genome.fa.s246.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104890--104945	9	6.0	9	87	6	76	55	0	0	44	0.99
104893--104974	14	5.7	14	73	17	71	54	0	0	45	0.99
104866--105017	51	3.0	50	74	19	136	51	0	0	47	1.10
104890--105016	9	12.1	11	73	20	71	53	0	0	45	1.05
105244--105292	24	2.0	24	85	14	66	46	0	2	51	1.12
105554--105652	7	14.9	7	68	24	63	49	1	4	45	1.27
105572--105646	20	3.8	20	70	21	59	50	0	2	46	1.15
105572--105652	27	3.1	26	84	8	87	50	0	3	45	1.19
105572--105636	13	5.0	12	82	17	69	50	0	3	46	1.17
106311--106363	18	3.0	18	75	10	56	49	1	0	49	1.12
106318--106371	17	3.1	17	77	15	56	50	1	1	46	1.23
106694--106753	27	2.2	26	81	18	70	51	1	1	45	1.21
106694--106772	28	2.9	27	75	24	76	53	1	1	44	1.16
106800--106840	18	2.4	18	88	8	59	51	0	2	46	1.14
106801--106851	27	1.9	27	88	11	79	50	0	1	47	1.12
106739--106854	47	2.5	46	76	13	114	50	1	0	47	1.17
106992--107074	25	3.2	25	83	13	89	49	0	0	50	1.00
107001--107077	32	2.4	32	81	14	88	49	0	0	50	1.00
107540--107655	15	7.7	15	70	20	55	49	0	0	50	1.06
107554--107628	26	3.0	26	67	21	61	49	0	0	50	1.00
107574--107639	30	2.2	30	81	10	73	50	0	0	50	1.00
107598--107661	15	4.4	14	82	9	67	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107572--107687	41	2.8	42	76	14	127	49	0	0	50	1.06
107598--107661	5	13.0	5	72	21	55	45	0	0	54	0.99
107591--107683	20	4.6	20	77	11	84	48	0	1	50	1.07
107587--107659	30	2.4	30	82	8	78	49	0	0	50	1.00
107563--107648	15	5.9	15	66	19	56	51	0	0	48	1.00
107551--107689	50	2.8	51	79	16	150	50	0	0	48	1.05
107939--107994	28	1.9	29	82	13	71	57	5	1	35	1.32
108187--108238	26	2.0	26	88	3	79	53	0	0	46	1.00
108245--108274	12	2.6	12	94	5	53	53	0	0	46	1.00
108789--108843	15	3.6	15	79	16	51	34	3	3	58	1.33
109134--109171	13	2.8	13	81	18	51	44	2	0	52	1.14
109471--109551	27	2.7	31	73	19	75	50	0	1	48	1.08
109518--109577	6	10.0	6	76	20	63	51	0	0	48	1.00
109471--109585	29	4.0	29	76	17	91	52	0	0	46	1.06
109517--109613	20	5.1	18	74	22	65	54	1	1	43	1.14
109512--109619	7	16.0	7	69	21	54	54	0	0	43	1.12
109480--109590	35	3.3	35	75	23	114	54	0	0	45	1.00
109478--109624	48	3.0	47	74	14	122	54	0	0	44	1.10
109553--109618	28	2.2	30	86	7	91	57	1	1	39	1.17
110722--110764	20	2.0	20	86	8	59	44	2	2	51	1.27
110803--110895	24	4.2	22	73	14	66	53	3	2	40	1.29
110987--111032	18	2.3	20	85	10	60	50	4	0	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111044--111098	6	9.3	6	74	18	53	50	0	3	45	1.19
110954--111098	16	10.8	13	67	25	54	50	2	2	44	1.28
111464--111505	10	4.0	10	82	17	50	59	0	0	40	0.97
113073--113111	20	2.0	20	85	10	53	43	0	5	51	1.24
113137--113187	20	2.5	20	75	12	52	43	1	0	54	1.11
113287--113347	27	2.4	25	77	20	63	50	0	0	49	1.00
113303--113346	16	2.8	16	83	16	65	54	0	0	45	0.99
113305--113340	9	4.3	9	83	16	51	55	0	0	44	0.99
114246--114339	36	2.7	34	78	18	88	46	1	2	50	1.20
114279--114308	13	2.3	13	94	0	51	50	0	0	50	1.00
114260--114337	18	4.3	18	74	19	56	42	1	2	53	1.22
115316--115362	17	2.7	17	75	15	51	57	2	0	40	1.11
115766--115847	44	1.9	42	85	9	112	47	1	2	48	1.22
116040--116072	17	2.0	16	94	5	57	39	6	0	54	1.25
116428--116540	15	7.3	15	72	17	56	55	0	1	41	1.16
116713--116798	10	9.0	10	71	14	58	51	2	0	46	1.13
116712--116799	14	6.6	14	75	15	69	51	2	0	46	1.13
