	40	15	21	22	1.90
1385943--1386639	122	5.7	121	81	5	674	31	18	25	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23