genome.fa.s51.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Length:  3712191

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  4  of  23  ( 2647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438190--438228	14	2.7	14	84	4	51	38	0	0	61	0.96
438607--438734	15	9.3	14	71	21	92	42	0	0	57	0.99
438672--438714	7	5.9	7	81	8	50	48	0	0	51	1.00
438672--438714	22	2.0	22	100	0	86	48	0	0	51	1.00
438190--439116	505	1.8	507	98	1	1799	27	15	12	44	1.83
441353--441379	13	2.1	13	100	0	54	33	0	0	66	0.92
445441--445474	3	11.3	3	100	0	68	67	0	0	32	0.91
450767--450822	19	2.8	20	75	2	60	37	16	12	33	1.86
461101--461154	20	2.7	20	85	0	72	33	14	14	37	1.88
461183--461238	19	2.9	19	89	2	76	37	17	16	28	1.91
461223--461249	13	2.1	13	100	0	54	40	14	14	29	1.86
465852--465880	11	2.5	12	94	5	51	48	6	13	31	1.69
467683--467819	52	2.6	52	85	4	179	40	13	16	29	1.87
467875--467928	20	2.7	20	85	8	65	29	16	12	40	1.86
475080--475394	158	2.0	158	90	1	497	33	17	11	37	1.85
490855--490903	14	3.4	15	86	5	57	85	14	0	0	0.59
490855--490900	20	2.2	20	88	3	65	84	15	0	0	0.62
490855--490923	32	2.1	33	83	2	86	79	13	4	2	0.99
492184--492774	30	19.0	30	79	7	558	24	29	15	31	1.95
492191--492774	61	9.4	61	82	6	654	24	29	15	30	1.95
492191--492767	125	4.6	125	82	5	695	24	29	15	31	1.95
492191--492933	372	2.0	370	79	7	815	23	29	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492813--493056	129	1.9	130	83	9	325	20	30	13	36	1.91
492971--493023	27	2.0	27	92	0	88	26	30	15	28	1.96
492776--493190	129	3.2	126	76	13	314	19	32	12	35	1.90
492755--493194	33	13.8	32	78	9	390	19	32	12	35	1.90
493191--494220	49	21.8	49	76	12	847	25	25	17	31	1.97
493194--494124	88	10.0	89	75	16	639	25	25	18	30	1.98
493287--493837	48	11.7	48	80	10	496	26	25	17	30	1.97
493717--493877	39	3.9	39	74	13	151	26	27	19	26	1.99
493679--493926	87	2.8	85	89	4	352	25	26	19	28	1.99
493839--494220	150	2.6	148	81	5	423	23	25	18	32	1.97
495061--495166	20	4.8	20	71	22	86	33	15	12	38	1.84
495342--495385	18	2.4	18	96	0	79	15	31	29	22	1.95
500286--500341	20	2.8	20	97	0	103	37	14	8	39	1.77
507835--507969	52	2.6	53	81	11	179	33	11	25	29	1.91
507991--508067	27	2.8	27	84	5	93	23	19	33	23	1.97
507975--508165	103	1.9	103	87	2	285	29	17	27	25	1.97
508118--508223	27	3.9	27	86	2	158	23	19	32	24	1.98
508101--508220	55	2.2	55	95	0	213	24	21	30	23	1.99
508207--508329	51	2.4	51	87	6	167	32	11	23	32	1.90
510682--510707	13	2.0	13	100	0	52	38	15	15	30	1.88
510661--510727	34	2.0	33	88	2	98	44	11	16	26	1.82
510871--510903	15	2.1	16	88	11	50	9	0	9	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511571--512072	55	9.0	54	84	8	612	24	20	27	27	1.99
513064--513150	1	87.0	1	72	0	57	1	4	9	85	0.79
513062--513138	12	6.7	11	78	14	66	1	6	7	84	0.83
513053--513146	25	3.8	25	80	10	79	1	7	8	82	0.87
513064--513151	10	8.0	11	74	12	74	1	4	10	84	0.82
513053--513121	23	2.9	23	84	4	75	1	8	5	84	0.84
513064--513150	40	2.2	39	84	6	113	1	4	9	85	0.79
513079--513138	16	3.6	17	84	6	79	1	3	10	85	0.79
513067--513148	25	3.3	25	80	8	80	1	4	9	84	0.83
513067--513147	16	4.9	16	77	15	69	1	4	9	83	0.83
518337--518362	13	2.0	13	100	0	52	38	15	15	30	1.88
518316--518382	34	2.0	33	88	2	98	44	11	16	26	1.82
518414--518486	19	3.7	19	83	5	92	38	16	12	32	1.86
527282--527548	28	9.4	28	81	10	267	31	30	17	20	1.96
527278--527548	113	2.4	111	83	7	307	30	30	17	20	1.96
