genome.fa.s51.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  5  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607320--607344	13	1.9	13	100	0	50	32	16	16	36	1.90
610040--610066	12	2.2	12	100	0	54	44	14	0	40	1.46
610992--611034	14	3.2	13	83	12	52	0	2	11	86	0.67
610990--611034	16	2.8	16	83	12	65	0	2	11	86	0.65
610990--611030	18	2.2	19	91	4	66	0	2	9	87	0.62
611000--611036	14	2.8	13	92	8	58	0	2	13	83	0.74
610991--611042	15	3.2	17	82	15	65	0	1	15	82	0.75
615559--615625	37	1.9	35	88	11	102	29	25	11	32	1.92
616094--616120	13	2.1	13	100	0	54	33	14	22	29	1.94
620185--620309	52	2.4	52	98	0	241	28	17	19	35	1.94
620185--620329	52	2.8	51	92	4	211	28	17	19	34	1.94
620318--620342	13	1.9	13	100	0	50	36	16	16	32	1.90
620384--620453	33	2.1	33	89	0	104	40	14	11	34	1.82
620409--620433	13	1.9	13	100	0	50	32	16	16	36	1.90
622120--622165	23	2.0	24	83	12	60	60	19	4	15	1.51
623582--623623	21	2.0	21	85	0	57	23	28	4	42	1.74
624716--624782	37	1.9	35	88	11	102	29	25	11	32	1.92
625251--625290	13	3.1	13	96	0	71	35	15	20	30	1.93
628151--628199	19	2.6	19	93	0	80	38	20	12	28	1.89
631728--631800	27	2.6	28	79	12	78	49	1	2	46	1.24
638861--639000	63	2.2	64	81	6	160	22	18	14	44	1.86
643198--643259	33	1.9	32	87	9	90	29	11	16	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650854--650893	21	1.9	21	89	0	62	35	10	20	35	1.86
651793--651846	20	2.7	20	88	11	76	35	18	14	31	1.91
651876--651929	19	2.8	20	91	2	83	37	18	14	29	1.91
651916--651970	21	2.6	21	97	0	101	45	12	14	27	1.81
652524--652568	21	2.0	23	91	8	76	42	17	4	35	1.70
654234--654283	21	2.4	21	83	9	59	48	0	20	32	1.50
654241--654283	21	2.0	22	86	4	61	51	0	20	27	1.48
654392--654417	13	2.0	13	100	0	52	38	15	15	30	1.88
659169--659297	52	2.5	52	96	0	231	27	18	17	35	1.94
659339--659431	19	5.5	18	70	29	80	34	17	12	35	1.88
659358--659414	13	3.9	13	76	24	60	33	17	14	35	1.90
659337--659431	32	2.9	32	96	1	172	34	16	12	35	1.87
664197--664250	20	2.7	20	88	11	76	35	18	14	31	1.91
664276--664313	20	1.9	20	100	0	76	31	10	10	47	1.72
664319--664345	13	2.1	13	100	0	54	40	14	14	29	1.86
665678--665738	32	1.9	32	93	0	104	24	13	21	40	1.88
666393--666418	13	2.0	13	100	0	52	38	15	15	30	1.88
668638--668682	21	2.1	21	84	8	56	53	4	20	22	1.63
670500--670555	20	2.8	19	83	5	67	37	16	16	30	1.90
670614--670639	13	2.0	13	100	0	52	38	15	15	30	1.88
672867--672911	21	2.1	21	84	8	56	53	4	20	22	1.63
674714--674744	15	2.1	15	93	0	53	48	16	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676828--676866	13	3.0	13	100	0	78	30	15	15	38	1.88
676987--677033	21	2.3	22	79	20	57	34	17	4	44	1.68
679299--679354	20	2.8	19	83	5	67	37	16	16	30	1.90
680459--680489	15	2.1	15	93	0	53	48	16	22	12	1.80
682561--682586	13	2.0	13	100	0	52	30	15	15	38	1.88
685141--685166	13	2.0	13	100	0	52	38	15	15	30	1.88
687327--687467	33	4.2	32	81	10	124	24	7	4	63	1.40
687401--687447	24	1.9	25	86	4	69	25	6	4	63	1.36
687401--687457	24	2.4	25	82	11	66	24	7	3	64	1.34
687512--687559	15	3.1	15	80	14	53	27	8	4	60	1.44
688367--688392	13	2.0	13	100	0	52	30	23	15	30	1.95
688489--688529	21	2.0	21	100	0	82	34	9	26	29	1.88
688525--688555	10	3.1	10	90	0	53	41	6	29	22	1.78
688579--688715	53	2.6	53	95	1	247	27	17	18	37	1.93
688685--688754	20	3.5	20	75	12	65	30	11	17	41	1.84