117015--117093	34	2.4	34	85	12	110	46	0	3	49	1.19
117078--117143	23	3.0	23	75	16	68	56	4	0	39	1.20
117078--117170	10	8.8	10	69	19	55	52	3	0	44	1.17
117065--117145	22	3.7	21	73	11	65	54	3	1	40	1.26
117204--117243	19	2.0	21	90	9	66	45	2	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117141--117270	24	5.9	22	67	18	67	46	0	3	49	1.25
118155--118800	182	3.6	178	81	5	662	39	9	8	42	1.68
118884--119021	67	2.1	66	80	9	147	47	2	5	44	1.37
120064--120109	16	2.8	17	83	12	60	41	0	4	54	1.20
120179--120212	16	2.2	16	89	5	52	70	0	8	20	1.13
120234--120713	180	2.7	176	79	8	499	39	10	7	41	1.68
121332--121371	20	2.0	20	85	0	53	40	2	2	55	1.27
121403--121453	18	2.7	19	81	9	59	49	3	0	47	1.20
122104--122144	13	3.2	14	80	19	54	53	4	0	41	1.22
122235--122270	18	1.9	19	88	5	56	55	2	2	38	1.29
122980--123027	22	2.1	24	84	7	64	52	2	6	39	1.39
124425--124473	16	2.9	17	85	11	57	51	2	0	46	1.12
124439--124498	18	3.4	18	77	11	54	50	3	0	46	1.18
125841--125884	15	2.8	16	80	19	56	56	0	4	38	1.20
125839--125886	23	2.1	22	81	11	53	54	0	4	41	1.20
125978--126010	17	2.0	17	88	5	50	54	0	0	45	0.99
126678--126728	20	2.5	20	75	12	52	43	1	0	54	1.11
126796--126867	29	2.5	30	80	11	78	44	2	4	48	1.36
126828--126876	21	2.3	22	79	13	57	46	0	2	51	1.12
126849--126890	16	2.5	17	84	7	59	52	0	0	47	1.00
127039--127109	30	2.3	31	76	18	85	46	2	5	45	1.41
127249--127293	19	2.3	19	84	7	54	31	0	4	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127292--127326	10	3.7	10	85	14	56	45	0	0	54	0.99
131966--132294	174	1.9	171	83	6	421	39	9	9	41	1.70
130660--133172	180	13.9	181	72	11	1358	40	9	9	40	1.70
130660--134950	180	23.9	175	69	14	1064	41	9	8	40	1.69
132510--133106	179	3.3	174	76	8	382	43	9	8	39	1.67
133328--133367	21	1.9	21	89	0	62	45	0	5	50	1.23
133350--133384	13	2.6	13	90	4	52	48	0	2	48	1.16
133330--133392	21	3.1	20	81	4	56	50	0	3	46	1.17
133359--133402	19	2.3	20	80	11	56	50	2	0	47	1.13
133394--133435	14	3.5	12	82	17	52	35	0	4	59	1.19
133389--133432	22	2.0	22	82	8	54	36	2	4	56	1.32
133387--133435	25	2.0	25	84	8	64	38	2	4	55	1.31
133401--133428	14	2.0	14	100	0	56	35	0	7	57	1.26
133440--134949	180	8.4	180	76	7	1188	40	10	8	40	1.70
133491--134810	361	3.7	362	75	9	821	41	10	8	39	1.70
135161--135206	23	2.0	22	84	16	58	34	2	8	54	1.43
136152--136191	11	3.5	11	80	6	53	60	7	0	32	1.25
136149--136194	23	2.0	23	100	0	92	56	8	0	34	1.30
136432--136969	179	3.0	182	77	4	518	40	7	8	43	1.63
136858--137096	120	2.0	121	85	4	322	43	7	12	35	1.72
137949--138030	19	4.3	19	69	20	55	46	1	1	51	1.16
137979--138017	12	3.4	11	82	10	51	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138943--139053	13	9.1	13	66	19	51	54	0	1	44	1.10
138950--139026	25	3.1	24	75	5	73	50	0	2	46	1.15
138997--139061	34	2.0	33	87	6	96	60	0	0	40	0.97
139292--139326	17	2.1	17	88	0	52	48	2	2	45	1.32
140133--141348	179	6.8	179	75	8	908	41	10	8	40	1.69
141582--141629	22	2.2	22	92	0	78	43	2	0	54	1.12
141586--141669	10	7.9	10	70	19	55	44	3	0	52	1.18
141583--141650	25	2.6	26	81	13	77	44	2	0	52	1.16
141920--142321	182	2.2	181	81	6	467	40	6	8	44	1.62
141902--142325	183	2.4	178	80	7	473	39	7	8	44	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17