genome.fa.s246.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  13  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495968--496011	14	3.1	14	81	12	54	54	0	0	45	0.99
496234--496275	20	2.1	20	82	8	50	54	7	0	38	1.28
496286--496684	181	2.2	179	81	5	451	40	11	9	39	1.72
497279--497337	25	2.3	26	80	8	68	50	0	1	47	1.11
497440--497507	22	2.9	23	75	18	68	48	2	1	47	1.26
497773--497828	22	2.5	22	82	8	69	48	1	0	50	1.11
497783--497826	18	2.6	17	82	13	56	45	2	0	52	1.13
497933--497979	14	3.6	13	73	21	53	48	0	0	51	1.00
497922--497976	25	2.2	26	87	9	80	49	0	0	50	1.00
497916--498003	38	2.2	39	82	10	97	50	1	1	47	1.16
498113--498158	24	1.9	24	86	0	65	36	4	2	56	1.31
498250--499951	178	9.6	179	73	9	980	41	9	7	41	1.66
500075--500109	16	2.2	16	89	0	52	54	2	0	42	1.15
500365--500420	27	2.1	27	83	12	71	37	0	5	57	1.22
500448--500712	142	1.9	141	83	7	349	41	6	9	41	1.64
500555--501473	181	5.1	179	76	11	773	39	8	10	42	1.69
500915--501476	177	3.2	178	81	7	572	39	8	10	41	1.70
501524--501568	23	1.9	24	86	4	65	48	0	2	48	1.13
501538--501581	14	3.1	14	81	12	54	54	0	0	45	0.99
501804--501845	20	2.1	20	82	8	50	54	7	0	38	1.28
501856--502252	183	2.2	178	81	7	451	40	10	9	39	1.72
502847--502905	25	2.3	26	80	8	68	50	0	1	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503008--503075	22	2.9	23	75	18	68	48	2	1	47	1.26
503328--503383	22	2.5	22	82	8	69	48	1	0	50	1.11
503338--503381	18	2.6	17	82	13	56	45	2	0	52	1.13
503488--503534	14	3.6	13	73	21	53	48	0	0	51	1.00
503477--503531	25	2.2	26	87	9	80	49	0	0	50	1.00
503471--503558	38	2.2	39	82	10	97	50	1	1	47	1.16
503668--503713	24	1.9	24	86	0	65	36	4	2	56	1.31
504200--504473	146	1.9	144	82	7	349	43	9	6	39	1.64
504346--504788	181	2.4	179	81	7	482	37	10	10	41	1.73
504669--504971	162	1.8	163	79	6	342	37	9	7	44	1.66
505421--505763	179	1.9	180	86	4	487	37	10	9	41	1.73
506601--506625	8	3.1	8	100	0	50	36	0	0	64	0.94
506597--506658	16	3.6	17	83	14	74	32	0	3	64	1.09
506736--506794	25	2.4	25	77	8	68	49	1	0	49	1.11
507112--507149	19	2.1	17	90	9	58	44	0	0	55	0.99
507513--507549	14	2.7	14	84	15	51	54	0	0	45	1.00
508261--509689	181	7.9	180	77	7	1160	41	8	9	40	1.68
508593--509661	541	2.0	542	82	3	1314	41	8	9	40	1.67
511747--511785	5	8.4	5	97	2	57	56	0	0	43	0.99
511747--511813	10	7.3	9	80	11	66	53	1	0	44	1.09
511746--511813	15	4.6	14	76	18	59	52	1	0	45	1.09
511750--511840	37	2.4	39	82	12	102	52	1	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512048--512103	21	2.7	22	73	26	59	55	1	0	42	1.10
512575--512647	22	3.1	22	77	14	58	46	2	0	50	1.15
512680--512718	14	2.6	15	84	12	53	53	0	5	41	1.23
513060--513113	23	2.2	25	78	15	60	33	5	1	59	1.31
513174--513219	22	2.0	24	83	8	60	32	2	2	63	1.19
513374--513403	12	2.4	12	94	5	51	56	0	0	43	0.99
514374--514424	24	2.3	23	81	15	63	52	0	0	47	1.00
514640--514702	27	2.3	27	86	8	83	42	0	0	57	0.99
514573--514701	11	11.8	11	65	19	65	44	0	1	53	1.15
514902--514941	15	2.6	16	82	17	50	45	0	5	50	1.23
514964--515009	24	2.0	22	84	12	58	43	0	2	54	1.12
515076--515105	10	3.0	10	95	0	51	53	0	0	46	1.00
515553--515617	24	2.8	23	75	17	64	43	3	0	53	1.16
515558--515644	44	2.0	45	82	11	108	39	3	2	55	1.30
515672--515723	27	2.0	26	84	3	68	48	1	1	48	1.24
