genome.fa.s51.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  3  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305424--305449	13	2.0	13	100	0	52	38	15	15	30	1.88
306382--306407	13	2.0	13	100	0	52	30	15	15	38	1.88
306362--306425	32	2.0	33	90	3	103	28	14	15	42	1.86
306800--306996	73	2.7	73	80	6	197	53	11	1	34	1.44
308263--308297	11	3.0	12	83	8	54	65	8	14	11	1.46
309731--309762	16	1.9	17	93	6	57	65	0	3	31	1.08
312287--312353	33	2.0	33	85	0	89	49	11	11	26	1.74
312317--312372	20	2.8	20	94	0	94	48	14	14	23	1.80
314549--314615	33	2.0	33	88	0	98	34	11	13	40	1.81
314569--314593	13	1.9	13	100	0	50	36	16	16	32	1.90
314656--314680	13	1.9	13	100	0	50	32	16	16	36	1.90
314689--314816	52	2.5	52	94	3	224	33	17	17	30	1.94
320476--320532	21	2.7	21	97	0	105	33	10	19	36	1.86
320588--320655	19	3.9	19	74	21	76	36	11	13	38	1.81
320592--320652	32	1.9	32	96	0	113	37	13	13	36	1.83
320695--320721	13	2.1	13	100	0	54	29	14	14	40	1.86
323232--323402	51	3.3	51	78	7	191	29	26	11	32	1.91
323385--323466	28	2.9	28	80	7	87	24	29	17	29	1.97
327831--328083	70	3.6	69	89	3	380	30	18	10	40	1.84
328009--328363	91	4.0	91	84	7	431	36	16	6	40	1.76
328016--328361	177	2.0	177	86	2	489	36	17	6	39	1.76
328307--328420	57	2.0	57	89	0	174	34	14	8	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328361--328533	94	1.8	94	91	0	283	32	13	6	46	1.70
330245--330275	16	2.0	15	93	6	53	19	22	12	45	1.84
331559--331584	13	2.0	13	100	0	52	38	15	15	30	1.88
335585--335611	13	2.1	13	100	0	54	29	14	14	40	1.86
335676--335705	13	2.3	13	94	0	51	36	13	13	36	1.84
335660--335726	33	2.0	33	85	5	91	34	10	19	35	1.86
337259--337305	3	15.7	3	86	0	67	40	0	31	27	1.57
337259--337305	15	3.1	15	93	6	78	40	0	31	27	1.57
339209--339437	79	2.9	78	83	5	271	30	15	27	26	1.96
339369--339488	51	2.4	51	86	0	159	29	15	27	27	1.96
339341--339674	158	2.1	157	82	7	399	30	15	26	27	1.96
339473--339547	28	2.6	30	91	8	122	25	20	32	22	1.98
339531--339627	51	1.9	51	84	0	131	34	10	23	31	1.89
339582--339801	79	2.8	78	80	4	246	34	13	23	28	1.93
342700--342934	45	5.3	44	78	11	214	41	12	26	19	1.87
342739--342909	89	1.9	89	85	5	238	41	11	28	18	1.85
342910--343420	62	8.5	60	85	6	669	26	19	28	25	1.99
343333--343515	100	1.8	101	91	1	305	28	18	27	26	1.98
343434--343860	61	7.0	60	91	1	611	27	19	28	24	1.99
343434--343860	121	3.5	122	91	1	660	27	19	28	24	1.99
350134--350205	28	2.6	28	82	14	87	27	19	30	22	1.98
350194--350307	51	2.2	51	87	0	156	29	9	27	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350245--350466	79	2.8	78	79	6	250	29	13	27	29	1.95
352555--352609	20	2.8	20	88	5	76	45	14	12	27	1.81
353223--353323	41	2.5	41	80	7	116	42	10	28	17	1.83
353330--353464	42	3.1	43	85	11	170	45	14	21	18	1.85
359364--359451	20	4.5	19	78	8	72	31	18	13	36	1.90
359402--359447	19	2.3	20	88	3	67	30	19	10	39	1.86
359500--359529	13	2.3	13	94	0	51	33	13	13	40	1.83
359484--359550	33	2.0	33	91	5	109	34	10	17	37	1.85
360439--360482	23	1.9	23	86	9	63	13	2	56	27	1.49
364311--364363	20	2.7	20	87	0	79	41	9	20	28	1.83
368268--368347	21	3.9	20	81	3	88	38	10	17	33	1.83
368880--368905	13	2.0	13	100	0	52	38	15	15	30	1.88
368862--368925	32	2.0	33	90	3	103	39	18	14	28	1.90
372993--373232	96	2.5	96	87	4	322	27	22	12	37	1.90
372998--373232	97	2.4	96	84	6	305	26	23	12	37	1.90
377594--377971	79	4.8	78	79	4	357	35	10	24	29	1.89