688794--688834	21	2.0	21	85	9	57	39	9	12	39	1.76
689951--689980	15	2.0	15	100	0	60	73	0	0	26	0.84
691414--691475	29	2.1	29	93	0	106	32	41	9	16	1.80
693554--693614	22	2.8	22	78	9	63	49	3	9	37	1.52
693732--693756	13	1.9	13	100	0	50	32	16	16	36	1.90
693711--693774	33	2.0	33	90	3	103	31	15	15	37	1.89
697208--697328	52	2.3	52	95	0	215	28	19	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697208--697348	52	2.7	51	84	6	185	30	18	18	32	1.95
697427--697451	13	1.9	13	100	0	50	32	16	16	36	1.90
697405--697471	33	2.0	33	88	0	98	40	13	11	34	1.81
698611--698635	13	1.9	13	100	0	50	32	16	16	36	1.90
698724--698749	13	2.0	13	100	0	52	38	15	15	30	1.88
703972--704017	8	5.8	8	92	7	76	13	0	26	60	1.32
704196--704232	13	2.8	13	100	0	74	32	16	21	29	1.95
704674--704718	20	2.1	22	84	8	58	17	46	28	6	1.73
706108--706152	22	2.0	22	83	8	56	35	2	26	35	1.69
708539--708591	19	2.7	20	91	2	90	35	16	18	28	1.93
708580--708604	13	1.9	13	100	0	50	32	16	16	36	1.90
714379--714420	6	7.0	6	88	0	57	0	21	35	42	1.53
719731--719764	2	17.0	2	87	0	50	44	0	55	0	0.99
720153--720211	22	2.6	22	79	12	75	22	0	5	72	1.03
720135--720219	11	7.5	12	70	13	56	24	0	4	70	1.06
721209--721276	20	3.4	20	72	0	73	35	13	10	41	1.78
734693--734779	29	3.0	28	86	8	120	83	11	2	2	0.82
734692--734756	1	65.0	1	79	0	58	87	10	0	1	0.61
734692--734782	12	7.8	12	75	21	54	83	10	2	3	0.85
734797--734900	43	2.4	43	85	7	147	32	25	23	19	1.97
736042--736368	28	11.5	28	84	6	392	29	29	17	24	1.97
736041--736368	113	2.9	111	85	5	435	29	29	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736043--736411	28	12.8	32	79	11	136	30	27	17	24	1.97
736307--736411	32	3.4	32	82	3	99	31	24	18	25	1.97
736483--736602	49	2.6	46	84	7	152	23	28	18	30	1.98
737309--737365	20	2.8	20	91	0	96	29	10	14	45	1.78
738459--738664	79	2.6	77	82	6	227	28	17	30	23	1.97
738675--738888	104	2.1	104	89	3	324	32	8	26	33	1.86
738676--738888	52	4.1	52	77	7	218	32	8	25	33	1.86
741257--741282	13	2.0	13	100	0	52	38	15	15	30	1.88
741236--741302	33	2.0	33	88	0	98	43	14	14	26	1.85
741325--741349	13	1.9	13	100	0	50	32	16	16	36	1.90
741935--742150	118	1.8	117	81	10	271	41	13	24	20	1.88
742129--742823	55	12.4	53	82	10	652	23	20	29	26	1.99
742364--742824	60	8.0	60	83	10	524	24	20	29	25	1.99
742129--742824	110	6.2	109	82	10	766	23	20	29	26	1.99
742364--742823	176	2.7	176	91	2	745	23	20	29	25	1.99
743803--743870	1	68.0	1	74	0	55	1	2	8	86	0.73
743813--743870	18	3.2	17	87	7	71	1	1	8	87	0.67
756324--756475	79	1.9	78	82	5	189	31	15	28	23	1.96
756431--756508	28	2.8	28	86	0	93	21	19	35	23	1.96
756622--756744	51	2.4	51	79	9	124	33	11	21	33	1.89
756461--756731	132	2.1	132	90	2	429	32	10	26	30	1.90
759113--759138	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759092--759158	33	2.0	33	88	0	98	43	16	14	25	1.86
759178--759245	19	3.9	18	76	23	83	36	17	11	33	1.86
759200--759224	13	1.9	13	100	0	50	32	20	16	32	1.94
759181--759243	32	2.0	32	96	0	117	34	19	12	33	1.89
762282--762307	13	2.0	13	100	0	52	30	15	15	38	1.88
762262--762325	32	2.0	33	90	3	103	28	14	18	39	1.90
762262--762332	19	4.0	18	72	25	62	26	12	21	39	1.89
763389--763414	13	2.0	13	100	0	52	30	15	15	38	1.88
764112--764155	21	2.1	21	83	8	54	25	31	4	38	1.76
765950--765976	13	2.1	13	100	0	54	40	14	14	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23