genome.fa.s246.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  11  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436731--436792	32	2.0	31	87	9	90	51	1	0	46	1.10
436801--436882	17	4.5	17	77	20	62	43	1	3	51	1.27
436819--436899	28	2.9	28	78	12	87	46	0	3	49	1.19
436801--436889	37	2.5	35	77	18	85	46	1	3	49	1.26
436859--436902	15	2.7	16	83	13	54	47	0	6	45	1.29
436835--436909	11	6.8	11	72	22	50	49	0	4	46	1.20
436847--436928	39	2.0	42	81	15	100	50	0	4	45	1.23
437085--437137	27	2.0	27	85	3	72	45	0	3	50	1.19
437146--437210	27	2.4	26	82	7	67	49	0	4	46	1.22
438511--438554	20	2.3	19	80	7	52	45	9	4	40	1.56
438597--438643	16	3.1	17	82	17	59	48	4	0	46	1.21
438638--438735	25	3.8	26	71	11	76	50	1	0	48	1.07
438658--438713	19	3.0	20	82	7	64	50	0	0	50	1.00
438688--438723	18	2.0	18	88	0	54	55	0	0	44	0.99
438702--438740	7	5.6	7	81	0	51	51	0	0	48	1.00
438695--438740	14	3.3	14	82	11	58	52	0	0	47	1.00
439007--439108	12	7.4	14	66	21	56	49	0	0	50	1.07
439146--439196	21	2.5	20	77	6	57	45	1	3	49	1.32
440718--440795	30	2.5	32	78	17	85	46	2	0	51	1.14
440805--440857	17	3.1	17	79	12	56	54	1	0	43	1.11
440807--440862	22	2.6	23	86	8	73	55	1	0	42	1.10
440965--440989	13	1.9	13	100	0	50	40	8	0	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441015--441069	21	2.6	22	77	16	62	45	3	9	41	1.53
441006--441087	20	4.0	19	72	17	58	42	2	8	46	1.47
441459--441502	17	2.4	18	88	7	63	52	2	0	45	1.13
441416--441480	27	2.3	29	79	12	82	49	0	1	49	1.10
441546--441584	20	2.0	20	85	14	55	35	5	2	56	1.35
442477--442517	18	2.3	18	86	0	55	58	0	0	41	0.98
442488--442525	14	2.7	15	80	16	53	55	0	0	44	0.99
442572--442622	27	1.9	26	92	4	84	49	3	0	47	1.20
442925--443081	69	2.3	68	77	16	164	45	0	0	53	1.09
442937--443071	28	4.7	27	73	24	93	44	0	0	54	1.05
442948--443082	31	4.5	31	76	15	88	45	0	0	54	1.05
442919--443081	21	7.4	23	68	24	86	46	0	0	52	1.09
443087--443141	17	3.3	16	78	19	51	43	0	1	54	1.10
443562--443595	10	3.5	10	88	8	52	44	0	0	55	0.99
443943--443993	20	2.5	20	81	12	59	45	0	3	50	1.20
443951--443993	20	2.2	20	87	8	61	44	0	2	53	1.13
444318--444353	18	1.9	19	88	5	56	38	2	2	55	1.29
444389--444504	18	7.5	15	71	23	57	45	0	2	50	1.21
444444--444476	13	2.5	13	85	14	50	42	0	6	51	1.26
444444--444503	25	2.4	25	83	8	68	43	0	3	53	1.17
444559--444610	13	4.2	12	77	18	54	53	3	1	40	1.30
444656--444716	32	1.9	32	83	12	81	40	0	4	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444885--444932	13	3.5	13	80	5	51	52	0	0	47	1.00
445062--445108	25	1.9	24	86	4	67	46	0	2	51	1.13
445086--445184	17	6.0	16	72	17	78	54	1	2	42	1.18
445120--445185	32	2.2	32	86	13	95	53	0	3	43	1.16
445055--445182	38	3.4	38	74	10	120	51	0	2	45	1.19
445044--445201	53	2.9	54	72	14	139	50	0	3	46	1.22
445229--445271	20	2.2	18	84	12	50	46	2	0	51	1.13
445236--445271	20	1.9	20	88	11	58	47	2	0	50	1.15
445850--445907	31	1.9	30	89	3	89	50	3	0	46	1.18
445859--445912	19	2.9	19	78	13	60	53	3	0	42	1.18
445896--445962	19	3.7	19	77	18	63	44	1	1	52	1.19
445952--446011	22	2.9	22	66	16	56	45	0	3	51	1.17
446043--446084	4	10.5	4	80	10	50	50	2	0	47	1.14
446025--446084	28	2.0	31	84	12	81	48	3	0	48	1.18
446045--446095	24	2.1	24	85	0	66	45	3	1	49	1.32
446266--446297	15	2.0	17	88	11	50	53	0	6	40	1.26
