genome.fa.s51.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  8  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052560--1053503	84	11.3	84	80	5	839	49	13	18	17	1.80
1052560--1053495	41	22.4	41	66	13	229	49	13	19	17	1.79
1053546--1053642	42	2.3	42	81	8	101	54	12	14	18	1.70
1053656--1053744	43	2.1	43	82	0	106	51	15	15	16	1.76
1053701--1054435	84	8.8	83	79	7	628	47	13	19	18	1.82
1053579--1054068	127	3.9	126	70	10	295	49	14	17	18	1.80
1053667--1054060	43	9.4	41	70	10	165	48	14	19	17	1.81
1053706--1054435	168	4.4	167	80	7	747	47	13	20	18	1.82
1053756--1054061	43	7.4	39	71	13	184	49	14	19	17	1.80
1054093--1054223	43	3.1	41	72	12	122	49	12	19	18	1.78
1054473--1054584	44	2.6	43	83	7	136	41	21	21	16	1.90
1054827--1054881	18	3.0	18	79	15	51	18	18	5	58	1.58
1055121--1055413	92	3.2	91	80	5	337	30	13	26	29	1.94
1056800--1057209	203	2.0	203	95	0	732	29	9	15	46	1.76
1057384--1057416	15	2.1	16	88	5	50	24	3	15	57	1.52
1070131--1070181	20	2.5	20	90	0	75	37	11	19	31	1.88
1078923--1078947	13	1.9	13	100	0	50	40	8	16	36	1.77
1078934--1078971	20	1.9	20	100	0	76	39	10	13	36	1.79
1079221--1079288	19	3.9	19	78	21	85	35	11	14	38	1.83
1079242--1079266	13	1.9	13	100	0	50	36	16	16	32	1.90
1079223--1079285	32	2.0	32	96	0	117	34	12	15	36	1.86
1079308--1079361	20	2.7	20	100	0	108	22	14	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079348--1079373	13	2.0	13	100	0	52	30	15	15	38	1.88
1079328--1079394	33	2.0	33	88	0	98	25	14	16	43	1.86
1081728--1082095	52	6.9	51	67	15	158	30	26	11	31	1.92
1081848--1081923	27	2.8	28	89	2	109	23	34	21	21	1.97
1081944--1082130	52	3.6	51	80	7	171	32	23	10	34	1.88
1081953--1082129	53	3.4	53	78	9	150	32	23	10	32	1.89
1081734--1082235	266	1.9	265	85	4	706	30	25	12	31	1.93
1087489--1087515	13	2.1	13	100	0	54	29	14	14	40	1.86
1094299--1094342	13	3.1	14	83	9	63	45	0	0	54	0.99
1097183--1097221	18	2.1	19	85	4	53	71	7	7	12	1.29
1100358--1100412	20	2.8	20	80	0	65	43	14	9	32	1.77
1101381--1101409	15	1.9	15	100	0	58	13	27	13	44	1.82
1108237--1108286	19	2.6	19	93	0	91	38	20	10	32	1.85
1108275--1108299	13	1.9	13	100	0	50	32	16	16	36	1.90
1108818--1108861	17	2.7	15	80	19	52	36	0	9	54	1.32
1112098--1112171	20	3.7	19	85	7	103	39	13	14	32	1.86
1114878--1115094	76	2.9	76	80	4	206	30	15	15	38	1.89
1115118--1115212	29	3.3	29	72	15	88	44	13	13	28	1.82
1116400--1116457	30	1.9	30	82	10	73	34	1	1	62	1.16
1116769--1116808	12	3.5	11	83	12	53	77	2	20	0	0.88
1119908--1119963	26	2.2	26	100	0	112	12	7	44	35	1.70
1120479--1120554	20	3.8	20	83	0	80	39	13	14	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120429--1120603	90	1.9	91	89	1	271	42	12	17	28	1.84
1123685--1123709	13	1.9	13	100	0	50	36	16	16	32	1.90
1124006--1124071	35	2.0	34	85	14	93	16	15	12	56	1.68
1127313--1127839	266	2.0	267	98	0	1020	40	11	15	31	1.84
1130172--1130238	33	2.0	33	88	0	98	31	16	14	37	1.89
1131709--1131739	13	2.4	13	94	0	53	38	9	16	35	1.81
1132350--1132459	20	5.3	20	78	6	112	30	16	13	39	1.87
1135398--1135454	21	2.7	21	100	0	114	31	10	21	36	1.87
1135510--1135577	19	3.9	19	78	21	85	35	11	14	38	1.83
1135531--1135555	13	1.9	13	100	0	50	36	16	16	32	1.90
1135512--1135574	32	2.0	32	96	0	117	34	12	15	36	1.86
1135617--1135642	13	2.0	13	100	0	52	30	15	15	38	1.88
1135597--1135663	33	2.0	33	88	0	98	25	14	16	43	1.86
1138109--1138181	27	2.7	27	82	6	85	24	34	20	20	1.97
1137999--1138334	51	6.4	51	70	13	198	30	26	11	31	1.92
1138317--1138398	28	2.9	28	82	7	96	24	31	17	26	1.97