527570--527706	43	3.0	43	78	12	166	25	24	17	32	1.97
527629--527850	49	4.5	49	78	6	232	26	26	17	30	1.97
527591--527866	149	1.9	143	83	7	358	26	25	17	31	1.97
528642--528707	33	2.0	33	85	5	89	31	13	13	40	1.84
533119--533261	50	2.8	51	87	5	218	43	11	18	25	1.85
534196--534779	29	20.3	30	80	7	134	24	17	29	27	1.97
534224--534836	28	21.4	29	81	5	622	24	17	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534224--534836	57	10.7	57	83	5	648	24	17	29	27	1.97
534858--534921	13	4.9	13	73	16	53	32	18	14	34	1.91
549278--549304	13	2.1	13	100	0	54	40	7	14	37	1.74
549259--549356	33	3.0	33	90	1	144	39	14	16	29	1.88
549311--549337	13	2.1	13	100	0	54	40	14	14	29	1.86
549291--549356	20	3.7	20	71	26	74	39	16	18	25	1.91
549889--549941	19	2.7	18	83	16	61	20	39	3	35	1.71
551755--551796	13	3.2	13	89	0	66	38	16	16	28	1.91
557960--558023	13	5.4	13	75	21	68	35	15	14	34	1.88
557940--558020	33	2.5	33	92	8	130	33	17	12	37	1.87
557968--558005	20	1.9	20	94	0	67	39	18	10	31	1.85
558616--558692	20	3.8	20	84	6	93	42	12	12	31	1.81
558568--558742	90	1.9	91	88	3	264	43	11	16	29	1.82
568543--568591	23	2.2	22	81	3	53	67	16	2	14	1.33
568814--569772	79	12.2	78	76	8	674	36	13	22	27	1.91
568814--569772	158	6.1	158	77	6	805	36	13	22	27	1.91
568837--569772	315	3.0	314	79	7	880	36	13	22	27	1.92
572240--572307	34	2.0	34	94	0	118	29	14	17	38	1.90
572671--573068	61	6.5	61	83	4	397	28	17	26	26	1.98
572671--573075	122	3.3	121	83	4	454	28	17	27	26	1.98
572671--573068	183	2.2	185	84	3	498	28	17	26	26	1.98
574085--574136	1	52.0	1	76	0	50	0	3	7	88	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574085--574135	9	5.4	9	84	9	57	0	3	7	88	0.63
574082--574136	14	3.9	13	82	15	56	0	5	7	87	0.68
583845--583892	4	11.8	4	93	2	78	75	0	2	22	0.91
585932--586253	79	4.1	80	84	4	397	34	14	24	26	1.94
585897--586218	157	2.0	159	85	3	436	36	13	22	26	1.92
585932--586253	157	2.0	158	84	5	420	34	14	24	26	1.94
586177--586305	51	2.6	51	79	10	151	34	12	26	27	1.92
586292--586360	28	2.5	28	100	0	138	28	14	27	28	1.95
586240--586439	107	1.9	107	83	4	260	32	13	26	28	1.93
586318--586504	79	2.4	79	82	4	216	31	13	27	27	1.94
585932--586552	158	3.9	157	71	12	432	34	13	24	26	1.93
586370--586552	79	2.3	79	83	3	217	36	12	25	26	1.91
588917--588957	20	2.0	20	90	0	64	31	17	7	43	1.76
595986--596011	13	2.0	13	100	0	52	30	15	15	38	1.88
596133--596184	19	2.7	18	75	24	52	40	23	0	36	1.55
598330--598354	13	1.9	13	100	0	50	36	16	16	32	1.90
598421--598450	13	2.3	13	94	0	51	36	16	10	36	1.82
598405--598471	33	2.0	33	85	5	91	32	13	17	35	1.89
600944--601017	38	1.9	38	97	0	139	28	18	9	43	1.81
603965--604037	27	2.6	28	79	12	78	49	1	2	46	1.24
604908--605485	49	11.5	49	80	6	584	32	17	25	23	1.97
604908--605591	101	6.9	101	85	6	782	32	18	25	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605412--605585	86	2.0	88	87	2	253	28	21	25	24	1.99
605608--605704	30	3.3	29	78	7	106	17	15	30	36	1.91
605718--605886	27	5.7	27	76	17	167	29	12	34	23	1.91
605745--605865	34	3.8	34	78	14	157	33	11	33	21	1.89
605655--605886	61	3.8	61	92	2	358	28	12	34	24	1.92
605867--606084	34	6.7	32	82	5	237	33	14	28	23	1.94
605867--606084	31	6.7	31	80	9	240	33	14	28	23	1.94
605867--606094	61	3.5	62	81	9	242	34	13	28	23	1.93
607231--607255	13	1.9	13	100	0	50	36	16	16	32	1.90
607211--607280	33	2.1	33	89	0	104	34	11	14	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23