446645--446720	21	3.5	22	75	20	70	57	3	0	38	1.17
446936--446976	11	3.6	11	86	3	55	56	0	0	43	0.99
447480--447536	13	4.2	13	73	22	55	54	1	0	43	1.10
447471--447555	15	5.4	16	75	22	65	51	3	1	43	1.26
447720--447774	20	2.8	20	80	5	58	52	1	1	43	1.22
447716--447760	12	3.3	14	79	17	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447770--447821	26	1.9	28	81	14	65	48	3	5	42	1.45
448298--448380	27	3.2	27	79	15	86	44	2	2	50	1.28
448454--448533	8	10.1	8	72	22	53	51	1	0	47	1.08
448459--448533	20	4.2	17	75	18	64	52	1	0	46	1.09
448840--448907	26	2.6	27	82	13	79	45	1	1	51	1.19
448884--448926	17	2.6	17	88	3	61	44	0	2	53	1.13
448919--449003	6	14.3	6	71	18	54	50	0	2	47	1.14
448906--448998	36	2.6	36	82	15	113	50	0	2	47	1.13
448905--449032	24	5.4	24	70	20	83	50	0	1	47	1.10
448890--449009	17	6.9	17	73	16	79	49	0	1	49	1.11
449313--449351	17	2.3	17	86	8	53	53	5	0	41	1.23
449311--449358	14	3.3	14	80	13	53	50	4	0	45	1.21
449330--449369	14	2.9	13	88	7	53	50	2	0	47	1.14
449311--449399	34	2.7	33	77	19	87	49	3	1	46	1.26
450205--450242	19	2.0	19	85	10	51	50	0	2	47	1.15
450421--450471	20	2.5	21	72	15	54	54	0	1	43	1.11
451614--451638	13	1.9	13	100	0	50	56	0	4	40	1.18
451807--452374	180	3.2	179	76	7	537	42	10	7	39	1.68
452505--452544	17	2.4	17	87	8	55	47	0	2	50	1.14
452599--452681	16	5.3	15	72	18	62	49	0	0	50	1.00
452568--452666	19	5.4	19	70	25	63	49	0	3	47	1.17
452610--452667	19	2.9	19	82	17	73	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454374--454415	22	2.0	22	85	4	59	47	0	0	52	1.00
454691--454841	18	8.1	18	66	20	62	46	3	2	47	1.33
454818--454926	47	2.3	46	77	16	116	45	0	3	49	1.25
454851--454921	22	3.3	22	70	18	60	42	1	4	52	1.29
454860--454895	17	2.1	17	94	0	63	44	0	0	55	0.99
454948--454999	13	4.2	12	77	18	54	53	3	1	40	1.30
455558--455596	13	2.9	13	84	3	51	53	0	2	43	1.14
456360--456392	18	1.9	17	88	11	50	48	6	6	39	1.53
456076--456744	357	1.9	353	78	5	738	42	7	10	40	1.67
456060--456759	180	3.9	174	77	7	541	41	7	10	40	1.67
457234--457293	30	2.0	31	83	9	79	46	3	1	48	1.28
457560--457610	22	2.4	21	84	12	61	49	1	1	47	1.24
457569--457610	22	1.9	22	90	0	66	50	0	2	47	1.14
457963--458004	18	2.6	16	79	17	50	40	4	0	54	1.21
458104--459179	181	6.0	181	79	6	1011	41	8	9	40	1.69
458233--459197	534	1.8	533	81	4	1201	41	8	9	39	1.70
458214--459234	182	5.7	175	77	9	646	41	8	9	40	1.69
459288--459339	27	1.9	27	84	7	70	38	0	7	53	1.30
459320--459376	21	2.7	22	76	10	57	38	1	3	56	1.27
459951--459992	15	2.7	15	82	14	50	42	0	0	57	0.99
460495--460553	22	2.6	22	80	17	68	50	0	1	47	1.11
460490--460550	18	3.4	18	79	4	61	52	0	1	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460642--460691	14	3.8	14	76	12	52	50	0	0	50	1.00
460649--460712	28	2.2	28	81	13	69	46	1	0	51	1.10
461075--461116	18	2.3	18	84	8	50	47	4	0	47	1.23
461155--461202	25	2.0	24	84	12	62	45	4	2	47	1.33
461660--461692	16	2.0	17	88	5	50	48	3	9	39	1.50
461852--462357	182	2.8	179	77	9	499	39	7	8	44	1.63
462363--462481	44	2.8	42	77	15	113	49	2	0	47	1.21
462456--462506	26	2.0	25	88	3	75	47	0	1	50	1.12
462522--462572	18	3.0	17	83	13	61	43	3	0	52	1.19
462614--462684	24	3.0	22	79	8	70	43	2	1	52	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17