1140190--1140243	20	2.8	20	88	2	74	31	12	16	38	1.87
1140300--1140339	20	2.0	20	95	0	71	32	12	20	35	1.90
1140273--1140341	33	2.1	33	84	10	88	30	14	20	34	1.92
1146304--1146344	20	2.2	18	86	8	55	26	2	21	48	1.63
1148372--1148447	39	1.9	39	100	0	152	32	2	32	31	1.72
1148369--1148439	22	3.5	22	74	18	89	33	2	36	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148445--1148493	22	2.3	22	85	3	64	40	4	28	26	1.74
1149050--1149100	20	2.6	20	90	3	77	31	15	17	35	1.92
1149045--1149100	19	2.9	19	86	2	76	32	17	16	33	1.92
1153295--1153366	22	3.4	20	79	9	72	73	8	9	8	1.25
1153318--1153388	21	3.4	20	75	12	63	73	5	11	9	1.25
1154656--1154712	30	1.9	30	85	7	80	24	24	15	35	1.95
1154683--1154753	34	2.1	35	86	2	99	25	28	9	36	1.88
1154724--1155552	28	29.8	28	84	3	946	25	31	14	28	1.95
1155455--1155891	28	15.6	28	79	4	400	28	28	17	25	1.98
1155509--1155909	113	3.5	112	83	3	410	28	29	17	25	1.97
1155598--1155891	141	2.1	141	82	2	358	27	29	18	24	1.98
1160856--1161056	79	2.5	78	80	4	197	35	12	23	28	1.91
1161013--1161129	51	2.3	51	82	2	137	29	11	29	28	1.92
1161114--1161213	28	3.6	28	82	5	130	27	17	31	25	1.97
1163571--1163636	20	3.3	20	82	0	87	43	15	16	24	1.86
1163652--1163681	13	2.3	13	94	0	51	43	13	13	30	1.82
1166584--1166622	20	1.9	21	89	5	62	33	15	10	41	1.81
1172688--1172739	19	2.7	20	81	3	70	34	15	19	30	1.93
1176990--1177066	20	3.8	20	86	6	111	40	11	16	31	1.85
1176943--1177116	90	1.9	91	89	1	269	41	11	17	29	1.84
1178240--1178264	13	1.9	13	100	0	50	36	16	16	32	1.90
1180674--1180967	150	2.0	149	84	3	385	28	13	9	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1182964--1183232	147	1.8	145	78	5	301	37	12	13	36	1.82
1188030--1188067	20	1.9	20	88	0	58	31	18	10	39	1.85
1190427--1190692	51	5.2	51	82	0	300	31	24	10	33	1.90
1190632--1190879	79	3.2	77	78	9	259	27	28	14	30	1.95
1190632--1190935	79	3.9	79	77	9	237	26	26	15	31	1.95
1203322--1203359	15	2.5	15	88	12	60	89	10	0	0	0.49
1203324--1203358	18	1.9	18	94	0	61	88	11	0	0	0.51
1204433--1204682	55	4.5	55	86	2	331	26	27	21	24	1.99
1204440--1204682	111	2.2	111	86	2	337	27	26	22	23	2.00
1204721--1204909	61	3.1	61	89	2	290	24	25	17	31	1.97
1204900--1205069	87	2.0	85	85	8	227	18	25	14	41	1.88
1204900--1205081	42	4.2	42	74	12	163	18	25	13	43	1.86
1205037--1205119	34	2.5	33	83	13	98	19	26	10	43	1.84
1205037--1205169	40	3.5	39	76	17	118	19	27	11	42	1.85
1205646--1205670	13	1.9	13	100	0	50	40	8	16	36	1.77
1205678--1205707	13	2.3	13	100	0	60	30	16	13	40	1.87
1205761--1205789	13	2.2	13	100	0	58	31	13	13	41	1.84
1205659--1205838	82	2.2	82	85	4	247	30	15	15	40	1.87
1213186--1213272	42	2.1	42	93	0	147	29	16	16	37	1.90
1213186--1213249	22	3.0	22	69	17	62	28	18	15	37	1.92
1213209--1213274	20	3.2	20	74	10	62	31	12	18	37	1.87
1213312--1213364	20	2.7	20	100	0	106	33	11	15	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217805--1217858	21	2.7	20	77	8	65	37	14	11	37	1.82
1218256--1219142	441	2.0	442	97	0	1659	33	20	14	31	1.93
1219694--1220625	30	31.0	29	65	12	170	22	23	13	40	1.89
1219694--1220592	60	14.9	61	74	8	546	22	23	13	40	1.89
1219683--1220625	121	7.8	121	81	4	949	22	23	13	40	1.89
1221682--1221723	21	2.0	21	100	0	84	42	14	4	38	1.66
1221720--1222359	166	3.8	166	81	5	695	28	10	8	52	1.65
1221720--1222358	170	3.8	169	81	6	685	28	10	8	52	1.65
1221720--1222358	336	1.9	336	82	5	808	28	10	8	52	1.65
1228030--1228083	20	2.7	19	83	11	65	33	16	18	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23