515798--515953	20	7.6	20	66	16	68	48	1	3	46	1.28
516317--516365	12	4.2	12	75	17	50	57	0	0	42	0.99
516318--516372	14	3.9	14	78	19	51	54	0	0	45	0.99
516490--516550	30	2.0	30	84	6	79	50	0	0	49	1.00
516712--516761	21	2.5	20	83	3	64	56	0	4	40	1.18
517101--517144	23	1.9	23	86	9	63	40	2	2	54	1.25
517155--517210	22	2.6	22	74	2	60	64	3	0	32	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517214--517255	21	2.0	20	86	13	57	42	0	0	57	0.99
519621--519650	15	2.0	15	93	0	51	43	0	0	56	0.99
519625--519677	15	3.7	15	76	20	51	49	0	0	50	1.00
519654--519688	18	1.9	18	88	11	54	51	0	0	48	1.00
519876--519963	13	6.8	13	72	13	65	51	1	3	44	1.25
520017--520057	21	1.9	22	85	14	59	39	2	2	56	1.26
520267--520316	19	2.6	19	81	12	57	50	0	2	48	1.12
520251--520338	6	14.7	6	70	21	60	51	0	1	47	1.08
520499--520542	21	2.1	21	83	8	54	52	2	0	45	1.13
520494--520546	27	2.0	27	88	7	81	50	1	0	47	1.12
520681--520760	22	3.7	21	78	18	83	53	1	0	45	1.08
520683--520746	12	5.2	13	71	16	55	57	0	0	42	0.98
520983--521039	15	3.7	15	73	19	55	49	1	0	49	1.11
522852--522888	19	1.9	19	88	0	56	35	10	13	40	1.80
523691--523741	25	2.0	26	85	11	70	47	0	0	52	1.00
523706--523795	18	5.1	17	77	9	74	40	0	1	58	1.05
524122--524152	16	1.9	16	93	0	53	48	3	0	48	1.17
524566--524626	26	2.3	26	81	16	72	49	1	0	49	1.10
524678--524721	23	1.9	23	85	0	61	45	0	4	50	1.22
524730--524761	16	2.1	15	94	5	55	53	0	0	46	1.00
524833--524950	15	8.3	15	67	16	72	50	0	0	49	1.06
524823--524915	6	17.2	6	72	19	55	49	0	1	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524823--524928	29	3.7	30	77	18	95	50	0	0	48	1.07
524860--524898	20	2.0	20	94	0	69	48	0	0	51	1.00
524854--524902	26	2.0	24	88	8	71	48	0	0	51	1.00
524838--524940	30	3.6	29	75	14	97	49	0	0	50	1.00
524838--524961	30	4.2	30	75	16	91	50	0	0	50	1.00
526305--526338	16	2.0	16	88	11	50	44	0	0	55	0.99
526311--526354	19	2.2	19	84	8	52	43	2	0	54	1.12
526423--526472	24	2.0	25	84	3	66	48	0	2	50	1.12
529421--529463	20	2.2	20	87	4	61	53	4	2	39	1.34
529522--529575	17	3.4	16	76	16	51	50	1	3	44	1.30
529566--529599	17	2.0	17	88	11	52	52	0	0	47	1.00
529591--529668	14	5.7	15	73	22	64	47	5	1	46	1.33
529605--529668	25	2.4	27	82	12	89	50	3	1	45	1.27
529643--529688	20	2.2	21	85	11	60	54	0	0	45	0.99
530083--530382	146	2.1	146	97	0	564	34	18	8	38	1.81
530446--530492	7	7.0	7	87	4	62	34	0	0	65	0.93
530735--530777	22	2.0	22	85	0	59	41	2	0	55	1.12
530925--530979	14	4.4	13	73	15	53	47	0	0	52	1.00
531549--531603	20	2.9	19	81	7	67	47	0	1	50	1.11
531571--531602	15	2.1	15	94	0	55	43	0	0	56	0.99
531940--532018	35	2.4	32	81	12	90	50	2	0	46	1.14
533062--533139	22	3.6	22	72	17	65	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533098--533172	21	3.5	22	80	7	82	49	1	1	48	1.18
533246--533565	175	1.8	175	80	9	393	42	10	8	38	1.69
534125--534539	177	2.3	175	80	3	454	41	7	8	41	1.64
535452--535545	40	2.5	37	78	13	102	47	1	2	48	1.20
535543--535630	16	5.7	15	71	20	56	46	6	2	44	1.42
535821--535861	17	2.3	18	76	19	50	43	2	0	53	1.13
536042--536090	13	3.7	13	80	2	53	44	0	2	53	1.12
536002--536087	33	2.6	34	75	12	81	47	1	2	48	1.22
536433--536467	15	2.2	17	90	10	56	40	0	0	60	0.97
536717--536751	16	2.1	17	89	5	54	57	2	0	40	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17