genome.fa.s246.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  16  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606382--606438	27	2.1	27	83	3	69	47	1	0	50	1.11
606396--606462	33	2.0	35	82	11	86	47	0	2	49	1.16
606615--606669	28	2.0	27	82	10	67	49	3	3	43	1.37
606768--606818	17	2.9	18	72	18	54	56	0	3	39	1.18
606805--606858	24	2.3	22	82	17	65	50	0	1	48	1.11
606822--606913	39	2.3	39	78	12	107	45	0	1	53	1.07
606818--606901	23	3.7	21	76	10	69	46	0	1	52	1.08
606875--606913	16	2.4	17	91	4	62	43	0	0	56	0.99
606817--606908	21	4.4	21	68	28	63	45	0	1	53	1.07
607023--607459	182	2.4	178	79	5	479	42	8	7	42	1.61
607568--607626	25	2.3	27	82	14	79	45	1	0	52	1.10
608534--608601	34	2.0	34	88	11	104	44	0	4	51	1.21
609600--609645	14	2.9	16	81	18	53	47	0	2	50	1.13
609560--609691	12	11.0	12	69	21	57	50	0	3	46	1.16
609834--610322	174	2.7	178	78	8	530	40	8	8	42	1.66
610169--610454	153	1.9	151	83	5	371	40	6	9	44	1.61
610963--611009	18	2.7	18	80	12	62	40	10	4	44	1.59
610982--611437	162	2.8	162	77	4	393	37	9	8	44	1.68
611598--611963	179	2.0	181	84	2	468	41	11	7	38	1.70
612824--612881	16	3.5	17	72	11	57	51	1	1	44	1.21
613826--613855	12	2.4	13	94	5	53	50	0	0	50	1.00
613838--613909	25	2.8	24	82	14	65	47	1	0	51	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613933--613978	20	2.4	19	85	7	58	47	0	0	52	1.00
613925--614022	27	3.8	25	71	26	71	45	0	2	52	1.12
614431--614513	27	3.2	27	76	15	77	49	2	3	44	1.32
614774--614825	23	2.3	23	86	6	70	50	0	1	48	1.12
614906--614950	13	3.6	13	77	16	51	55	0	0	44	0.99
615033--615124	18	4.9	18	71	25	66	45	3	0	51	1.17
615061--615104	20	2.2	20	84	8	54	47	0	0	52	1.00
615060--615124	27	2.4	28	82	15	82	46	1	0	52	1.10
615060--615145	35	2.4	37	79	16	99	44	1	1	53	1.15
615062--615168	9	12.3	9	70	24	54	41	0	0	57	1.12
615127--615179	19	2.8	19	86	11	65	32	0	1	66	1.03
615121--615185	28	2.3	28	83	2	76	33	0	4	61	1.16
615409--615457	24	2.0	24	85	14	66	51	2	0	46	1.12
615852--615900	20	2.6	19	81	15	50	51	0	0	48	1.00
615957--616005	21	2.3	21	89	0	71	42	0	2	55	1.11
616394--616435	11	3.8	11	83	0	57	57	2	0	40	1.12
616629--616694	13	5.4	12	78	14	73	48	3	0	48	1.17
616640--616694	4	13.8	4	75	21	53	49	1	0	49	1.11
616627--616694	24	2.8	24	97	0	127	50	2	0	47	1.16
616627--616702	24	3.4	22	91	7	93	50	2	1	46	1.24
616731--616797	22	3.3	21	68	17	61	52	2	0	44	1.16
616731--616816	40	2.3	37	86	8	111	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616803--616866	16	4.1	16	72	8	51	43	6	1	48	1.37
617065--617092	14	2.0	14	100	0	56	42	0	0	57	0.99
617722--617800	24	3.2	24	75	22	76	46	2	1	49	1.23
618126--618160	18	1.9	18	94	0	61	54	0	0	45	0.99
618278--618313	18	1.9	19	88	5	56	55	2	2	38	1.29
619033--619075	22	2.0	21	86	4	59	55	2	2	39	1.25
619758--619817	29	2.1	27	87	9	84	43	5	3	48	1.41
620063--620125	13	4.9	14	74	21	50	46	0	1	52	1.10
620061--620124	16	3.9	16	79	10	58	46	0	1	51	1.10
620262--620304	17	2.5	18	81	7	54	41	0	0	58	0.98
621006--621054	19	2.7	20	78	18	61	48	0	2	48	1.12
621026--621104	18	4.4	18	72	15	56	49	1	0	49	1.09
621420--621474	20	2.6	22	75	16	62	43	9	3	43	1.53
621420--621477	21	2.8	21	73	21	59	44	8	3	43	1.51
621618--621656	13	2.8	14	88	11	62	48	0	0	51	1.00
622581--622630	23	2.1	25	85	7	68	46	2	0	52	1.12