377600--377971	158	2.4	158	80	5	403	35	11	24	29	1.90
377907--378021	51	2.3	50	89	1	167	35	9	23	31	1.87
377907--378042	51	2.7	50	83	4	166	35	8	23	33	1.84
380484--380537	20	2.7	20	91	0	81	50	7	12	29	1.68
387680--387742	20	3.3	20	64	28	55	34	15	17	31	1.92
387670--387744	37	2.0	37	97	0	141	36	13	18	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389027--389182	46	3.4	45	75	5	143	40	16	10	32	1.83
392296--392353	13	4.0	13	76	23	62	34	15	15	34	1.89
392309--392372	19	3.7	19	76	23	86	31	15	15	37	1.89
392274--392373	32	3.1	32	95	4	175	32	16	16	36	1.90
392442--392466	13	1.9	13	100	0	50	36	16	16	32	1.90
392425--392487	33	1.9	32	87	3	90	30	15	20	33	1.94
398848--398927	39	2.1	38	83	4	99	47	13	18	20	1.82
398921--399007	45	2.0	44	84	6	113	40	8	28	22	1.83
399099--399629	122	4.3	127	84	7	645	32	18	24	24	1.97
399137--399629	249	2.0	245	85	6	665	31	19	24	24	1.98
399137--399626	61	8.0	62	82	9	558	31	19	24	25	1.98
400975--401032	29	2.0	29	83	6	73	12	25	24	37	1.90
402691--402768	37	2.1	37	81	13	90	46	6	3	43	1.47
405952--406101	52	2.9	52	86	2	212	32	14	19	33	1.92
406090--406114	13	1.9	13	100	0	50	36	16	16	32	1.90
406178--406202	13	1.9	13	100	0	50	32	16	16	36	1.90
406992--407276	43	5.7	52	79	10	242	33	16	24	25	1.96
406816--407143	173	1.9	167	83	7	419	38	14	23	23	1.91
407098--407287	43	4.1	44	81	12	247	32	17	25	25	1.97
407045--407284	95	2.5	95	87	6	333	32	17	24	25	1.96
407304--407427	28	4.3	28	83	7	135	16	15	30	37	1.90
407330--407645	30	10.6	30	74	14	163	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407471--407641	29	5.9	29	79	8	161	25	17	29	28	1.97
407468--407636	57	2.9	59	77	7	166	26	17	30	26	1.97
410943--411067	52	2.4	52	95	0	223	28	17	18	36	1.94
410943--411087	52	2.8	51	89	4	211	29	17	18	34	1.94
411076--411100	13	1.9	13	100	0	50	36	16	16	32	1.90
411165--411189	13	1.9	13	100	0	50	32	16	16	36	1.90
411143--411209	33	2.0	33	88	0	98	40	13	11	34	1.81
412620--412718	1	99.0	1	75	0	90	0	0	12	87	0.53
412616--412720	10	10.5	10	81	14	101	0	0	13	86	0.57
412611--412720	36	3.2	34	83	11	152	0	0	13	86	0.57
412611--412720	32	3.5	31	83	12	127	0	0	13	86	0.57
412611--412720	46	2.4	46	86	10	156	0	0	13	86	0.57
426489--426637	52	2.9	51	89	4	235	32	17	17	32	1.93
426626--426650	13	1.9	13	100	0	50	36	16	16	32	1.90
426712--426736	13	1.9	13	100	0	50	32	16	16	36	1.90
428681--428727	24	1.9	25	91	4	78	10	21	14	53	1.71
432635--432685	20	2.5	21	83	6	68	41	15	15	27	1.88
432633--432706	21	3.6	20	81	3	76	37	13	17	31	1.89
434706--434758	22	2.4	21	77	22	56	32	13	1	52	1.51
435122--435303	97	1.9	97	80	6	217	28	23	9	39	1.85
437818--437879	18	3.4	18	80	8	72	58	0	0	41	0.98
437867--437927	16	4.0	16	69	25	51	42	1	0	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437869--437941	29	2.6	28	91	6	112	43	1	0	54	1.08
437883--437973	39	2.3	39	81	11	96	45	2	0	52	1.13
437864--437941	28	2.8	29	86	9	117	46	1	0	52	1.08
437922--437977	28	2.0	29	86	10	80	44	1	0	53	1.11
437883--438149	12	21.8	12	65	26	68	44	1	1	53	1.17
437904--438032	39	3.2	40	79	15	115	45	1	0	52	1.10
437925--438099	33	5.4	32	73	16	123	43	1	0	54	1.14
437957--438099	67	2.1	65	81	7	146	44	2	0	53	1.17
438083--438145	18	3.6	18	72	16	60	42	0	3	53	1.16
437920--438132	97	2.2	98	78	10	215	44	1	1	52	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23