623289--623623	167	2.0	167	82	3	406	40	8	10	40	1.70
623855--623900	24	2.0	24	87	12	69	63	0	0	36	0.95
623855--623913	24	2.5	23	83	8	66	61	1	0	37	1.07
623951--623993	19	2.3	19	84	15	54	60	4	0	34	1.17
623985--624052	26	2.6	27	75	25	67	51	1	0	47	1.09
624553--624655	27	3.9	26	68	20	63	44	0	1	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624598--624641	18	2.3	20	77	18	58	47	2	0	50	1.13
624839--624868	12	2.4	13	94	5	53	43	6	0	50	1.28
625321--625408	27	3.3	27	70	16	74	51	0	1	47	1.08
626230--626378	9	16.0	9	68	25	55	42	0	3	53	1.17
626229--626338	19	5.7	19	67	20	68	41	0	3	54	1.18
626236--626329	16	5.6	17	70	22	56	41	0	4	54	1.20
626232--626378	12	11.5	13	66	23	64	42	0	3	53	1.17
626235--626375	68	2.1	67	80	9	162	43	0	3	53	1.18
626341--626373	10	3.0	11	86	13	50	51	0	0	48	1.00
627030--627064	16	2.3	15	90	5	52	37	5	2	54	1.39
627202--627235	17	1.9	18	88	5	52	50	2	0	47	1.16
627654--627700	21	2.2	21	84	0	58	36	0	6	57	1.24
628024--628058	16	2.2	16	89	0	52	40	0	5	54	1.24
629381--629826	180	2.5	180	83	3	522	41	9	9	39	1.70
630174--630226	18	3.3	15	75	17	52	52	0	0	47	1.00
630181--630257	22	3.5	22	76	16	70	51	1	0	46	1.09
630213--630269	30	2.0	28	86	13	80	50	1	0	47	1.11
630202--630314	48	2.3	49	80	8	124	47	3	0	48	1.19
630526--630581	14	3.8	15	77	17	55	46	0	1	51	1.11
630542--630602	18	3.1	19	76	11	61	45	0	0	54	1.00
630589--630641	28	2.0	26	85	7	70	49	0	3	47	1.19
630638--630684	16	3.1	17	82	17	59	46	0	4	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630727--630770	20	2.2	20	84	4	54	40	2	9	47	1.48
631281--631319	19	2.1	19	85	9	53	38	0	0	61	0.96
631317--631389	17	4.4	17	69	20	55	52	1	2	43	1.24
632585--632616	15	2.1	15	94	0	55	43	6	0	50	1.27
633082--633162	22	3.7	22	79	9	76	50	1	0	48	1.08
633113--633181	37	1.9	36	83	13	90	46	0	0	53	1.00
634049--634105	12	4.7	11	75	16	51	49	0	1	49	1.11
634002--634105	40	2.7	37	82	11	113	45	0	2	51	1.16
634008--634095	18	5.1	17	70	22	60	44	0	3	52	1.18
633999--634112	41	3.0	39	80	12	121	46	0	2	50	1.21
634220--634285	25	3.0	22	76	23	59	56	1	1	40	1.18
634222--634270	25	2.0	25	92	8	82	57	0	2	40	1.10
634505--634581	39	2.0	39	85	10	104	44	2	3	49	1.34
635341--635482	31	4.5	32	73	15	109	48	1	0	49	1.15
635369--635415	16	2.8	16	87	9	58	48	0	0	51	1.00
635363--635479	12	9.2	13	68	23	72	49	0	0	49	1.06
635785--635835	9	5.6	9	73	13	50	47	0	1	50	1.12
635810--635901	25	3.5	25	72	24	66	48	1	0	50	1.08
637036--637082	17	2.7	17	80	9	51	42	6	2	48	1.40
636857--637334	182	2.7	176	79	6	462	41	9	7	41	1.64
637468--637533	26	2.5	27	74	16	66	57	4	1	36	1.28
637770--637808	6	6.7	6	82	5	53	48	2	2	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637770--637809	17	2.3	17	86	4	53	50	2	2	45	1.28
637914--637955	13	3.2	13	86	6	59	52	0	0	47	1.00
638442--638480	20	1.9	21	84	5	53	41	0	7	51	1.31
638614--638698	21	4.1	21	69	13	61	42	1	2	54	1.21
639517--639574	21	2.7	22	84	7	75	53	0	1	44	1.10
639920--640266	185	1.9	185	81	4	432	39	7	10	42	1.67
640584--641073	178	2.8	177	83	7	538	45	7	6	40	1.59
641487--643180	180	9.5	180	75	7	1192	40	8	8	42	1.67
641487--645533	181	22.8	178	70	12	1340	41	8	8	41	1.66
642397--642729	182	1.9	181	82	5	433	39	8	9	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17